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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: EXOSC7 (NCBI Gene ID:23016)


Gene Summary

check button Gene Summary
Gene InformationGene Name: EXOSC7
Gene ID: 23016
Gene Symbol

EXOSC7

Gene ID

23016

Gene Nameexosome component 7
SynonymsEAP1|RRP42|Rrp42p|hRrp42p|p8
Cytomap

3p21.31

Type of Geneprotein-coding
Descriptionexosome complex component RRP42exosome complex exonuclease RRP42ribosomal RNA-processing protein 42
Modification date20200313
UniProtAcc

Q15024


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0017148Negative regulation of translation
GO:0006417Regulation of translation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25
EXOSC7>1119.25


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Translation Studies in PubMed

check button We searched PubMed using 'EXOSC7[title] AND translation [title] AND human.'
GeneTitlePMID
EXOSC7..


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF
ENST000002655644503063145030733In-frame

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)
ENST00000265564450306314503073310721062072911953

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.
Q1502419532291ChainID=PRO_0000139963;Note=Exosome complex component RRP42
Q150241953819HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2NN6
Q1502419532426Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2NN6
Q1502419533639Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2NN6
Q1502419534553Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2NN6


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
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check buttonExpression level of gene isoforms across TCGA pancancer
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check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
KICHEXOSC71.116260225506060.00963503122329712
UCECEXOSC71.371417092186260.015625


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue
ACCEXOSC7hsa-miR-155-5p910.3060856864654330.00626921067188704


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a
THYMEXOSC7210.04779731068138480.2874155072463770.166951515151515-0.378287831855174-0.795191072962618

check buttonTranslation factor expression regulation through copy number variation of Translation factor
all structure
Cancer typeGeneCoefficientPvalue
LUSCEXOSC7-0.1000701570.024434425

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with EXOSC7 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
all structure
Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
DLBCCell metabolism geneEXOSC7POLR2F0.8027719036.76E-12
DLBCCell metabolism geneEXOSC7LSM30.8038823066.01E-12
DLBCCell metabolism geneEXOSC7POLR2L0.8067741754.42E-12
DLBCCell metabolism geneEXOSC7PSMB30.8101489173.06E-12
DLBCCell metabolism geneEXOSC7POLR2I0.8136972452.07E-12
DLBCCell metabolism geneEXOSC7PPCDC0.8154922581.69E-12
DLBCCell metabolism geneEXOSC7PMPCA0.8232251636.89E-13
DLBCCell metabolism geneEXOSC7TIMM130.8303583212.90E-13
DLBCEpifactorEXOSC7SS18L20.8851691426.81E-17
DLBCIUPHAREXOSC7SLC25A260.8084699473.68E-12
DLBCTFEXOSC7THAP30.8003977648.65E-12
DLBCTSGEXOSC7TSSC40.8117361522.57E-12
DLBCTSGEXOSC7GADD45GIP10.8125153592.36E-12
PCPGIUPHAREXOSC7CAMK10.8307045356.15E-49
PCPGKinaseEXOSC7CAMK10.8307045356.15E-49
THYMCell metabolism geneEXOSC7ACOT80.8001058762.10E-28
THYMCell metabolism geneEXOSC7DPM20.8005043111.89E-28
THYMCell metabolism geneEXOSC7SEC130.8014642851.46E-28
THYMCell metabolism geneEXOSC7POLR2I0.8017072321.36E-28
THYMCell metabolism geneEXOSC7PSMD90.802738791.03E-28
THYMCell metabolism geneEXOSC7SNRPD20.8039445347.42E-29
THYMCell metabolism geneEXOSC7TIMM8B0.8056058724.70E-29
THYMCell metabolism geneEXOSC7PGLS0.8070244333.17E-29
THYMCell metabolism geneEXOSC7PSMB10.8166082562.02E-30
THYMCell metabolism geneEXOSC7POLR2F0.8219173894.11E-31
THYMCell metabolism geneEXOSC7PSMC30.8424538975.04E-34
THYMEpifactorEXOSC7PRPF310.8228292313.11E-31
THYMIUPHAREXOSC7PSMB10.8166082562.02E-30
THYMTFEXOSC7ZNF4280.8222146313.75E-31
THYMTSGEXOSC7TSSC40.81199947.75E-30
UCSCell metabolism geneEXOSC7ACOT80.8001058762.10E-28
UCSCell metabolism geneEXOSC7DPM20.8005043111.89E-28
UCSCell metabolism geneEXOSC7SEC130.8014642851.46E-28
UCSCell metabolism geneEXOSC7POLR2I0.8017072321.36E-28
UCSCell metabolism geneEXOSC7PSMD90.802738791.03E-28
UCSCell metabolism geneEXOSC7SNRPD20.8039445347.42E-29
UCSCell metabolism geneEXOSC7TIMM8B0.8056058724.70E-29
UCSCell metabolism geneEXOSC7PGLS0.8070244333.17E-29
UCSCell metabolism geneEXOSC7PSMB10.8166082562.02E-30
UCSCell metabolism geneEXOSC7POLR2F0.8219173894.11E-31
UCSCell metabolism geneEXOSC7PSMC30.8424538975.04E-34
UCSEpifactorEXOSC7PRPF310.8228292313.11E-31
UCSIUPHAREXOSC7PSMB10.8166082562.02E-30
UCSTFEXOSC7ZNF4280.8222146313.75E-31
UCSTSGEXOSC7TSSC40.81199947.75E-30
UVMCell metabolism geneEXOSC7SEC130.8004298465.15E-19
UVMCell metabolism geneEXOSC7POLR2H0.8344867056.95E-22
UVMTSGEXOSC7NPRL20.8186454071.78E-20


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
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* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
KIRPEXOSC7EXOSC1-1.331511851621030.000133869703859091
KICHEXOSC7EXOSC101.249985227508940.000139892101287842
THCAEXOSC7EXOSC4-1.114636311491660.000207398306454043
STADEXOSC7EXOSC2-2.445419369149580.000280400272458792
KICHEXOSC7EXOSC11.881984280356220.000556409358978271
PRADEXOSC7SKIV2L2-1.277755502406920.000627023923094011
PRADEXOSC7EXOSC4-4.701820190221020.000648342999076925
ESCAEXOSC7EXOSC5-3.734480902088760.0009765625
LIHCEXOSC7EXOSC42.2699138767390.00228509329229136
ESCAEXOSC7DIS31.135289323319430.0029296875
BLCAEXOSC7MPHOSPH61.688071571105710.00457763671875
STADEXOSC7EXOSC3-1.951673942491260.00733334058895707
LIHCEXOSC7DIS31.395443255550590.00915034805063108
LIHCEXOSC7SKIV2L2-1.181107008793150.0175629065961987
KICHEXOSC7MPHOSPH6-1.166624990836980.0341737866401672
BRCAEXOSC7EXOSC1-3.222504859554421.01918341406027e-11
KIRCEXOSC7EXOSC5-2.769083517450651.09859684701495e-11
PRADEXOSC7EXOSC5-2.702223508517161.26099370313262e-05
BRCAEXOSC7EXOSC4-1.398442696402251.3684078260725e-15
THCAEXOSC7EXOSC5-1.769824630388151.55304155962675e-06
LUADEXOSC7EXOSC5-2.212633837138221.8775400044567e-09
KIRCEXOSC7EXOSC2-1.196510279660781.90834783211408e-08
THCAEXOSC7SKIV2L2-3.06964047540714.37037666427901e-06
LUADEXOSC7EXOSC4-2.390576655464585.24732369463512e-07
LUADEXOSC7EXOSC3-2.134104269488515.48906105617824e-05
LUADEXOSC7EXOSC10-5.481540886496836.13939009668372e-06
KIRPEXOSC7EXOSC5-1.578995711155756.79492950439454e-06
THCAEXOSC7EXOSC31.350516149083027.77019962091197e-05
LUADEXOSC7EXOSC2-1.645348278894998.78996847588964e-09
BRCAEXOSC7EXOSC5-1.249305539711619.66917351405126e-09


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with EXOSC7
EXOSC6, IP6K1, EXOSC1, EXOSC2, EXOSC4, DIS3, DIS3L, EXOSC3, APP, AICDA, EXOSC10, DXO, HECW2, rev, RPA3, RPA2, RPA1, TP53, RBM7, MPHOSPH6, EXOSC8, SKIV2L2, HBS1L, EXOSC9, EXOSC5, ZCCHC8, ZFC3H1, C1D, USP30, GIGYF2, IFI16, GDI1, HDAC1, TSNAX, MRPL50, MZT1, Exosc1, Rrbp1, LUM, RSRC1, SLIT2, LRRC47, DHPS, EFTUD2, ESR2, RECQL4, ATG16L1, BICD2, SNRNP70, CYLD, NFX1, BRD7, UBE2K, ESRRG, ARIH2, OBSL1, PLEKHA4, ENG, PTEN, ZC3H18, ESR1, MNDA, MKI67, NMRAL1, THOP1, EIF4E2, PARP8, nsp2, DDRGK1, FZR1, PRPF6, EIF4ENIF1, VIM, KIF24, TFIP11, C1orf35, KRT31, SNRNP48, EHMT2, UNKL, RBM22, RALYL, HOOK1, CCDC59, RBPMS, DGCR14, PRC1, PRRC2B, MIF, SNW1, ALG13, SUPT5H, DMRTB1, THOC1, LARP4, RPL21, DPYSL2, Sf3b2, Ssbp1, Fez2, Zcchc17, Bbs5, Ube2i, Nudt21, Cnn3, Mapre3, Mrps31, Dynlt1b, Tsnax, Htatsf1, Rbm14, Pspc1, Eif3g, Sf3a3, Nufip2, Grb2, Zc3h11a, Nhp2l1, SIRT6,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
EXOSC7KIRPchr34504892145048921CTMissense_Mutationp.R209W4
EXOSC7KIRPchr34503872445038724GCMissense_Mutationp.V134L4
EXOSC7LUADchr34503868245038682GTMissense_Mutationp.D120Y4
EXOSC7LUADchr34505281445052814GTMissense_Mutationp.V287F3
EXOSC7LUADchr34505281845052818GTMissense_Mutationp.G288V3
EXOSC7SKCMchr34503063545030635GAMissense_Mutationp.D21N3
EXOSC7UCECchr34504687245046872TCMissense_Mutationp.V194A3
EXOSC7UCECchr34504898345048983GASilentp.S2292
EXOSC7SKCMchr34504681745046817GAMissense_Mutationp.G176R2
EXOSC7STADchr34503865545038655CTMissense_Mutationp.R111W2
EXOSC7ESCAchr34504682245046822GASilent2
EXOSC7SKCMchr34504895945048959C-Frame_Shift_Delp.C221fs2
EXOSC7STADchr34503870945038709CTMissense_Mutationp.R129W2
EXOSC7ESCAchr34504682245046822GASilentp.S177S2
EXOSC7SKCMchr34505280145052801CASilentp.P282P2
EXOSC7SKCMchr34503065345030653CTMissense_Mutationp.R27C2
EXOSC7SKCMchr34504892345048923GASilentp.R209R2
EXOSC7LIHCchr34504681845046818GCMissense_Mutation2
EXOSC7BRCAchr34503063245030632GAMissense_Mutationp.E20K2
EXOSC7LIHCchr34504681845046818GCMissense_Mutationp.G176A2
EXOSC7HNSCchr34505275545052755ATMissense_Mutationp.H267L2
EXOSC7LIHCchr34504899945048999GTMissense_Mutationp.V235F2
EXOSC7UCECchr34503112545031125CAMissense_Mutationp.F81L2
EXOSC7SARCchr34504892545048925ATMissense_Mutationp.H210L2
EXOSC7LIHCchr34504680045046800T-Frame_Shift_Delp.V170fs2
EXOSC7UCECchr34503859945038599ACMissense_Mutationp.E92A2
EXOSC7SKCMchr34503064045030640CTSilentp.L22L1
EXOSC7LUADchr34503869045038690GCMissense_Mutationp.K122N1
EXOSC7COADchr34505275045052750AGSilentp.V265V1
EXOSC7SKCMchr34503110245031102CTMissense_Mutationp.P74S1
EXOSC7ESCAchr34504682245046822GASilentp.S1771
EXOSC7SKCMchr34504896145048961CTMissense_Mutationp.S222L1
EXOSC7KIRPchr34504902145049021TGMissense_Mutation1
EXOSC7KIRPchr34503872445038724GCMissense_Mutation1
EXOSC7BLCAchr34503861145038611GCMissense_Mutation1
EXOSC7KIRPchr34504892145048921CTMissense_Mutation1
EXOSC7STADchr34503068045030680GAMissense_Mutationp.E36K1
EXOSC7BLCAchr34503864745038647CTMissense_Mutation1
EXOSC7LUADchr34503064845030648AGMissense_Mutationp.D25G1
EXOSC7HNSCchr34505275545052755ATMissense_Mutation1
EXOSC7LIHCchr34505276145052761CTMissense_Mutation1
EXOSC7STADchr34503871045038710GAMissense_Mutationp.R129Q1
EXOSC7BLCAchr34503861145038611GCMissense_Mutationp.R96T1
EXOSC7READchr34503868145038681CTSilentp.V119V1
EXOSC7HNSCchr34504905845049058GASilent1
EXOSC7LIHCchr34504899945048999GTMissense_Mutation1
EXOSC7BLCAchr34505276845052768GCMissense_Mutationp.Q271H1
EXOSC7READchr34503071845030718CASilentp.S48S1
EXOSC7HNSCchr34505282245052822CTSilent1
EXOSC7UCECchr34504898345048983GASilentp.S229S1
EXOSC7SARCchr34504892545048925ATMissense_Mutation1
EXOSC7HNSCchr34504905845049058GASilentp.E254E1
EXOSC7SKCMchr34503863945038639CTSilentp.I105I1
EXOSC7UCECchr34503071945030719GAMissense_Mutationp.A49T1
EXOSC7CESCchr34505277545052775GCMissense_Mutation1
EXOSC7SARCchr34504308145043081GTMissense_Mutation1
EXOSC7SKCMchr34504679645046796CTNonsense_Mutationp.R169*1
EXOSC7COADchr34503869545038695TGMissense_Mutationp.L124R1
EXOSC7HNSCchr34505282245052822CTSilentp.F289F1
EXOSC7SKCMchr34503872745038727CTMissense_Mutationp.L135F1
EXOSC7COADchr34504896245048962GASilentp.S222S1
EXOSC7SKCMchr34504679645046796CTNonsense_Mutationp.R169X1

check buttonCopy number variation (CNV) of EXOSC7
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across EXOSC7
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
73495N/AAI791311AKAP13chr1586109896+EXOSC7chr345019582-
73495STADTCGA-BR-8081ANKRD28chr315836729-EXOSC7chr345030631+
73495N/AEC584247CDCP1chr345158508-EXOSC7chr345052222-
73495N/ACF138765COX7A2Lchr242596367-EXOSC7chr345053662+
73495N/ACD653303EVLchr14100479768+EXOSC7chr345022937+
85629N/ABI491255EXOSC7chr345052725-CDC42BPAchr1227469242+
73495N/ACB241820EXOSC7chr345053938-EXOSC7chr345052836+
102773N/AAW020214EXOSC7chr345052968+MELKchr936616838-
99892N/AAA526248EXOSC7chr345019582+SS18chr1823649469+
84621LUSCTCGA-66-2763-01AEXOSC7chr345017826+ZDHHC3chr344975476-
84621LUSCTCGA-O2-A5IB-01AEXOSC7chr345017826+ZDHHC3chr345000952-
73542PRADTCGA-KK-A6E3-01AREREchr18716032-EXOSC7chr345030632+


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
LUSCEXOSC70.005348806630335480.15
THYMEXOSC70.01121309662135230.3
LIHCEXOSC70.01442316806241520.38
KIRCEXOSC70.02238102365615660.56

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
LUSCEXOSC70.003695834002051940.12
THCAEXOSC70.03500799913287071
KIRPEXOSC70.008340078260566710.27
BRCAEXOSC70.03717836929163911
COADEXOSC70.04644399780731781

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source