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Translation Factor: EXOSC7 (NCBI Gene ID:23016) |
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Gene Summary |
Gene Information | Gene Name: EXOSC7 | Gene ID: 23016 | Gene Symbol | EXOSC7 | Gene ID | 23016 |
Gene Name | exosome component 7 | |
Synonyms | EAP1|RRP42|Rrp42p|hRrp42p|p8 | |
Cytomap | 3p21.31 | |
Type of Gene | protein-coding | |
Description | exosome complex component RRP42exosome complex exonuclease RRP42ribosomal RNA-processing protein 42 | |
Modification date | 20200313 | |
UniProtAcc | Q15024 |
Child GO biological process term(s) under GO:0006412 |
GO ID | GO term |
GO:0017148 | Negative regulation of translation |
GO:0006417 | Regulation of translation |
GO:0006412 | Translation |
Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Inferred gene age of translation factor. |
Gene | Inferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25 |
EXOSC7 | >1119.25 |
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We searched PubMed using 'EXOSC7[title] AND translation [title] AND human.' |
Gene | Title | PMID |
EXOSC7 | . | . |
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Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. For more annotations, please visit our ExonSkipDB. |
Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ENST | Exon skip start (DNA) | Exon Skip end (DNA) | ORF |
ENST00000265564 | 45030631 | 45030733 | In-frame |
Exon skipping position in the amino acid sequence. |
ENST | Exon skip start (DNA) | Exon Skip end (DNA) | Len(transcript seq) | Exon skip start (mRNA) | Exon Skip end (mRNA) | Len(amino acid seq) | Exon skip start (AA) | Exon Skip end (AA) |
ENST00000265564 | 45030631 | 45030733 | 1072 | 106 | 207 | 291 | 19 | 53 |
Potentially (partially) lost protein functional features of UniProt. |
UniProtAcc | Exon skip start (AA) | Exon Skip end (AA) | Function feature start (AA) | Function feature end (AA) | Functional feature type | Functional feature desc. |
Q15024 | 19 | 53 | 2 | 291 | Chain | ID=PRO_0000139963;Note=Exosome complex component RRP42 |
Q15024 | 19 | 53 | 8 | 19 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2NN6 |
Q15024 | 19 | 53 | 24 | 26 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2NN6 |
Q15024 | 19 | 53 | 36 | 39 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2NN6 |
Q15024 | 19 | 53 | 45 | 53 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2NN6 |
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Gene expression level across TCGA pancancer |
Gene expression level across GTEx pantissue |
Expression level of gene isoforms across TCGA pancancer |
Expression level of gene isoforms across GTEx pantissue |
Cancer(tissue) type-specific expression level of Translation factor using z-score distriution |
Differential expression between tumor and matched normal (in the cancer types with more than 10 matched samples) |
Cancer type | Translation factor | FC | adj.pval |
KICH | EXOSC7 | 1.11626022550606 | 0.00963503122329712 |
UCEC | EXOSC7 | 1.37141709218626 | 0.015625 |
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Translation factor expression regulation through miRNA binding |
Cancer type | Gene | miRNA | TargetScan binding score (Context++ score percentile) | Coefficient | Pvalue |
ACC | EXOSC7 | hsa-miR-155-5p | 91 | 0.306085686465433 | 0.00626921067188704 |
Translation factor expression regulation through methylation in the promoter of Translation factor |
Cancer type | Gene | methyl group b | methyl group a | DEG pval | avg methyl in b | avg methyl in a | avg exp in b | avg exp in a |
Translation factor expression regulation through methylation in the gene body of Translation factor (positive regulation) |
Cancer type | Gene | methyl group b | methyl group a | DEG pval | avg methyl in b | avg methyl in a | avg exp in b | avg exp in a |
THYM | EXOSC7 | 2 | 1 | 0.0477973106813848 | 0.287415507246377 | 0.166951515151515 | -0.378287831855174 | -0.795191072962618 |
Translation factor expression regulation through copy number variation of Translation factor |
Cancer type | Gene | Coefficient | Pvalue |
LUSC | EXOSC7 | -0.100070157 | 0.024434425 |
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Strongly correlated genes belong to cellular important gene groups with EXOSC7 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green) |
Cancer type | Gene group | Translation factor | Correlated gene | Coefficient | Pvalue |
DLBC | Cell metabolism gene | EXOSC7 | POLR2F | 0.802771903 | 6.76E-12 |
DLBC | Cell metabolism gene | EXOSC7 | LSM3 | 0.803882306 | 6.01E-12 |
DLBC | Cell metabolism gene | EXOSC7 | POLR2L | 0.806774175 | 4.42E-12 |
DLBC | Cell metabolism gene | EXOSC7 | PSMB3 | 0.810148917 | 3.06E-12 |
DLBC | Cell metabolism gene | EXOSC7 | POLR2I | 0.813697245 | 2.07E-12 |
DLBC | Cell metabolism gene | EXOSC7 | PPCDC | 0.815492258 | 1.69E-12 |
DLBC | Cell metabolism gene | EXOSC7 | PMPCA | 0.823225163 | 6.89E-13 |
DLBC | Cell metabolism gene | EXOSC7 | TIMM13 | 0.830358321 | 2.90E-13 |
DLBC | Epifactor | EXOSC7 | SS18L2 | 0.885169142 | 6.81E-17 |
DLBC | IUPHAR | EXOSC7 | SLC25A26 | 0.808469947 | 3.68E-12 |
DLBC | TF | EXOSC7 | THAP3 | 0.800397764 | 8.65E-12 |
DLBC | TSG | EXOSC7 | TSSC4 | 0.811736152 | 2.57E-12 |
DLBC | TSG | EXOSC7 | GADD45GIP1 | 0.812515359 | 2.36E-12 |
PCPG | IUPHAR | EXOSC7 | CAMK1 | 0.830704535 | 6.15E-49 |
PCPG | Kinase | EXOSC7 | CAMK1 | 0.830704535 | 6.15E-49 |
THYM | Cell metabolism gene | EXOSC7 | ACOT8 | 0.800105876 | 2.10E-28 |
THYM | Cell metabolism gene | EXOSC7 | DPM2 | 0.800504311 | 1.89E-28 |
THYM | Cell metabolism gene | EXOSC7 | SEC13 | 0.801464285 | 1.46E-28 |
THYM | Cell metabolism gene | EXOSC7 | POLR2I | 0.801707232 | 1.36E-28 |
THYM | Cell metabolism gene | EXOSC7 | PSMD9 | 0.80273879 | 1.03E-28 |
THYM | Cell metabolism gene | EXOSC7 | SNRPD2 | 0.803944534 | 7.42E-29 |
THYM | Cell metabolism gene | EXOSC7 | TIMM8B | 0.805605872 | 4.70E-29 |
THYM | Cell metabolism gene | EXOSC7 | PGLS | 0.807024433 | 3.17E-29 |
THYM | Cell metabolism gene | EXOSC7 | PSMB1 | 0.816608256 | 2.02E-30 |
THYM | Cell metabolism gene | EXOSC7 | POLR2F | 0.821917389 | 4.11E-31 |
THYM | Cell metabolism gene | EXOSC7 | PSMC3 | 0.842453897 | 5.04E-34 |
THYM | Epifactor | EXOSC7 | PRPF31 | 0.822829231 | 3.11E-31 |
THYM | IUPHAR | EXOSC7 | PSMB1 | 0.816608256 | 2.02E-30 |
THYM | TF | EXOSC7 | ZNF428 | 0.822214631 | 3.75E-31 |
THYM | TSG | EXOSC7 | TSSC4 | 0.8119994 | 7.75E-30 |
UCS | Cell metabolism gene | EXOSC7 | ACOT8 | 0.800105876 | 2.10E-28 |
UCS | Cell metabolism gene | EXOSC7 | DPM2 | 0.800504311 | 1.89E-28 |
UCS | Cell metabolism gene | EXOSC7 | SEC13 | 0.801464285 | 1.46E-28 |
UCS | Cell metabolism gene | EXOSC7 | POLR2I | 0.801707232 | 1.36E-28 |
UCS | Cell metabolism gene | EXOSC7 | PSMD9 | 0.80273879 | 1.03E-28 |
UCS | Cell metabolism gene | EXOSC7 | SNRPD2 | 0.803944534 | 7.42E-29 |
UCS | Cell metabolism gene | EXOSC7 | TIMM8B | 0.805605872 | 4.70E-29 |
UCS | Cell metabolism gene | EXOSC7 | PGLS | 0.807024433 | 3.17E-29 |
UCS | Cell metabolism gene | EXOSC7 | PSMB1 | 0.816608256 | 2.02E-30 |
UCS | Cell metabolism gene | EXOSC7 | POLR2F | 0.821917389 | 4.11E-31 |
UCS | Cell metabolism gene | EXOSC7 | PSMC3 | 0.842453897 | 5.04E-34 |
UCS | Epifactor | EXOSC7 | PRPF31 | 0.822829231 | 3.11E-31 |
UCS | IUPHAR | EXOSC7 | PSMB1 | 0.816608256 | 2.02E-30 |
UCS | TF | EXOSC7 | ZNF428 | 0.822214631 | 3.75E-31 |
UCS | TSG | EXOSC7 | TSSC4 | 0.8119994 | 7.75E-30 |
UVM | Cell metabolism gene | EXOSC7 | SEC13 | 0.800429846 | 5.15E-19 |
UVM | Cell metabolism gene | EXOSC7 | POLR2H | 0.834486705 | 6.95E-22 |
UVM | TSG | EXOSC7 | NPRL2 | 0.818645407 | 1.78E-20 |
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Protein 3D structure Visit iCn3D. |
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Protein-protein interaction networks * Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P)) |
Overlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P)) |
* Edge colors based on TCGA cancer types. |
* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P)) |
Cancer type | Translation factor | Interacting protein coding gene | FC | adj.pval |
KIRP | EXOSC7 | EXOSC1 | -1.33151185162103 | 0.000133869703859091 |
KICH | EXOSC7 | EXOSC10 | 1.24998522750894 | 0.000139892101287842 |
THCA | EXOSC7 | EXOSC4 | -1.11463631149166 | 0.000207398306454043 |
STAD | EXOSC7 | EXOSC2 | -2.44541936914958 | 0.000280400272458792 |
KICH | EXOSC7 | EXOSC1 | 1.88198428035622 | 0.000556409358978271 |
PRAD | EXOSC7 | SKIV2L2 | -1.27775550240692 | 0.000627023923094011 |
PRAD | EXOSC7 | EXOSC4 | -4.70182019022102 | 0.000648342999076925 |
ESCA | EXOSC7 | EXOSC5 | -3.73448090208876 | 0.0009765625 |
LIHC | EXOSC7 | EXOSC4 | 2.269913876739 | 0.00228509329229136 |
ESCA | EXOSC7 | DIS3 | 1.13528932331943 | 0.0029296875 |
BLCA | EXOSC7 | MPHOSPH6 | 1.68807157110571 | 0.00457763671875 |
STAD | EXOSC7 | EXOSC3 | -1.95167394249126 | 0.00733334058895707 |
LIHC | EXOSC7 | DIS3 | 1.39544325555059 | 0.00915034805063108 |
LIHC | EXOSC7 | SKIV2L2 | -1.18110700879315 | 0.0175629065961987 |
KICH | EXOSC7 | MPHOSPH6 | -1.16662499083698 | 0.0341737866401672 |
BRCA | EXOSC7 | EXOSC1 | -3.22250485955442 | 1.01918341406027e-11 |
KIRC | EXOSC7 | EXOSC5 | -2.76908351745065 | 1.09859684701495e-11 |
PRAD | EXOSC7 | EXOSC5 | -2.70222350851716 | 1.26099370313262e-05 |
BRCA | EXOSC7 | EXOSC4 | -1.39844269640225 | 1.3684078260725e-15 |
THCA | EXOSC7 | EXOSC5 | -1.76982463038815 | 1.55304155962675e-06 |
LUAD | EXOSC7 | EXOSC5 | -2.21263383713822 | 1.8775400044567e-09 |
KIRC | EXOSC7 | EXOSC2 | -1.19651027966078 | 1.90834783211408e-08 |
THCA | EXOSC7 | SKIV2L2 | -3.0696404754071 | 4.37037666427901e-06 |
LUAD | EXOSC7 | EXOSC4 | -2.39057665546458 | 5.24732369463512e-07 |
LUAD | EXOSC7 | EXOSC3 | -2.13410426948851 | 5.48906105617824e-05 |
LUAD | EXOSC7 | EXOSC10 | -5.48154088649683 | 6.13939009668372e-06 |
KIRP | EXOSC7 | EXOSC5 | -1.57899571115575 | 6.79492950439454e-06 |
THCA | EXOSC7 | EXOSC3 | 1.35051614908302 | 7.77019962091197e-05 |
LUAD | EXOSC7 | EXOSC2 | -1.64534827889499 | 8.78996847588964e-09 |
BRCA | EXOSC7 | EXOSC5 | -1.24930553971161 | 9.66917351405126e-09 |
Protein-protein interactors with this translation factor (BIOGRID-3.4.160) |
PPI interactors with EXOSC7 |
EXOSC6, IP6K1, EXOSC1, EXOSC2, EXOSC4, DIS3, DIS3L, EXOSC3, APP, AICDA, EXOSC10, DXO, HECW2, rev, RPA3, RPA2, RPA1, TP53, RBM7, MPHOSPH6, EXOSC8, SKIV2L2, HBS1L, EXOSC9, EXOSC5, ZCCHC8, ZFC3H1, C1D, USP30, GIGYF2, IFI16, GDI1, HDAC1, TSNAX, MRPL50, MZT1, Exosc1, Rrbp1, LUM, RSRC1, SLIT2, LRRC47, DHPS, EFTUD2, ESR2, RECQL4, ATG16L1, BICD2, SNRNP70, CYLD, NFX1, BRD7, UBE2K, ESRRG, ARIH2, OBSL1, PLEKHA4, ENG, PTEN, ZC3H18, ESR1, MNDA, MKI67, NMRAL1, THOP1, EIF4E2, PARP8, nsp2, DDRGK1, FZR1, PRPF6, EIF4ENIF1, VIM, KIF24, TFIP11, C1orf35, KRT31, SNRNP48, EHMT2, UNKL, RBM22, RALYL, HOOK1, CCDC59, RBPMS, DGCR14, PRC1, PRRC2B, MIF, SNW1, ALG13, SUPT5H, DMRTB1, THOC1, LARP4, RPL21, DPYSL2, Sf3b2, Ssbp1, Fez2, Zcchc17, Bbs5, Ube2i, Nudt21, Cnn3, Mapre3, Mrps31, Dynlt1b, Tsnax, Htatsf1, Rbm14, Pspc1, Eif3g, Sf3a3, Nufip2, Grb2, Zc3h11a, Nhp2l1, SIRT6, |
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Clinically associated variants from ClinVar. |
Gene | Chr | Position | RefSeq | VarSeq | RefSeeq | VarType | Pathogenic | Disease | VarInfo |
nsSNVs with sample frequency (size of circle) from TCGA 33 cancers. |
SNVs and Indels |
Gene | Cancer type | Chromosome | Start | End | RefSeeq | MutSeq | Mutation type | AAchange | # samples |
EXOSC7 | KIRP | chr3 | 45048921 | 45048921 | C | T | Missense_Mutation | p.R209W | 4 |
EXOSC7 | KIRP | chr3 | 45038724 | 45038724 | G | C | Missense_Mutation | p.V134L | 4 |
EXOSC7 | LUAD | chr3 | 45038682 | 45038682 | G | T | Missense_Mutation | p.D120Y | 4 |
EXOSC7 | LUAD | chr3 | 45052814 | 45052814 | G | T | Missense_Mutation | p.V287F | 3 |
EXOSC7 | LUAD | chr3 | 45052818 | 45052818 | G | T | Missense_Mutation | p.G288V | 3 |
EXOSC7 | SKCM | chr3 | 45030635 | 45030635 | G | A | Missense_Mutation | p.D21N | 3 |
EXOSC7 | UCEC | chr3 | 45046872 | 45046872 | T | C | Missense_Mutation | p.V194A | 3 |
EXOSC7 | UCEC | chr3 | 45048983 | 45048983 | G | A | Silent | p.S229 | 2 |
EXOSC7 | SKCM | chr3 | 45046817 | 45046817 | G | A | Missense_Mutation | p.G176R | 2 |
EXOSC7 | STAD | chr3 | 45038655 | 45038655 | C | T | Missense_Mutation | p.R111W | 2 |
EXOSC7 | ESCA | chr3 | 45046822 | 45046822 | G | A | Silent | 2 | |
EXOSC7 | SKCM | chr3 | 45048959 | 45048959 | C | - | Frame_Shift_Del | p.C221fs | 2 |
EXOSC7 | STAD | chr3 | 45038709 | 45038709 | C | T | Missense_Mutation | p.R129W | 2 |
EXOSC7 | ESCA | chr3 | 45046822 | 45046822 | G | A | Silent | p.S177S | 2 |
EXOSC7 | SKCM | chr3 | 45052801 | 45052801 | C | A | Silent | p.P282P | 2 |
EXOSC7 | SKCM | chr3 | 45030653 | 45030653 | C | T | Missense_Mutation | p.R27C | 2 |
EXOSC7 | SKCM | chr3 | 45048923 | 45048923 | G | A | Silent | p.R209R | 2 |
EXOSC7 | LIHC | chr3 | 45046818 | 45046818 | G | C | Missense_Mutation | 2 | |
EXOSC7 | BRCA | chr3 | 45030632 | 45030632 | G | A | Missense_Mutation | p.E20K | 2 |
EXOSC7 | LIHC | chr3 | 45046818 | 45046818 | G | C | Missense_Mutation | p.G176A | 2 |
EXOSC7 | HNSC | chr3 | 45052755 | 45052755 | A | T | Missense_Mutation | p.H267L | 2 |
EXOSC7 | LIHC | chr3 | 45048999 | 45048999 | G | T | Missense_Mutation | p.V235F | 2 |
EXOSC7 | UCEC | chr3 | 45031125 | 45031125 | C | A | Missense_Mutation | p.F81L | 2 |
EXOSC7 | SARC | chr3 | 45048925 | 45048925 | A | T | Missense_Mutation | p.H210L | 2 |
EXOSC7 | LIHC | chr3 | 45046800 | 45046800 | T | - | Frame_Shift_Del | p.V170fs | 2 |
EXOSC7 | UCEC | chr3 | 45038599 | 45038599 | A | C | Missense_Mutation | p.E92A | 2 |
EXOSC7 | SKCM | chr3 | 45030640 | 45030640 | C | T | Silent | p.L22L | 1 |
EXOSC7 | LUAD | chr3 | 45038690 | 45038690 | G | C | Missense_Mutation | p.K122N | 1 |
EXOSC7 | COAD | chr3 | 45052750 | 45052750 | A | G | Silent | p.V265V | 1 |
EXOSC7 | SKCM | chr3 | 45031102 | 45031102 | C | T | Missense_Mutation | p.P74S | 1 |
EXOSC7 | ESCA | chr3 | 45046822 | 45046822 | G | A | Silent | p.S177 | 1 |
EXOSC7 | SKCM | chr3 | 45048961 | 45048961 | C | T | Missense_Mutation | p.S222L | 1 |
EXOSC7 | KIRP | chr3 | 45049021 | 45049021 | T | G | Missense_Mutation | 1 | |
EXOSC7 | KIRP | chr3 | 45038724 | 45038724 | G | C | Missense_Mutation | 1 | |
EXOSC7 | BLCA | chr3 | 45038611 | 45038611 | G | C | Missense_Mutation | 1 | |
EXOSC7 | KIRP | chr3 | 45048921 | 45048921 | C | T | Missense_Mutation | 1 | |
EXOSC7 | STAD | chr3 | 45030680 | 45030680 | G | A | Missense_Mutation | p.E36K | 1 |
EXOSC7 | BLCA | chr3 | 45038647 | 45038647 | C | T | Missense_Mutation | 1 | |
EXOSC7 | LUAD | chr3 | 45030648 | 45030648 | A | G | Missense_Mutation | p.D25G | 1 |
EXOSC7 | HNSC | chr3 | 45052755 | 45052755 | A | T | Missense_Mutation | 1 | |
EXOSC7 | LIHC | chr3 | 45052761 | 45052761 | C | T | Missense_Mutation | 1 | |
EXOSC7 | STAD | chr3 | 45038710 | 45038710 | G | A | Missense_Mutation | p.R129Q | 1 |
EXOSC7 | BLCA | chr3 | 45038611 | 45038611 | G | C | Missense_Mutation | p.R96T | 1 |
EXOSC7 | READ | chr3 | 45038681 | 45038681 | C | T | Silent | p.V119V | 1 |
EXOSC7 | HNSC | chr3 | 45049058 | 45049058 | G | A | Silent | 1 | |
EXOSC7 | LIHC | chr3 | 45048999 | 45048999 | G | T | Missense_Mutation | 1 | |
EXOSC7 | BLCA | chr3 | 45052768 | 45052768 | G | C | Missense_Mutation | p.Q271H | 1 |
EXOSC7 | READ | chr3 | 45030718 | 45030718 | C | A | Silent | p.S48S | 1 |
EXOSC7 | HNSC | chr3 | 45052822 | 45052822 | C | T | Silent | 1 | |
EXOSC7 | UCEC | chr3 | 45048983 | 45048983 | G | A | Silent | p.S229S | 1 |
EXOSC7 | SARC | chr3 | 45048925 | 45048925 | A | T | Missense_Mutation | 1 | |
EXOSC7 | HNSC | chr3 | 45049058 | 45049058 | G | A | Silent | p.E254E | 1 |
EXOSC7 | SKCM | chr3 | 45038639 | 45038639 | C | T | Silent | p.I105I | 1 |
EXOSC7 | UCEC | chr3 | 45030719 | 45030719 | G | A | Missense_Mutation | p.A49T | 1 |
EXOSC7 | CESC | chr3 | 45052775 | 45052775 | G | C | Missense_Mutation | 1 | |
EXOSC7 | SARC | chr3 | 45043081 | 45043081 | G | T | Missense_Mutation | 1 | |
EXOSC7 | SKCM | chr3 | 45046796 | 45046796 | C | T | Nonsense_Mutation | p.R169* | 1 |
EXOSC7 | COAD | chr3 | 45038695 | 45038695 | T | G | Missense_Mutation | p.L124R | 1 |
EXOSC7 | HNSC | chr3 | 45052822 | 45052822 | C | T | Silent | p.F289F | 1 |
EXOSC7 | SKCM | chr3 | 45038727 | 45038727 | C | T | Missense_Mutation | p.L135F | 1 |
EXOSC7 | COAD | chr3 | 45048962 | 45048962 | G | A | Silent | p.S222S | 1 |
EXOSC7 | SKCM | chr3 | 45046796 | 45046796 | C | T | Nonsense_Mutation | p.R169X | 1 |
Copy number variation (CNV) of EXOSC7 * Click on the image to open the original image in a new window. |
Fusion gene breakpoints (product of the structural variants (SVs)) across EXOSC7 * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion genes with this translation factor from FusionGDB2.0. |
FusionGDB2 ID | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
73495 | N/A | AI791311 | AKAP13 | chr15 | 86109896 | + | EXOSC7 | chr3 | 45019582 | - |
73495 | STAD | TCGA-BR-8081 | ANKRD28 | chr3 | 15836729 | - | EXOSC7 | chr3 | 45030631 | + |
73495 | N/A | EC584247 | CDCP1 | chr3 | 45158508 | - | EXOSC7 | chr3 | 45052222 | - |
73495 | N/A | CF138765 | COX7A2L | chr2 | 42596367 | - | EXOSC7 | chr3 | 45053662 | + |
73495 | N/A | CD653303 | EVL | chr14 | 100479768 | + | EXOSC7 | chr3 | 45022937 | + |
85629 | N/A | BI491255 | EXOSC7 | chr3 | 45052725 | - | CDC42BPA | chr1 | 227469242 | + |
73495 | N/A | CB241820 | EXOSC7 | chr3 | 45053938 | - | EXOSC7 | chr3 | 45052836 | + |
102773 | N/A | AW020214 | EXOSC7 | chr3 | 45052968 | + | MELK | chr9 | 36616838 | - |
99892 | N/A | AA526248 | EXOSC7 | chr3 | 45019582 | + | SS18 | chr18 | 23649469 | + |
84621 | LUSC | TCGA-66-2763-01A | EXOSC7 | chr3 | 45017826 | + | ZDHHC3 | chr3 | 44975476 | - |
84621 | LUSC | TCGA-O2-A5IB-01A | EXOSC7 | chr3 | 45017826 | + | ZDHHC3 | chr3 | 45000952 | - |
73542 | PRAD | TCGA-KK-A6E3-01A | RERE | chr1 | 8716032 | - | EXOSC7 | chr3 | 45030632 | + |
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Kaplan-Meier plots with logrank tests of overall survival (OS) |
Cancer type | Translation factor | Coefficent | Hazard ratio | Wald test pval | Likelihool ratio pval | Logrank test pval | # samples |
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Differential gene expression between female and male. (Wilcoxon test, pval<0.05) |
Cancer type | Translation factor | pval | adj.p |
LUSC | EXOSC7 | 0.00534880663033548 | 0.15 |
THYM | EXOSC7 | 0.0112130966213523 | 0.3 |
LIHC | EXOSC7 | 0.0144231680624152 | 0.38 |
KIRC | EXOSC7 | 0.0223810236561566 | 0.56 |
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Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05) |
Cancer type | Translation factor | pval | adj.p |
LUSC | EXOSC7 | 0.00369583400205194 | 0.12 |
THCA | EXOSC7 | 0.0350079991328707 | 1 |
KIRP | EXOSC7 | 0.00834007826056671 | 0.27 |
BRCA | EXOSC7 | 0.0371783692916391 | 1 |
COAD | EXOSC7 | 0.0464439978073178 | 1 |
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Drugs targeting genes involved in this translation factor. (DrugBank Version 5.1.8 2021-05-08) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Diseases associated with this translation factor. (DisGeNet 4.0) |
Disease ID | Disease Name | # PubMeds | Disease source |