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Translation Factor: PLXNB2 (NCBI Gene ID:23654) |
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Gene Summary |
| Gene Information | Gene Name: PLXNB2 | Gene ID: 23654 | Gene Symbol | PLXNB2 | Gene ID | 23654 |
| Gene Name | plexin B2 | |
| Synonyms | MM1|Nbla00445|PLEXB2|dJ402G11.3 | |
| Cytomap | 22q13.33 | |
| Type of Gene | protein-coding | |
| Description | plexin-B2 | |
| Modification date | 20200313 | |
| UniProtAcc | O15031 | |
Child GO biological process term(s) under GO:0006412 |
| GO ID | GO term |
| GO:0006417 | Regulation of translation |
| GO:0045727 | Positive regulation of translation |
| GO:0006412 | Translation |
Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | PLXNB2 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | 16122393 |
| Hgene | PLXNB2 | GO:0010976 | positive regulation of neuron projection development | 16122393 |
Inferred gene age of translation factor. |
| Gene | Inferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25 |
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We searched PubMed using 'PLXNB2[title] AND translation [title] AND human.' |
| Gene | Title | PMID |
| PLXNB2 | . | . |
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Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. For more annotations, please visit our ExonSkipDB. |
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Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ENST | Exon skip start (DNA) | Exon Skip end (DNA) | ORF |
| ENST00000449103 | 50715270 | 50715335 | Frame-shift |
| ENST00000359337 | 50715270 | 50715335 | Frame-shift |
| ENST00000359337 | 50718058 | 50718205 | In-frame |
| ENST00000449103 | 50718058 | 50718205 | In-frame |
| ENST00000449103 | 50718433 | 50718500 | Frame-shift |
| ENST00000359337 | 50718433 | 50718500 | Frame-shift |
| ENST00000359337 | 50720612 | 50720742 | Frame-shift |
| ENST00000449103 | 50720612 | 50720742 | Frame-shift |
| ENST00000359337 | 50721478 | 50721615 | Frame-shift |
| ENST00000449103 | 50721478 | 50721615 | Frame-shift |
| ENST00000359337 | 50722560 | 50722642 | Frame-shift |
| ENST00000449103 | 50722560 | 50722642 | Frame-shift |
| ENST00000449103 | 50723001 | 50723094 | In-frame |
| ENST00000359337 | 50723001 | 50723094 | In-frame |
| ENST00000449103 | 50724228 | 50724330 | In-frame |
| ENST00000359337 | 50724228 | 50724330 | In-frame |
| ENST00000359337 | 50725539 | 50725693 | Frame-shift |
| ENST00000449103 | 50725539 | 50725693 | Frame-shift |
| ENST00000359337 | 50726095 | 50726222 | Frame-shift |
| ENST00000449103 | 50726095 | 50726222 | Frame-shift |
| ENST00000449103 | 50727945 | 50729026 | 3UTR-3CDS |
| ENST00000359337 | 50727945 | 50729026 | 3UTR-3CDS |
| ENST00000359337 | 50733147 | 50733207 | 3UTR-3UTR |
| ENST00000449103 | 50733154 | 50733207 | 3UTR-3UTR |
Exon skipping position in the amino acid sequence. |
| ENST | Exon skip start (DNA) | Exon Skip end (DNA) | Len(transcript seq) | Exon skip start (mRNA) | Exon Skip end (mRNA) | Len(amino acid seq) | Exon skip start (AA) | Exon Skip end (AA) |
| ENST00000359337 | 50718058 | 50718205 | 6368 | 4352 | 4498 | 1838 | 1414 | 1463 |
| ENST00000449103 | 50718058 | 50718205 | 6400 | 4384 | 4530 | 1838 | 1414 | 1463 |
| ENST00000359337 | 50723001 | 50723094 | 6368 | 2198 | 2290 | 1838 | 696 | 727 |
| ENST00000449103 | 50723001 | 50723094 | 6400 | 2230 | 2322 | 1838 | 696 | 727 |
| ENST00000359337 | 50724228 | 50724330 | 6368 | 2096 | 2197 | 1838 | 662 | 696 |
| ENST00000449103 | 50724228 | 50724330 | 6400 | 2128 | 2229 | 1838 | 662 | 696 |
Potentially (partially) lost protein functional features of UniProt. |
| UniProtAcc | Exon skip start (AA) | Exon Skip end (AA) | Function feature start (AA) | Function feature end (AA) | Functional feature type | Functional feature desc. |
| O15031 | 696 | 727 | 20 | 1838 | Chain | ID=PRO_0000024673;Note=Plexin-B2 |
| O15031 | 1414 | 1463 | 20 | 1838 | Chain | ID=PRO_0000024673;Note=Plexin-B2 |
| O15031 | 662 | 696 | 20 | 1838 | Chain | ID=PRO_0000024673;Note=Plexin-B2 |
| O15031 | 696 | 727 | 20 | 1838 | Chain | ID=PRO_0000024673;Note=Plexin-B2 |
| O15031 | 1414 | 1463 | 20 | 1838 | Chain | ID=PRO_0000024673;Note=Plexin-B2 |
| O15031 | 662 | 696 | 20 | 1838 | Chain | ID=PRO_0000024673;Note=Plexin-B2 |
| O15031 | 696 | 727 | 20 | 1197 | Topological domain | Note=Extracellular;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| O15031 | 662 | 696 | 20 | 1197 | Topological domain | Note=Extracellular;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| O15031 | 696 | 727 | 20 | 1197 | Topological domain | Note=Extracellular;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| O15031 | 662 | 696 | 20 | 1197 | Topological domain | Note=Extracellular;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| O15031 | 1414 | 1463 | 1219 | 1838 | Topological domain | Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| O15031 | 1414 | 1463 | 1219 | 1838 | Topological domain | Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| O15031 | 1414 | 1463 | 1462 | 1469 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:4E71 |
| O15031 | 1414 | 1463 | 1462 | 1469 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:4E71 |
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Gene expression level across TCGA pancancer |
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Gene expression level across GTEx pantissue |
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Expression level of gene isoforms across TCGA pancancer |
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Expression level of gene isoforms across GTEx pantissue |
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Cancer(tissue) type-specific expression level of Translation factor using z-score distriution |
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Differential expression between tumor and matched normal (in the cancer types with more than 10 matched samples) |
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| Cancer type | Translation factor | FC | adj.pval |
| STAD | PLXNB2 | 1.0704219528128 | 0.0093395933508873 |
| THCA | PLXNB2 | 2.68605428505058 | 7.49003326178242e-10 |
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Translation factor expression regulation through miRNA binding |
| Cancer type | Gene | miRNA | TargetScan binding score (Context++ score percentile) | Coefficient | Pvalue |
Translation factor expression regulation through methylation in the promoter of Translation factor |
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| Cancer type | Gene | methyl group b | methyl group a | DEG pval | avg methyl in b | avg methyl in a | avg exp in b | avg exp in a |
| KIRC | PLXNB2 | 3 | 2 | 0.0134505554092175 | 0.649385731918239 | 0.572006688596491 | -0.51675882088348 | -0.643346824855674 |
| LUAD | PLXNB2 | 3 | 2 | 0.0269100418647071 | 0.667451883425245 | 0.568503515625001 | 0.073177710748138 | 0.244407122512773 |
Translation factor expression regulation through methylation in the gene body of Translation factor (positive regulation) |
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| Cancer type | Gene | methyl group b | methyl group a | DEG pval | avg methyl in b | avg methyl in a | avg exp in b | avg exp in a |
| UCEC | PLXNB2 | 3 | 2 | 0.04505079509938 | 0.687464407612032 | 0.550965057471265 | -0.560184839674956 | -0.958049871109493 |
Translation factor expression regulation through copy number variation of Translation factor |
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| Cancer type | Gene | Coefficient | Pvalue |
| PCPG | PLXNB2 | -0.088996448 | 0.027117153 |
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Strongly correlated genes belong to cellular important gene groups with PLXNB2 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green) |
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| Cancer type | Gene group | Translation factor | Correlated gene | Coefficient | Pvalue |
| THYM | Cell metabolism gene | PLXNB2 | PISD | 0.82810868 | 5.99E-32 |
| THYM | Cell metabolism gene | PLXNB2 | AGRN | 0.842137408 | 5.63E-34 |
| THYM | Cell metabolism gene | PLXNB2 | FKBP9 | 0.812592861 | 6.53E-30 |
| THYM | Cell metabolism gene | PLXNB2 | UGGT2 | 0.824504098 | 1.85E-31 |
| THYM | Cell metabolism gene | PLXNB2 | SDC4 | 0.830988308 | 2.38E-32 |
| THYM | CGC | PLXNB2 | FKBP9 | 0.812592861 | 6.53E-30 |
| THYM | CGC | PLXNB2 | ZNRF3 | 0.827264967 | 7.82E-32 |
| THYM | CGC | PLXNB2 | SDC4 | 0.830988308 | 2.38E-32 |
| THYM | IUPHAR | PLXNB2 | LTBR | 0.817966916 | 1.35E-30 |
| THYM | IUPHAR | PLXNB2 | PISD | 0.82810868 | 5.99E-32 |
| THYM | IUPHAR | PLXNB2 | ITGA3 | 0.841919066 | 6.08E-34 |
| THYM | IUPHAR | PLXNB2 | MMP14 | 0.810347829 | 1.24E-29 |
| THYM | IUPHAR | PLXNB2 | CAPN2 | 0.805938339 | 4.28E-29 |
| THYM | TF | PLXNB2 | KLF11 | 0.823573975 | 2.47E-31 |
| UCS | Cell metabolism gene | PLXNB2 | AGRN | 0.842137408 | 5.63E-34 |
| UCS | Cell metabolism gene | PLXNB2 | SDC4 | 0.830988308 | 2.38E-32 |
| UCS | Cell metabolism gene | PLXNB2 | PISD | 0.82810868 | 5.99E-32 |
| UCS | Cell metabolism gene | PLXNB2 | UGGT2 | 0.824504098 | 1.85E-31 |
| UCS | Cell metabolism gene | PLXNB2 | FKBP9 | 0.812592861 | 6.53E-30 |
| UCS | CGC | PLXNB2 | ZNRF3 | 0.827264967 | 7.82E-32 |
| UCS | CGC | PLXNB2 | SDC4 | 0.830988308 | 2.38E-32 |
| UCS | CGC | PLXNB2 | FKBP9 | 0.812592861 | 6.53E-30 |
| UCS | IUPHAR | PLXNB2 | PISD | 0.82810868 | 5.99E-32 |
| UCS | IUPHAR | PLXNB2 | LTBR | 0.817966916 | 1.35E-30 |
| UCS | IUPHAR | PLXNB2 | ITGA3 | 0.841919066 | 6.08E-34 |
| UCS | IUPHAR | PLXNB2 | MMP14 | 0.810347829 | 1.24E-29 |
| UCS | IUPHAR | PLXNB2 | CAPN2 | 0.805938339 | 4.28E-29 |
| UCS | TF | PLXNB2 | KLF11 | 0.823573975 | 2.47E-31 |
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Protein 3D structureVisit iCn3D. |
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Protein-protein interaction networks * Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P)) |
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Overlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P)) |
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![]() * Edge colors based on TCGA cancer types. |
* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P)) |
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| Cancer type | Translation factor | Interacting protein coding gene | FC | adj.pval |
| LUSC | PLXNB2 | RND3 | 1.04818253915572 | 0.000102202753672845 |
| BLCA | PLXNB2 | RND3 | -1.46994698351353 | 0.000335693359375 |
| KICH | PLXNB2 | SEMA3E | 1.26583935097358 | 0.00115483999252319 |
| LUAD | PLXNB2 | ARHGEF12 | -1.29693734156383 | 0.00121089428940613 |
| THCA | PLXNB2 | SEMA3E | 1.72226565186768 | 0.00146528750243568 |
| COAD | PLXNB2 | RRAS | -1.30958080984356 | 0.00160405039787293 |
| STAD | PLXNB2 | SEMA3E | -1.55829472292672 | 0.00275033386424184 |
| COAD | PLXNB2 | SEMA4F | -1.00124180744174 | 0.00322914123535157 |
| KICH | PLXNB2 | RND3 | 2.60438944099854 | 0.00378090143203735 |
| COAD | PLXNB2 | SEMA3F | -2.44917846077769 | 0.00390031933784485 |
| CHOL | PLXNB2 | SEMA4F | -4.45345226581299 | 0.00390625 |
| CHOL | PLXNB2 | RND3 | -3.50360238513578 | 0.00390625 |
| CHOL | PLXNB2 | SEMA4D | -1.65355850561595 | 0.0078125 |
| CHOL | PLXNB2 | ARHGEF12 | -3.54986118090384 | 0.0078125 |
| BRCA | PLXNB2 | SEMA4F | -1.2313924469295 | 0.00820001368943606 |
| ESCA | PLXNB2 | SEMA4F | -4.4630640107767 | 0.013671875 |
| ESCA | PLXNB2 | MET | 1.7974042761042 | 0.0185546875 |
| KIRP | PLXNB2 | ARHGEF11 | -2.93532839044973 | 0.0194480954669416 |
| CHOL | PLXNB2 | RND1 | -1.12834179347783 | 0.01953125 |
| COAD | PLXNB2 | RND3 | -1.03108570831106 | 0.0381683111190796 |
| CHOL | PLXNB2 | SEMA3F | -1.27913303181879 | 0.0390625 |
| LIHC | PLXNB2 | SEMA4F | -1.46434046993899 | 1.09871251804152e-08 |
| KIRC | PLXNB2 | SEMA4D | -1.33732417750527 | 1.29783194913552e-06 |
| THCA | PLXNB2 | RRAS | 2.55390821223837 | 1.34811402718136e-08 |
| KIRC | PLXNB2 | SEMA3F | 2.05843236258847 | 1.44148329893084e-11 |
| THCA | PLXNB2 | MET | 2.09020268709397 | 1.50904867455457e-10 |
| KIRC | PLXNB2 | SEMA3E | 2.08793305515575 | 1.55238188425888e-10 |
| HNSC | PLXNB2 | SEMA3E | 4.22690714032052 | 1.99774895008887e-05 |
| KICH | PLXNB2 | SEMA3F | 1.63660477609347 | 2.5629997253418e-06 |
| LUSC | PLXNB2 | SEMA3F | 2.63153116267794 | 3.32807340670689e-07 |
| LIHC | PLXNB2 | SEMA3E | 3.8823538866985 | 3.59406613648813e-06 |
| LUAD | PLXNB2 | RRAS | -4.22934415046406 | 3.59910232594763e-11 |
| LUSC | PLXNB2 | ARHGEF12 | -4.31287793286558 | 3.85129646231505e-08 |
| LIHC | PLXNB2 | ARHGEF12 | -1.41507255727965 | 4.08456474127691e-05 |
| KIRP | PLXNB2 | ARHGEF12 | -1.02134884587413 | 4.20957803726197e-07 |
| PRAD | PLXNB2 | MET | 1.64643528857984 | 4.53264387257039e-06 |
| KIRP | PLXNB2 | MET | 1.52040209913428 | 4.6566128730774e-10 |
| LIHC | PLXNB2 | RND3 | -4.68514746510352 | 4.91907449309094e-09 |
| BRCA | PLXNB2 | SEMA3F | 1.85124094372612 | 5.1639316957333e-15 |
| LIHC | PLXNB2 | ARHGEF11 | -3.84984442030122 | 5.1965939338348e-08 |
| LUAD | PLXNB2 | SEMA3E | -1.09827969005927 | 6.23590787285683e-08 |
| LIHC | PLXNB2 | SEMA3F | -1.80378385104422 | 7.79049220721842e-10 |
| KICH | PLXNB2 | MET | 1.18206250071648 | 8.34465026855468e-07 |
| PRAD | PLXNB2 | RRAS | -2.03094624890416 | 8.40517570249428e-09 |
| LUSC | PLXNB2 | SEMA4F | 2.02755015850579 | 9.88885026766033e-06 |
Protein-protein interactors with this translation factor (BIOGRID-3.4.160) |
| PPI interactors with PLXNB2 |
| ARHGEF11, RND1, PTN, ARHGEF12, PLCG1, HMOX2, CENPU, PFDN1, C12orf57, TACC1, NIF3L1, FBXO6, CCDC8, RHOD, PVRIG, HLA-E, LMAN2, BTNL8, PTCH1, PTPRK, SIAE, LYPD6, NTRK1, TMX1, DEFA1, DEFA5, ST8SIA4, IL17RC, TMED6, SCGB1D1, ADAM21, TLR1, IL27RA, MPPE1, TMPRSS3, TRIM25, PTPRO, RNF4, GRB2, KIAA1429, VDAC2, VDAC3, APEX1, LMBR1L, FAM105A, PLEKHA4, E, M, nsp4, nsp6, ORF7a, ORF7b, ORF8, ST7, RET, FKBP8, SEC61B, E5a, E5b, DNAJC1, DNAJC25, ARF6, ATP2A1, CYP2C9, DERL1, DHFRL1, ELOVL5, EMD, HSD17B11, HSD3B7, KRAS, LAMP2, LAMP3, KIAA1715, LRRC59, LYN, MARCKS, METTL7A, RAB2A, RAB35, RAB5C, RAB9A, RPN1, RPN2, SEC62, SSR1, SMAD4, EDDM3B, LGALS1, PATE1, LY86, RNF149, SLC22A3, FBXO2, ZDHHC12, SEMA4C, SCGB2A1, KLRC1, CDHR3, C2CD4B, CRYZL1, C7orf34, CLEC12B, BTNL3, C1orf54, RLN1, CYHR1, APOA2, CD160, SERGEF, DEFB135, SPCS1, PIGH, TRGV3, BRICD5, ASIC4, IGLL5, SDF2L1, CST11, CLEC2B, IL5RA, DNASE1L1, SLURP1, TMEM106A, CNTNAP3, GGH, HLA-G, TSHR, ECEL1, SFTPC, CBLN4, BTNL2, DPP4, TMPRSS11B, TMPRSS4, TMPRSS2, TMEM106B, |
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Clinically associated variants from ClinVar. |
| Gene | Chr | Position | RefSeq | VarSeq | RefSeeq | VarType | Pathogenic | Disease | VarInfo |
| PLXNB2 | chr22 | 50719833 | G | A | single_nucleotide_variant | Likely_benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
| PLXNB2 | chr22 | 50719860 | C | T | single_nucleotide_variant | Benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
| PLXNB2 | chr22 | 50720295 | G | A | single_nucleotide_variant | Benign | not_provided | SO:0001819|synonymous_variant,SO:0001627|intron_variant | SO:0001819|synonymous_variant,SO:0001627|intron_variant |
| PLXNB2 | chr22 | 50721296 | G | A | single_nucleotide_variant | Benign | not_provided | SO:0001583|missense_variant | SO:0001583|missense_variant |
| PLXNB2 | chr22 | 50722277 | C | T | single_nucleotide_variant | Benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
| PLXNB2 | chr22 | 50725640 | C | T | single_nucleotide_variant | Likely_benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
| PLXNB2 | chr22 | 50727512 | G | A | single_nucleotide_variant | Benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
| PLXNB2 | chr22 | 50728168 | G | A | single_nucleotide_variant | Benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
nsSNVs with sample frequency (size of circle) from TCGA 33 cancers. |
SNVs and Indels |
| Gene | Cancer type | Chromosome | Start | End | RefSeeq | MutSeq | Mutation type | AAchange | # samples |
Copy number variation (CNV) of PLXNB2 * Click on the image to open the original image in a new window. |
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Fusion gene breakpoints (product of the structural variants (SVs)) across PLXNB2 * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion genes with this translation factor from FusionGDB2.0. |
| FusionGDB2 ID | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 95424 | ESCA | TCGA-IG-A97H | CPSF6 | chr12 | 69656342 | + | PLXNB2 | chr22 | 50727571 | - |
| 95424 | N/A | BF087400 | KRT7 | chr12 | 52638511 | + | PLXNB2 | chr22 | 50713901 | - |
| 98934 | N/A | EC558010 | PLXNB2 | chr22 | 50734803 | - | DARS | chr2 | 136664836 | + |
| 102928 | READ | TCGA-F5-6814 | PLXNB2 | chr22 | 50733148 | - | DENND6B | chr22 | 50757432 | - |
| 100995 | BRCA | TCGA-AN-A0FV-01A | PLXNB2 | chr22 | 50733148 | - | DLG2 | chr11 | 83691685 | - |
| 89789 | KIRP | TCGA-P4-A5EB | PLXNB2 | chr22 | 50722030 | - | MAST4 | chr5 | 66195778 | + |
| 89789 | KIRP | TCGA-P4-A5EB-01A | PLXNB2 | chr22 | 50722031 | - | MAST4 | chr5 | 66195779 | + |
| 92253 | N/A | AA984189 | PLXNB2 | chr22 | 50723783 | - | MERTK | chr2 | 112783070 | - |
| 81726 | KIRC | TCGA-CZ-5460-01A | PLXNB2 | chr22 | 50724229 | - | NDUFA4L2 | chr12 | 57631118 | - |
| 70674 | N/A | AV688404 | PLXNB2 | chr22 | 50713413 | - | NKAIN1 | chr1 | 31685909 | - |
| 86557 | PRAD | TCGA-J9-A52B-01A | PLXNB2 | chr22 | 50713408 | - | P4HTM | chr3 | 49038871 | + |
| 66578 | N/A | AA532612 | PLXNB2 | chr22 | 50713408 | - | PAK6 | chr15 | 40536625 | - |
| 95424 | N/A | BI033029 | PLXNB2 | chr22 | 50730363 | + | PLXNB2 | chr22 | 50730429 | - |
| 81444 | STAD | TCGA-BR-7722-01A | PLXNB2 | chr22 | 50724229 | - | PRMT1 | chr19 | 50191419 | + |
| 101174 | N/A | BM979599 | PLXNB2 | chr22 | 50713472 | + | RBM25 | chr14 | 73586932 | - |
| 80746 | STAD | TCGA-BR-A4PE-01A | PLXNB2 | chr22 | 50745982 | - | RPL23 | chr17 | 37008985 | - |
| 66578 | LGG | TCGA-TM-A84J | PLXNB2 | chr22 | 50721479 | - | SMPD4P1 | chr22 | 20968022 | - |
| 66578 | LGG | TCGA-TM-A84J-01A | PLXNB2 | chr22 | 50721766 | - | SMPD4P1 | chr22 | 20968022 | - |
| 98981 | CESC | TCGA-VS-A9V0-01A | PLXNB2 | chr22 | 50718434 | - | ST3GAL1 | chr8 | 134511432 | - |
| 98320 | LUAD | TCGA-55-7913-01B | PLXNB2 | chr22 | 50713408 | - | SUPT16H | chr14 | 21829491 | - |
| 66578 | UCEC | TCGA-AJ-A3EM | PLXNB2 | chr22 | 50733147 | - | TMPRSS6 | chr22 | 37499458 | - |
| 66578 | UCEC | TCGA-AJ-A3EM-01A | PLXNB2 | chr22 | 50733148 | - | TMPRSS6 | chr22 | 37499458 | - |
| 66578 | UCEC | TCGA-AJ-A3EM-01A | PLXNB2 | chr22 | 50745982 | - | TMPRSS6 | chr22 | 37499458 | - |
| 102670 | N/A | AI492115 | PLXNB2 | chr22 | 50713479 | + | TRIM25 | chr17 | 54990919 | + |
| 99580 | LUAD | TCGA-75-7031-01A | PLXNB2 | chr22 | 50713408 | - | UTRN | chr6 | 144665237 | + |
| 95424 | STAD | TCGA-BR-A4PD-01A | RNF213 | chr17 | 78354727 | + | PLXNB2 | chr22 | 50721195 | - |
| 95424 | BRCA | TCGA-AR-A1AQ-01A | SBF1 | chr22 | 50899952 | - | PLXNB2 | chr22 | 50723094 | - |
| 95424 | BRCA | TCGA-E2-A1L7-01A | SHANK3 | chr22 | 51160865 | + | PLXNB2 | chr22 | 50733207 | - |
| 95424 | BRCA | TCGA-E2-A1L7-01A | SHANK3 | chr22 | 51160865 | - | PLXNB2 | chr22 | 50729026 | - |
| 95424 | N/A | AI964040 | TACC1 | chr8 | 38710310 | - | PLXNB2 | chr22 | 50728748 | + |
| 95424 | HNSC | TCGA-BA-A4IF | TAF9 | chr5 | 68665483 | - | PLXNB2 | chr22 | 50717440 | - |
| 95425 | OV | TCGA-13-1403 | TUBGCP6 | chr22 | 50678632 | - | PLXNB2 | chr22 | 50723094 | - |
| 95425 | OV | TCGA-13-1403-01A | TUBGCP6 | chr22 | 50678633 | - | PLXNB2 | chr22 | 50723094 | - |
| 95425 | UCEC | TCGA-EO-A22X-01A | TUBGCP6 | chr22 | 50682148 | - | PLXNB2 | chr22 | 50723094 | - |
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Kaplan-Meier plots with logrank tests of overall survival (OS) |
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| Cancer type | Translation factor | Coefficent | Hazard ratio | Wald test pval | Likelihool ratio pval | Logrank test pval | # samples |
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Differential gene expression between female and male. (Wilcoxon test, pval<0.05) |
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| Cancer type | Translation factor | pval | adj.p |
| TGCT | PLXNB2 | 0.00126095983361846 | 0.035 |
| LUAD | PLXNB2 | 0.0137689697084492 | 0.37 |
| BRCA | PLXNB2 | 0.0174544843332866 | 0.45 |
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Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05) |
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| Cancer type | Translation factor | pval | adj.p |
| LIHC | PLXNB2 | 0.0396898148940791 | 1 |
| LUSC | PLXNB2 | 0.000635047486340152 | 0.021 |
| GBM | PLXNB2 | 0.00791824248517245 | 0.23 |
| LGG | PLXNB2 | 0.00233591044930948 | 0.072 |
| LAML | PLXNB2 | 0.00836055687301263 | 0.23 |
| ESCA | PLXNB2 | 0.023773401559122 | 0.64 |
| THYM | PLXNB2 | 0.00155152420133988 | 0.05 |
| SARC | PLXNB2 | 0.00341184287880242 | 0.1 |
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Drugs targeting genes involved in this translation factor. (DrugBank Version 5.1.8 2021-05-08) |
| UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Diseases associated with this translation factor. (DisGeNet 4.0) |
| Disease ID | Disease Name | # PubMeds | Disease source |