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Translation Factor: MRPL42 (NCBI Gene ID:28977) |
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Gene Summary |
Gene Information | Gene Name: MRPL42 | Gene ID: 28977 | Gene Symbol | MRPL42 | Gene ID | 28977 |
Gene Name | mitochondrial ribosomal protein L42 | |
Synonyms | HSPC204|L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT | |
Cytomap | 12q22 | |
Type of Gene | protein-coding | |
Description | 39S ribosomal protein L42, mitochondrial28S ribosomal protein S32, mitochondrial39S ribosomal protein L31, mitochondrialmitochondrial large ribosomal subunit protein mL42 | |
Modification date | 20200313 | |
UniProtAcc | Q9Y6G3 |
Child GO biological process term(s) under GO:0006412 |
GO ID | GO term |
GO:0005840 | Ribosome |
GO:0006412 | Translation |
Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Inferred gene age of translation factor. |
Gene | Inferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25 |
MRPL42 | (733 - 1119.25] |
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We searched PubMed using 'MRPL42[title] AND translation [title] AND human.' |
Gene | Title | PMID |
MRPL42 | . | . |
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Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. For more annotations, please visit our ExonSkipDB. |
Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ENST | Exon skip start (DNA) | Exon Skip end (DNA) | ORF |
ENST00000552217 | 93862964 | 93863131 | 5CDS-5UTR |
ENST00000549982 | 93870729 | 93870793 | Frame-shift |
ENST00000552217 | 93870729 | 93870793 | Frame-shift |
ENST00000549982 | 93873163 | 93873248 | Frame-shift |
ENST00000552217 | 93873163 | 93873248 | Frame-shift |
Exon skipping position in the amino acid sequence. |
ENST | Exon skip start (DNA) | Exon Skip end (DNA) | Len(transcript seq) | Exon skip start (mRNA) | Exon Skip end (mRNA) | Len(amino acid seq) | Exon skip start (AA) | Exon Skip end (AA) |
Potentially (partially) lost protein functional features of UniProt. |
UniProtAcc | Exon skip start (AA) | Exon Skip end (AA) | Function feature start (AA) | Function feature end (AA) | Functional feature type | Functional feature desc. |
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Gene expression level across TCGA pancancer |
Gene expression level across GTEx pantissue |
Expression level of gene isoforms across TCGA pancancer |
Expression level of gene isoforms across GTEx pantissue |
Cancer(tissue) type-specific expression level of Translation factor using z-score distriution |
Differential expression between tumor and matched normal (in the cancer types with more than 10 matched samples) |
Cancer type | Translation factor | FC | adj.pval |
LUAD | MRPL42 | -6.34610249602491 | 2.48255276366547e-08 |
KIRC | MRPL42 | -4.382095336248 | 5.26630854166927e-06 |
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Translation factor expression regulation through miRNA binding |
Cancer type | Gene | miRNA | TargetScan binding score (Context++ score percentile) | Coefficient | Pvalue |
Translation factor expression regulation through methylation in the promoter of Translation factor |
Cancer type | Gene | methyl group b | methyl group a | DEG pval | avg methyl in b | avg methyl in a | avg exp in b | avg exp in a |
Translation factor expression regulation through methylation in the gene body of Translation factor (positive regulation) |
Cancer type | Gene | methyl group b | methyl group a | DEG pval | avg methyl in b | avg methyl in a | avg exp in b | avg exp in a |
Translation factor expression regulation through copy number variation of Translation factor |
Cancer type | Gene | Coefficient | Pvalue |
SARC | MRPL42 | 0.274705482 | 0.042418528 |
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Strongly correlated genes belong to cellular important gene groups with MRPL42 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green) |
Cancer type | Gene group | Translation factor | Correlated gene | Coefficient | Pvalue |
COAD | Epifactor | MRPL42 | UBE2N | 0.824142343 | 9.88E-83 |
LUSC | Epifactor | MRPL42 | UBE2N | 0.801248723 | 5.27E-125 |
OV | Epifactor | MRPL42 | UBE2N | 0.836975221 | 4.15E-82 |
READ | Epifactor | MRPL42 | UBE2N | 0.834695867 | 1.93E-28 |
SKCM | Epifactor | MRPL42 | ACTR6 | 0.819885857 | 2.14E-116 |
TGCT | Epifactor | MRPL42 | HELLS | 0.810988894 | 1.11E-37 |
UVM | Cell metabolism gene | MRPL42 | XRN2 | 0.801036615 | 4.63E-19 |
UVM | Cell metabolism gene | MRPL42 | FAR1 | 0.801235102 | 4.47E-19 |
UVM | Cell metabolism gene | MRPL42 | AGPS | 0.801676682 | 4.14E-19 |
UVM | Cell metabolism gene | MRPL42 | NAMPT | 0.801718612 | 4.10E-19 |
UVM | Cell metabolism gene | MRPL42 | ETNK1 | 0.802295411 | 3.71E-19 |
UVM | Cell metabolism gene | MRPL42 | GNPDA2 | 0.803065345 | 3.23E-19 |
UVM | Cell metabolism gene | MRPL42 | PIGB | 0.804422621 | 2.54E-19 |
UVM | Cell metabolism gene | MRPL42 | C1GALT1C1 | 0.805993319 | 1.91E-19 |
UVM | Cell metabolism gene | MRPL42 | SGPP1 | 0.806042106 | 1.90E-19 |
UVM | Cell metabolism gene | MRPL42 | DLD | 0.806323373 | 1.80E-19 |
UVM | Cell metabolism gene | MRPL42 | SRP19 | 0.806856644 | 1.64E-19 |
UVM | Cell metabolism gene | MRPL42 | VAPA | 0.807209826 | 1.54E-19 |
UVM | Cell metabolism gene | MRPL42 | FUT8 | 0.808087404 | 1.31E-19 |
UVM | Cell metabolism gene | MRPL42 | PLA2G12A | 0.808361692 | 1.24E-19 |
UVM | Cell metabolism gene | MRPL42 | IDI1 | 0.809622005 | 9.87E-20 |
UVM | Cell metabolism gene | MRPL42 | MDH1 | 0.809784212 | 9.58E-20 |
UVM | Cell metabolism gene | MRPL42 | POLR2K | 0.81140714 | 7.09E-20 |
UVM | Cell metabolism gene | MRPL42 | SACM1L | 0.811428204 | 7.06E-20 |
UVM | Cell metabolism gene | MRPL42 | PIGA | 0.813929177 | 4.41E-20 |
UVM | Cell metabolism gene | MRPL42 | NUDT12 | 0.814233344 | 4.17E-20 |
UVM | Cell metabolism gene | MRPL42 | PAFAH1B1 | 0.814234351 | 4.17E-20 |
UVM | Cell metabolism gene | MRPL42 | DIS3 | 0.816235355 | 2.84E-20 |
UVM | Cell metabolism gene | MRPL42 | PIK3C3 | 0.816655714 | 2.62E-20 |
UVM | Cell metabolism gene | MRPL42 | ACSL4 | 0.816802601 | 2.55E-20 |
UVM | Cell metabolism gene | MRPL42 | MED7 | 0.817203186 | 2.36E-20 |
UVM | Cell metabolism gene | MRPL42 | GFPT1 | 0.81907103 | 1.64E-20 |
UVM | Cell metabolism gene | MRPL42 | NANP | 0.81931149 | 1.57E-20 |
UVM | Cell metabolism gene | MRPL42 | PSMD12 | 0.819402621 | 1.54E-20 |
UVM | Cell metabolism gene | MRPL42 | DLAT | 0.819963318 | 1.38E-20 |
UVM | Cell metabolism gene | MRPL42 | SEH1L | 0.821357818 | 1.05E-20 |
UVM | Cell metabolism gene | MRPL42 | SRP54 | 0.822609166 | 8.17E-21 |
UVM | Cell metabolism gene | MRPL42 | GRPEL2 | 0.825678231 | 4.40E-21 |
UVM | Cell metabolism gene | MRPL42 | CMAS | 0.826836121 | 3.47E-21 |
UVM | Cell metabolism gene | MRPL42 | MGAT2 | 0.827734662 | 2.89E-21 |
UVM | Cell metabolism gene | MRPL42 | DCK | 0.830069052 | 1.78E-21 |
UVM | Cell metabolism gene | MRPL42 | PITPNB | 0.830963044 | 1.47E-21 |
UVM | Cell metabolism gene | MRPL42 | MED17 | 0.831745333 | 1.25E-21 |
UVM | Cell metabolism gene | MRPL42 | UGGT2 | 0.831961818 | 1.19E-21 |
UVM | Cell metabolism gene | MRPL42 | VBP1 | 0.833416121 | 8.75E-22 |
UVM | Cell metabolism gene | MRPL42 | TIMM17A | 0.835278042 | 5.86E-22 |
UVM | Cell metabolism gene | MRPL42 | SRP72 | 0.83549048 | 5.60E-22 |
UVM | Cell metabolism gene | MRPL42 | TRAM1 | 0.839204558 | 2.48E-22 |
UVM | Cell metabolism gene | MRPL42 | CCT2 | 0.840029446 | 2.06E-22 |
UVM | Cell metabolism gene | MRPL42 | MCEE | 0.840283887 | 1.95E-22 |
UVM | Cell metabolism gene | MRPL42 | SPTLC1 | 0.840704167 | 1.77E-22 |
UVM | Cell metabolism gene | MRPL42 | HMGCR | 0.841235157 | 1.57E-22 |
UVM | Cell metabolism gene | MRPL42 | PRKAA1 | 0.842343564 | 1.22E-22 |
UVM | Cell metabolism gene | MRPL42 | RAP1B | 0.842586947 | 1.16E-22 |
UVM | Cell metabolism gene | MRPL42 | EDEM3 | 0.842903463 | 1.08E-22 |
UVM | Cell metabolism gene | MRPL42 | RPE | 0.844482643 | 7.49E-23 |
UVM | Cell metabolism gene | MRPL42 | PI4K2B | 0.845215531 | 6.32E-23 |
UVM | Cell metabolism gene | MRPL42 | CLOCK | 0.846072328 | 5.18E-23 |
UVM | Cell metabolism gene | MRPL42 | CNOT8 | 0.847749184 | 3.49E-23 |
UVM | Cell metabolism gene | MRPL42 | LCLAT1 | 0.848491649 | 2.93E-23 |
UVM | Cell metabolism gene | MRPL42 | MTMR6 | 0.849459527 | 2.33E-23 |
UVM | Cell metabolism gene | MRPL42 | IMPA1 | 0.850447243 | 1.83E-23 |
UVM | Cell metabolism gene | MRPL42 | AZIN1 | 0.851316097 | 1.49E-23 |
UVM | Cell metabolism gene | MRPL42 | EPT1 | 0.852004659 | 1.26E-23 |
UVM | Cell metabolism gene | MRPL42 | PHAX | 0.852455738 | 1.13E-23 |
UVM | Cell metabolism gene | MRPL42 | POLR2B | 0.852508536 | 1.11E-23 |
UVM | Cell metabolism gene | MRPL42 | GPD2 | 0.853604108 | 8.50E-24 |
UVM | Cell metabolism gene | MRPL42 | PSMC6 | 0.853819379 | 8.06E-24 |
UVM | Cell metabolism gene | MRPL42 | BPNT1 | 0.854173964 | 7.39E-24 |
UVM | Cell metabolism gene | MRPL42 | SLC25A32 | 0.857402472 | 3.29E-24 |
UVM | Cell metabolism gene | MRPL42 | ARFGEF2 | 0.864555608 | 5.09E-25 |
UVM | Cell metabolism gene | MRPL42 | PSME4 | 0.865997707 | 3.45E-25 |
UVM | Cell metabolism gene | MRPL42 | PIK3C2A | 0.866647629 | 2.89E-25 |
UVM | Cell metabolism gene | MRPL42 | PANK3 | 0.87107848 | 8.45E-26 |
UVM | Cell metabolism gene | MRPL42 | PSMA4 | 0.874479802 | 3.19E-26 |
UVM | Cell metabolism gene | MRPL42 | PPAT | 0.880807431 | 4.80E-27 |
UVM | Cell metabolism gene | MRPL42 | PSMD14 | 0.884104086 | 1.71E-27 |
UVM | Cell metabolism gene | MRPL42 | NUP50 | 0.884223859 | 1.65E-27 |
UVM | Cell metabolism gene | MRPL42 | XPO1 | 0.886650206 | 7.58E-28 |
UVM | Cell metabolism gene | MRPL42 | TGS1 | 0.889124009 | 3.36E-28 |
UVM | Cell metabolism gene | MRPL42 | TNPO1 | 0.891453909 | 1.54E-28 |
UVM | Cell metabolism gene | MRPL42 | LYPLA1 | 0.892240077 | 1.18E-28 |
UVM | CGC | MRPL42 | ITGAV | 0.800368592 | 5.20E-19 |
UVM | CGC | MRPL42 | STAG2 | 0.801492593 | 4.27E-19 |
UVM | CGC | MRPL42 | POT1 | 0.801503865 | 4.26E-19 |
UVM | CGC | MRPL42 | ETNK1 | 0.802295411 | 3.71E-19 |
UVM | CGC | MRPL42 | AFF4 | 0.80233152 | 3.68E-19 |
UVM | CGC | MRPL42 | MSH2 | 0.803195591 | 3.16E-19 |
UVM | CGC | MRPL42 | ARID2 | 0.804188098 | 2.65E-19 |
UVM | CGC | MRPL42 | TCF12 | 0.810057693 | 9.11E-20 |
UVM | CGC | MRPL42 | PWWP2A | 0.817035451 | 2.44E-20 |
UVM | CGC | MRPL42 | EZH2 | 0.817698925 | 2.14E-20 |
UVM | CGC | MRPL42 | UBR5 | 0.825824475 | 4.27E-21 |
UVM | CGC | MRPL42 | ABI1 | 0.829694371 | 1.92E-21 |
UVM | CGC | MRPL42 | RAD17 | 0.830587126 | 1.59E-21 |
UVM | CGC | MRPL42 | SF3B1 | 0.833653759 | 8.32E-22 |
UVM | CGC | MRPL42 | TOP1 | 0.833711865 | 8.22E-22 |
UVM | CGC | MRPL42 | TCEA1 | 0.835240363 | 5.91E-22 |
UVM | CGC | MRPL42 | ZMYM2 | 0.835900488 | 5.12E-22 |
UVM | CGC | MRPL42 | KRAS | 0.836795122 | 4.21E-22 |
UVM | CGC | MRPL42 | USP8 | 0.837270552 | 3.80E-22 |
UVM | CGC | MRPL42 | PMS1 | 0.837505197 | 3.60E-22 |
UVM | CGC | MRPL42 | GOLGA5 | 0.838344293 | 3.00E-22 |
UVM | CGC | MRPL42 | CUL3 | 0.839139106 | 2.51E-22 |
UVM | CGC | MRPL42 | JAK2 | 0.843763798 | 8.83E-23 |
UVM | CGC | MRPL42 | FBXO11 | 0.84470808 | 7.11E-23 |
UVM | CGC | MRPL42 | BAZ1A | 0.849644626 | 2.22E-23 |
UVM | CGC | MRPL42 | CREB1 | 0.850859618 | 1.66E-23 |
UVM | CGC | MRPL42 | SUZ12 | 0.850936891 | 1.63E-23 |
UVM | CGC | MRPL42 | ATM | 0.850967712 | 1.62E-23 |
UVM | CGC | MRPL42 | KIF5B | 0.85919082 | 2.08E-24 |
UVM | CGC | MRPL42 | CDC73 | 0.860856668 | 1.35E-24 |
UVM | CGC | MRPL42 | BMPR1A | 0.86319147 | 7.33E-25 |
UVM | CGC | MRPL42 | RAD21 | 0.866347197 | 3.14E-25 |
UVM | CGC | MRPL42 | NBN | 0.878678175 | 9.18E-27 |
UVM | CGC | MRPL42 | RABEP1 | 0.880234066 | 5.72E-27 |
UVM | CGC | MRPL42 | XPO1 | 0.886650206 | 7.58E-28 |
UVM | Epifactor | MRPL42 | PCGF6 | 0.800756536 | 4.86E-19 |
UVM | Epifactor | MRPL42 | ATF2 | 0.801015599 | 4.65E-19 |
UVM | Epifactor | MRPL42 | ZRANB3 | 0.801812437 | 4.04E-19 |
UVM | Epifactor | MRPL42 | SUDS3 | 0.802008566 | 3.90E-19 |
UVM | Epifactor | MRPL42 | BRWD3 | 0.803162941 | 3.18E-19 |
UVM | Epifactor | MRPL42 | ARID2 | 0.804188098 | 2.65E-19 |
UVM | Epifactor | MRPL42 | DNTTIP2 | 0.804996384 | 2.29E-19 |
UVM | Epifactor | MRPL42 | SMARCAD1 | 0.807522484 | 1.45E-19 |
UVM | Epifactor | MRPL42 | PARG | 0.809428453 | 1.02E-19 |
UVM | Epifactor | MRPL42 | INO80D | 0.809895351 | 9.39E-20 |
UVM | Epifactor | MRPL42 | CUL5 | 0.810878082 | 7.82E-20 |
UVM | Epifactor | MRPL42 | YEATS4 | 0.811458238 | 7.02E-20 |
UVM | Epifactor | MRPL42 | RAD54B | 0.81621046 | 2.86E-20 |
UVM | Epifactor | MRPL42 | EZH2 | 0.817698925 | 2.14E-20 |
UVM | Epifactor | MRPL42 | JMJD1C | 0.819115486 | 1.63E-20 |
UVM | Epifactor | MRPL42 | YY1 | 0.819557702 | 1.49E-20 |
UVM | Epifactor | MRPL42 | NSL1 | 0.820903968 | 1.15E-20 |
UVM | Epifactor | MRPL42 | BRMS1L | 0.821249436 | 1.07E-20 |
UVM | Epifactor | MRPL42 | HMGB1 | 0.821389947 | 1.04E-20 |
UVM | Epifactor | MRPL42 | ANP32E | 0.824198598 | 5.94E-21 |
UVM | Epifactor | MRPL42 | EPC2 | 0.825809973 | 4.28E-21 |
UVM | Epifactor | MRPL42 | UBR5 | 0.825824475 | 4.27E-21 |
UVM | Epifactor | MRPL42 | BRCC3 | 0.826352352 | 3.83E-21 |
UVM | Epifactor | MRPL42 | TLK1 | 0.826467121 | 3.75E-21 |
UVM | Epifactor | MRPL42 | ATAD2B | 0.828982691 | 2.23E-21 |
UVM | Epifactor | MRPL42 | SF3B1 | 0.833653759 | 8.32E-22 |
UVM | Epifactor | MRPL42 | SMEK1 | 0.834640596 | 6.73E-22 |
UVM | Epifactor | MRPL42 | ZMYM2 | 0.835900488 | 5.12E-22 |
UVM | Epifactor | MRPL42 | USP15 | 0.83754157 | 3.58E-22 |
UVM | Epifactor | MRPL42 | FAM175B | 0.837830358 | 3.36E-22 |
UVM | Epifactor | MRPL42 | CUL3 | 0.839139106 | 2.51E-22 |
UVM | Epifactor | MRPL42 | CHUK | 0.839647852 | 2.24E-22 |
UVM | Epifactor | MRPL42 | PRKAA1 | 0.842343564 | 1.22E-22 |
UVM | Epifactor | MRPL42 | JAK2 | 0.843763798 | 8.83E-23 |
UVM | Epifactor | MRPL42 | TAF7 | 0.843866841 | 8.63E-23 |
UVM | Epifactor | MRPL42 | TDG | 0.845532532 | 5.87E-23 |
UVM | Epifactor | MRPL42 | CLOCK | 0.846072328 | 5.18E-23 |
UVM | Epifactor | MRPL42 | MASTL | 0.846400442 | 4.79E-23 |
UVM | Epifactor | MRPL42 | BAZ1A | 0.849644626 | 2.22E-23 |
UVM | Epifactor | MRPL42 | CUL2 | 0.850772528 | 1.70E-23 |
UVM | Epifactor | MRPL42 | SUZ12 | 0.850936891 | 1.63E-23 |
UVM | Epifactor | MRPL42 | ATM | 0.850967712 | 1.62E-23 |
UVM | Epifactor | MRPL42 | SMARCA5 | 0.854294657 | 7.17E-24 |
UVM | Epifactor | MRPL42 | ACTR6 | 0.855182597 | 5.75E-24 |
UVM | Epifactor | MRPL42 | CBX3 | 0.855884051 | 4.82E-24 |
UVM | Epifactor | MRPL42 | RLIM | 0.85928851 | 2.03E-24 |
UVM | Epifactor | MRPL42 | CDC73 | 0.860856668 | 1.35E-24 |
UVM | Epifactor | MRPL42 | UCHL5 | 0.864214866 | 5.58E-25 |
UVM | Epifactor | MRPL42 | AEBP2 | 0.868990643 | 1.52E-25 |
UVM | Epifactor | MRPL42 | CDK17 | 0.871585596 | 7.32E-26 |
UVM | Epifactor | MRPL42 | TAF2 | 0.872963005 | 4.94E-26 |
UVM | Epifactor | MRPL42 | HAT1 | 0.874147044 | 3.51E-26 |
UVM | Epifactor | MRPL42 | PHF20L1 | 0.875847938 | 2.13E-26 |
UVM | Epifactor | MRPL42 | NBN | 0.878678175 | 9.18E-27 |
UVM | Epifactor | MRPL42 | SMEK2 | 0.891814044 | 1.36E-28 |
UVM | IUPHAR | MRPL42 | ITGAV | 0.800368592 | 5.20E-19 |
UVM | IUPHAR | MRPL42 | EGLN1 | 0.800832093 | 4.80E-19 |
UVM | IUPHAR | MRPL42 | NEK7 | 0.801517821 | 4.25E-19 |
UVM | IUPHAR | MRPL42 | DYRK2 | 0.801928823 | 3.96E-19 |
UVM | IUPHAR | MRPL42 | BRWD3 | 0.803162941 | 3.18E-19 |
UVM | IUPHAR | MRPL42 | SGPP1 | 0.806042106 | 1.90E-19 |
UVM | IUPHAR | MRPL42 | NIPAL2 | 0.806392264 | 1.78E-19 |
UVM | IUPHAR | MRPL42 | ATP6V0A2 | 0.806442264 | 1.77E-19 |
UVM | IUPHAR | MRPL42 | RPS6KC1 | 0.807972097 | 1.34E-19 |
UVM | IUPHAR | MRPL42 | TAOK3 | 0.808167916 | 1.29E-19 |
UVM | IUPHAR | MRPL42 | PLA2G12A | 0.808361692 | 1.24E-19 |
UVM | IUPHAR | MRPL42 | IDI1 | 0.809622005 | 9.87E-20 |
UVM | IUPHAR | MRPL42 | PLK4 | 0.811136446 | 7.46E-20 |
UVM | IUPHAR | MRPL42 | SLC30A9 | 0.813495084 | 4.79E-20 |
UVM | IUPHAR | MRPL42 | ATP11C | 0.814074751 | 4.29E-20 |
UVM | IUPHAR | MRPL42 | SLC25A46 | 0.814428651 | 4.02E-20 |
UVM | IUPHAR | MRPL42 | SLC30A6 | 0.815960122 | 3.00E-20 |
UVM | IUPHAR | MRPL42 | PIK3C3 | 0.816655714 | 2.62E-20 |
UVM | IUPHAR | MRPL42 | ATP2B1 | 0.817465241 | 2.24E-20 |
UVM | IUPHAR | MRPL42 | EZH2 | 0.817698925 | 2.14E-20 |
UVM | IUPHAR | MRPL42 | CYP51A1 | 0.817780604 | 2.11E-20 |
UVM | IUPHAR | MRPL42 | JMJD1C | 0.819115486 | 1.63E-20 |
UVM | IUPHAR | MRPL42 | TNKS2 | 0.820266893 | 1.30E-20 |
UVM | IUPHAR | MRPL42 | CSNK1G3 | 0.820808481 | 1.17E-20 |
UVM | IUPHAR | MRPL42 | TMEM165 | 0.822588666 | 8.20E-21 |
UVM | IUPHAR | MRPL42 | RIOK3 | 0.823009494 | 7.54E-21 |
UVM | IUPHAR | MRPL42 | STK17A | 0.823279764 | 7.14E-21 |
UVM | IUPHAR | MRPL42 | TLK1 | 0.826467121 | 3.75E-21 |
UVM | IUPHAR | MRPL42 | MAP3K2 | 0.827249401 | 3.19E-21 |
UVM | IUPHAR | MRPL42 | ATAD2B | 0.828982691 | 2.23E-21 |
UVM | IUPHAR | MRPL42 | BMPR2 | 0.82915217 | 2.15E-21 |
UVM | IUPHAR | MRPL42 | TOP1 | 0.833711865 | 8.22E-22 |
UVM | IUPHAR | MRPL42 | KRAS | 0.836795122 | 4.21E-22 |
UVM | IUPHAR | MRPL42 | CHUK | 0.839647852 | 2.24E-22 |
UVM | IUPHAR | MRPL42 | RIOK2 | 0.839963691 | 2.09E-22 |
UVM | IUPHAR | MRPL42 | SPTLC1 | 0.840704167 | 1.77E-22 |
UVM | IUPHAR | MRPL42 | MAGT1 | 0.840868661 | 1.71E-22 |
UVM | IUPHAR | MRPL42 | HMGCR | 0.841235157 | 1.57E-22 |
UVM | IUPHAR | MRPL42 | ADAM17 | 0.841958834 | 1.33E-22 |
UVM | IUPHAR | MRPL42 | PRKAA1 | 0.842343564 | 1.22E-22 |
UVM | IUPHAR | MRPL42 | NAPEPLD | 0.842634076 | 1.14E-22 |
UVM | IUPHAR | MRPL42 | JAK2 | 0.843763798 | 8.83E-23 |
UVM | IUPHAR | MRPL42 | FBXO11 | 0.84470808 | 7.11E-23 |
UVM | IUPHAR | MRPL42 | PI4K2B | 0.845215531 | 6.32E-23 |
UVM | IUPHAR | MRPL42 | CSNK1A1 | 0.845393873 | 6.06E-23 |
UVM | IUPHAR | MRPL42 | CLOCK | 0.846072328 | 5.18E-23 |
UVM | IUPHAR | MRPL42 | MASTL | 0.846400442 | 4.79E-23 |
UVM | IUPHAR | MRPL42 | SLC30A5 | 0.84652158 | 4.66E-23 |
UVM | IUPHAR | MRPL42 | XIAP | 0.846954937 | 4.21E-23 |
UVM | IUPHAR | MRPL42 | BAZ1A | 0.849644626 | 2.22E-23 |
UVM | IUPHAR | MRPL42 | IDE | 0.85004527 | 2.02E-23 |
UVM | IUPHAR | MRPL42 | IMPA1 | 0.850447243 | 1.83E-23 |
UVM | IUPHAR | MRPL42 | ATM | 0.850967712 | 1.62E-23 |
UVM | IUPHAR | MRPL42 | ABCB10 | 0.852900807 | 1.01E-23 |
UVM | IUPHAR | MRPL42 | SLC25A32 | 0.857402472 | 3.29E-24 |
UVM | IUPHAR | MRPL42 | BMPR1A | 0.86319147 | 7.33E-25 |
UVM | IUPHAR | MRPL42 | TBK1 | 0.864547696 | 5.10E-25 |
UVM | IUPHAR | MRPL42 | PIK3C2A | 0.866647629 | 2.89E-25 |
UVM | IUPHAR | MRPL42 | MAPK6 | 0.87008008 | 1.12E-25 |
UVM | IUPHAR | MRPL42 | CDK17 | 0.871585596 | 7.32E-26 |
UVM | IUPHAR | MRPL42 | ATP6V1C1 | 0.873939735 | 3.73E-26 |
UVM | IUPHAR | MRPL42 | HAT1 | 0.874147044 | 3.51E-26 |
UVM | IUPHAR | MRPL42 | STK3 | 0.878808639 | 8.83E-27 |
UVM | IUPHAR | MRPL42 | PPAT | 0.880807431 | 4.80E-27 |
UVM | IUPHAR | MRPL42 | VRK2 | 0.880973655 | 4.56E-27 |
UVM | IUPHAR | MRPL42 | PSMD14 | 0.884104086 | 1.71E-27 |
UVM | IUPHAR | MRPL42 | XPO1 | 0.886650206 | 7.58E-28 |
UVM | IUPHAR | MRPL42 | USP14 | 0.892124168 | 1.22E-28 |
UVM | IUPHAR | MRPL42 | PRMT3 | 0.893162828 | 8.56E-29 |
UVM | IUPHAR | MRPL42 | MAP4K3 | 0.893420827 | 7.83E-29 |
UVM | Kinase | MRPL42 | NEK7 | 0.801517821 | 4.25E-19 |
UVM | Kinase | MRPL42 | DYRK2 | 0.801928823 | 3.96E-19 |
UVM | Kinase | MRPL42 | RPS6KC1 | 0.807972097 | 1.34E-19 |
UVM | Kinase | MRPL42 | TAOK3 | 0.808167916 | 1.29E-19 |
UVM | Kinase | MRPL42 | PLK4 | 0.811136446 | 7.46E-20 |
UVM | Kinase | MRPL42 | CSNK1G3 | 0.820808481 | 1.17E-20 |
UVM | Kinase | MRPL42 | RIOK3 | 0.823009494 | 7.54E-21 |
UVM | Kinase | MRPL42 | STK17A | 0.823279764 | 7.14E-21 |
UVM | Kinase | MRPL42 | TLK1 | 0.826467121 | 3.75E-21 |
UVM | Kinase | MRPL42 | MAP3K2 | 0.827249401 | 3.19E-21 |
UVM | Kinase | MRPL42 | BMPR2 | 0.82915217 | 2.15E-21 |
UVM | Kinase | MRPL42 | CHUK | 0.839647852 | 2.24E-22 |
UVM | Kinase | MRPL42 | RIOK2 | 0.839963691 | 2.09E-22 |
UVM | Kinase | MRPL42 | PRKAA1 | 0.842343564 | 1.22E-22 |
UVM | Kinase | MRPL42 | JAK2 | 0.843763798 | 8.83E-23 |
UVM | Kinase | MRPL42 | CSNK1A1 | 0.845393873 | 6.06E-23 |
UVM | Kinase | MRPL42 | MASTL | 0.846400442 | 4.79E-23 |
UVM | Kinase | MRPL42 | BAZ1A | 0.849644626 | 2.22E-23 |
UVM | Kinase | MRPL42 | ATM | 0.850967712 | 1.62E-23 |
UVM | Kinase | MRPL42 | BMPR1A | 0.86319147 | 7.33E-25 |
UVM | Kinase | MRPL42 | TBK1 | 0.864547696 | 5.10E-25 |
UVM | Kinase | MRPL42 | MAPK6 | 0.87008008 | 1.12E-25 |
UVM | Kinase | MRPL42 | CDK17 | 0.871585596 | 7.32E-26 |
UVM | Kinase | MRPL42 | STK3 | 0.878808639 | 8.83E-27 |
UVM | Kinase | MRPL42 | VRK2 | 0.880973655 | 4.56E-27 |
UVM | Kinase | MRPL42 | MAP4K3 | 0.893420827 | 7.83E-29 |
UVM | TF | MRPL42 | PCGF6 | 0.800756536 | 4.86E-19 |
UVM | TF | MRPL42 | ZNF791 | 0.800810874 | 4.82E-19 |
UVM | TF | MRPL42 | ATF2 | 0.801015599 | 4.65E-19 |
UVM | TF | MRPL42 | ZNF33A | 0.80158826 | 4.20E-19 |
UVM | TF | MRPL42 | ZNF222 | 0.802309302 | 3.70E-19 |
UVM | TF | MRPL42 | ZNF75D | 0.802819751 | 3.38E-19 |
UVM | TF | MRPL42 | ZNF701 | 0.803657332 | 2.91E-19 |
UVM | TF | MRPL42 | ZNF441 | 0.803809676 | 2.83E-19 |
UVM | TF | MRPL42 | CREM | 0.803973638 | 2.75E-19 |
UVM | TF | MRPL42 | ARID2 | 0.804188098 | 2.65E-19 |
UVM | TF | MRPL42 | ZNF45 | 0.804249048 | 2.62E-19 |
UVM | TF | MRPL42 | ZNF225 | 0.806621522 | 1.71E-19 |
UVM | TF | MRPL42 | ZNF260 | 0.807574754 | 1.44E-19 |
UVM | TF | MRPL42 | ZNF397 | 0.809038956 | 1.10E-19 |
UVM | TF | MRPL42 | ZNF234 | 0.80919241 | 1.07E-19 |
UVM | TF | MRPL42 | TCF12 | 0.810057693 | 9.11E-20 |
UVM | TF | MRPL42 | ZNF680 | 0.810665238 | 8.14E-20 |
UVM | TF | MRPL42 | ELK3 | 0.810911138 | 7.78E-20 |
UVM | TF | MRPL42 | ZNF510 | 0.810988688 | 7.66E-20 |
UVM | TF | MRPL42 | ZNF527 | 0.811359359 | 7.15E-20 |
UVM | TF | MRPL42 | PRDM10 | 0.812291976 | 6.01E-20 |
UVM | TF | MRPL42 | ZNF430 | 0.81266648 | 5.60E-20 |
UVM | TF | MRPL42 | ZNF101 | 0.814774773 | 3.76E-20 |
UVM | TF | MRPL42 | ZNF226 | 0.815270257 | 3.42E-20 |
UVM | TF | MRPL42 | FOXN2 | 0.81579637 | 3.09E-20 |
UVM | TF | MRPL42 | ZNF383 | 0.816906922 | 2.50E-20 |
UVM | TF | MRPL42 | ZBTB10 | 0.817647215 | 2.17E-20 |
UVM | TF | MRPL42 | ADNP2 | 0.819290971 | 1.57E-20 |
UVM | TF | MRPL42 | YY1 | 0.819557702 | 1.49E-20 |
UVM | TF | MRPL42 | ZNF140 | 0.820871609 | 1.15E-20 |
UVM | TF | MRPL42 | ZNF800 | 0.821327592 | 1.05E-20 |
UVM | TF | MRPL42 | ZNF546 | 0.822844386 | 7.79E-21 |
UVM | TF | MRPL42 | CEBPG | 0.823359237 | 7.03E-21 |
UVM | TF | MRPL42 | ZNF484 | 0.82391301 | 6.29E-21 |
UVM | TF | MRPL42 | ZNF24 | 0.824752305 | 5.31E-21 |
UVM | TF | MRPL42 | ZNF572 | 0.824860885 | 5.19E-21 |
UVM | TF | MRPL42 | MEF2A | 0.826299953 | 3.88E-21 |
UVM | TF | MRPL42 | AHCTF1 | 0.827898665 | 2.79E-21 |
UVM | TF | MRPL42 | ZNF449 | 0.827905704 | 2.79E-21 |
UVM | TF | MRPL42 | ZNF182 | 0.830860373 | 1.51E-21 |
UVM | TF | MRPL42 | ZNF281 | 0.832206609 | 1.13E-21 |
UVM | TF | MRPL42 | ELF1 | 0.833151847 | 9.26E-22 |
UVM | TF | MRPL42 | GPBP1 | 0.833993936 | 7.73E-22 |
UVM | TF | MRPL42 | ZNF136 | 0.834493066 | 6.95E-22 |
UVM | TF | MRPL42 | ZNF468 | 0.834530649 | 6.89E-22 |
UVM | TF | MRPL42 | SMAD5 | 0.835781915 | 5.25E-22 |
UVM | TF | MRPL42 | ZNF181 | 0.837023217 | 4.01E-22 |
UVM | TF | MRPL42 | THAP5 | 0.837495867 | 3.61E-22 |
UVM | TF | MRPL42 | SP3 | 0.83857574 | 2.85E-22 |
UVM | TF | MRPL42 | ZNF780A | 0.840383043 | 1.90E-22 |
UVM | TF | MRPL42 | BACH1 | 0.841352405 | 1.53E-22 |
UVM | TF | MRPL42 | ZNF131 | 0.842478054 | 1.19E-22 |
UVM | TF | MRPL42 | IKZF5 | 0.842644146 | 1.14E-22 |
UVM | TF | MRPL42 | ZBTB1 | 0.844442422 | 7.56E-23 |
UVM | TF | MRPL42 | E2F5 | 0.845782241 | 5.54E-23 |
UVM | TF | MRPL42 | CLOCK | 0.846072328 | 5.18E-23 |
UVM | TF | MRPL42 | ZNF28 | 0.848288031 | 3.07E-23 |
UVM | TF | MRPL42 | ZNF146 | 0.849705789 | 2.19E-23 |
UVM | TF | MRPL42 | CREB1 | 0.850859618 | 1.66E-23 |
UVM | TF | MRPL42 | ZNF267 | 0.851075951 | 1.58E-23 |
UVM | TF | MRPL42 | ZNF675 | 0.855464749 | 5.36E-24 |
UVM | TF | MRPL42 | TOPORS | 0.856467119 | 4.17E-24 |
UVM | TF | MRPL42 | ZBTB6 | 0.856706143 | 3.92E-24 |
UVM | TF | MRPL42 | ZNF43 | 0.859972817 | 1.70E-24 |
UVM | TF | MRPL42 | ZNF451 | 0.86127919 | 1.21E-24 |
UVM | TF | MRPL42 | AEBP2 | 0.868990643 | 1.52E-25 |
UVM | TF | MRPL42 | TERF1 | 0.875953412 | 2.07E-26 |
UVM | TF | MRPL42 | CEBPZ | 0.878132562 | 1.08E-26 |
UVM | TF | MRPL42 | PRMT3 | 0.893162828 | 8.56E-29 |
UVM | TSG | MRPL42 | ITGAV | 0.800368592 | 5.20E-19 |
UVM | TSG | MRPL42 | EGLN1 | 0.800832093 | 4.80E-19 |
UVM | TSG | MRPL42 | CCAR1 | 0.80146898 | 4.29E-19 |
UVM | TSG | MRPL42 | MSH2 | 0.803195591 | 3.16E-19 |
UVM | TSG | MRPL42 | CREM | 0.803973638 | 2.75E-19 |
UVM | TSG | MRPL42 | ARID2 | 0.804188098 | 2.65E-19 |
UVM | TSG | MRPL42 | PTPN2 | 0.80519121 | 2.21E-19 |
UVM | TSG | MRPL42 | MLH3 | 0.806648376 | 1.70E-19 |
UVM | TSG | MRPL42 | VEZT | 0.806803322 | 1.65E-19 |
UVM | TSG | MRPL42 | KRIT1 | 0.808024409 | 1.32E-19 |
UVM | TSG | MRPL42 | RBBP8 | 0.809623099 | 9.87E-20 |
UVM | TSG | MRPL42 | CUL5 | 0.810878082 | 7.82E-20 |
UVM | TSG | MRPL42 | GORAB | 0.812484131 | 5.80E-20 |
UVM | TSG | MRPL42 | PAFAH1B1 | 0.814234351 | 4.17E-20 |
UVM | TSG | MRPL42 | EZH2 | 0.817698925 | 2.14E-20 |
UVM | TSG | MRPL42 | PPP2R5C | 0.819098265 | 1.63E-20 |
UVM | TSG | MRPL42 | RB1CC1 | 0.820049061 | 1.36E-20 |
UVM | TSG | MRPL42 | PTPN12 | 0.823960636 | 6.23E-21 |
UVM | TSG | MRPL42 | INTS6 | 0.82728909 | 3.16E-21 |
UVM | TSG | MRPL42 | ANXA7 | 0.828214431 | 2.61E-21 |
UVM | TSG | MRPL42 | BMPR2 | 0.82915217 | 2.15E-21 |
UVM | TSG | MRPL42 | GGNBP2 | 0.831491191 | 1.32E-21 |
UVM | TSG | MRPL42 | WDR11 | 0.831988494 | 1.19E-21 |
UVM | TSG | MRPL42 | CHUK | 0.839647852 | 2.24E-22 |
UVM | TSG | MRPL42 | PDS5B | 0.841210335 | 1.58E-22 |
UVM | TSG | MRPL42 | PRKAA1 | 0.842343564 | 1.22E-22 |
UVM | TSG | MRPL42 | NAPEPLD | 0.842634076 | 1.14E-22 |
UVM | TSG | MRPL42 | CSNK1A1 | 0.845393873 | 6.06E-23 |
UVM | TSG | MRPL42 | RINT1 | 0.849612078 | 2.24E-23 |
UVM | TSG | MRPL42 | CUL2 | 0.850772528 | 1.70E-23 |
UVM | TSG | MRPL42 | SUZ12 | 0.850936891 | 1.63E-23 |
UVM | TSG | MRPL42 | ATM | 0.850967712 | 1.62E-23 |
UVM | TSG | MRPL42 | LIN9 | 0.85281204 | 1.03E-23 |
UVM | TSG | MRPL42 | TOPORS | 0.856467119 | 4.17E-24 |
UVM | TSG | MRPL42 | GTPBP4 | 0.860708276 | 1.41E-24 |
UVM | TSG | MRPL42 | CDC73 | 0.860856668 | 1.35E-24 |
UVM | TSG | MRPL42 | BMPR1A | 0.86319147 | 7.33E-25 |
UVM | TSG | MRPL42 | SMCHD1 | 0.868663509 | 1.66E-25 |
UVM | TSG | MRPL42 | NBN | 0.878678175 | 9.18E-27 |
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Protein 3D structure Visit iCn3D. |
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Protein-protein interaction networks * Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P)) |
Overlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P)) |
* Edge colors based on TCGA cancer types. |
* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P)) |
Cancer type | Translation factor | Interacting protein coding gene | FC | adj.pval |
BRCA | MRPL42 | MRPL32 | -3.7979134181794 | 0.000134327661287861 |
LUAD | MRPL42 | MRPS18A | -1.54123864042049 | 0.000452706327224566 |
LUAD | MRPL42 | MRPL32 | -2.1966239418264 | 0.00121089428940613 |
KIRC | MRPL42 | MRPS18B | -1.08999348010674 | 0.00208385211535325 |
STAD | MRPL42 | MRPS16 | -1.64208084987431 | 0.00239070039242506 |
LIHC | MRPL42 | MRPS18C | -1.25336042046698 | 0.00251545393492315 |
COAD | MRPL42 | MRPS18C | -3.48505830240365 | 0.00322914123535157 |
HNSC | MRPL42 | MRPS16 | -2.01564621821803 | 0.00518989327406416 |
CHOL | MRPL42 | MRPS18B | -1.34341961473083 | 0.0078125 |
BLCA | MRPL42 | MRPS36 | -1.37783544110041 | 0.00823211669921875 |
KICH | MRPL42 | MRPS2 | 1.26543989555015 | 0.0114533305168152 |
LUAD | MRPL42 | MRPS36 | -2.6018646350856 | 0.0160454872238539 |
PRAD | MRPL42 | MRPS18A | -1.89251195553289 | 0.0168224419088856 |
BLCA | MRPL42 | MRPS18B | -2.79316203705083 | 0.0180816650390625 |
KIRP | MRPL42 | MRPS36 | -1.17144906491842 | 0.0194480954669416 |
LUAD | MRPL42 | MRPS18B | -2.59132604284176 | 0.0228310323601027 |
ESCA | MRPL42 | MRPS2 | -3.20556788084675 | 0.0244140625 |
THCA | MRPL42 | MRPS11 | -3.10694728540962 | 0.0252226935182201 |
STAD | MRPL42 | MRPS18B | -2.18783845061495 | 0.0341199110262096 |
KIRC | MRPL42 | MRPL32 | -2.79664327578899 | 0.0376051795400881 |
BLCA | MRPL42 | MRPS11 | -2.30276998968219 | 0.040130615234375 |
LUSC | MRPL42 | MRPS18A | -4.26181803018125 | 1.79996309233889e-05 |
LUSC | MRPL42 | MRPS2 | -2.70930846488508 | 1.92864354932136e-09 |
LIHC | MRPL42 | MRPL32 | -1.20074144698753 | 2.24402029682138e-06 |
BRCA | MRPL42 | MRPS11 | -1.24304977976804 | 2.31302509538916e-07 |
COAD | MRPL42 | MRPS36 | -1.55049755510511 | 2.62260437011719e-06 |
PRAD | MRPL42 | MRPL37 | -2.21074342735295 | 3.65283830814974e-07 |
LUAD | MRPL42 | MRPL37 | -2.86549200993971 | 3.76287422734829e-10 |
LIHC | MRPL42 | MRPS2 | -1.14771055358828 | 4.2584580238307e-05 |
LUSC | MRPL42 | MRPS11 | -2.9004097541444 | 5.43966600483641e-07 |
HNSC | MRPL42 | MRPS18A | -2.4520120168475 | 5.97184352955084e-05 |
BRCA | MRPL42 | MRPL37 | -3.79079551418026 | 9.33185484212232e-10 |
Protein-protein interactors with this translation factor (BIOGRID-3.4.160) |
PPI interactors with MRPL42 |
IKBKAP, EEF1A1, MRPL40, MRPL32, MRPL13, MRPS9, MRPL23, MRPL3, MRPS26, MRPL41, MRPL12, MRPL37, MRPL44, MRPS35, MRPS28, ILF3, HNRNPR, HNRNPU, CYB5B, ICT1, DDX28, FUBP1, HNRNPC, ATP5F1, DLD, rev, MRPL43, RPL13, RPL6, MRPL4, MRPL39, CASQ2, MRPS30, MRPL47, MRPL50, MRPL9, MRPL1, Cdc37, MRPL10, MRPL51, MRPL21, GATC, MRPL45, GADD45GIP1, MRPL11, MRPL38, MRPL27, MRPL30, MRPL49, MRPL28, MRPL55, MRPL24, MRPL20, MRPL35, SIRT3, MRPL22, MRPL57, MRPL2, MALSU1, MRPL17, RNMTL1, MRPL33, MRPL16, MRPS18A, MRPL15, MRPL19, MRPL48, NGRN, MRPL34, MRPL18, MRPL46, ACAA1, HNRNPL, KCTD10, MED23, MED24, MRPL36, MRPL42, MRPS5, PGK1, ROMO1, SRSF7, MRM1, HSPD1, PDK1, TRMT61B, APEX1, RASA1, GRSF1, ACAD9, AUH, C12orf65, C1QBP, C21orf33, C6orf203, CHCHD1, CS, FASTKD2, FASTKD3, FASTKD5, GFM1, GFM2, HINT2, LRPPRC, CCDC109B, MDH2, METTL15, METTL17, MRPS12, MRRF, MTERF3, MTFMT, MTIF2, MTIF3, MTRF1, MTRF1L, PMPCA, PMPCB, RPUSD4, SLIRP, SSBP1, TACO1, TBRG4, TFAM, TMEM70, TRUB2, TSFM, TUFM, VWA8, EXD2, DDX58, AARS2, COX8A, PDHA1, TRAP1, IDE, IGF2BP3, RPL27A, YBX1, RBMS2, MRPL53, MRPL52, H1FNT, SRSF3, GNL3, YBX2, RPL37, FAM120A, S100A2, HGS, NAA15, NOMO1, PTPN11, RPL19, NSUN2, MRPL54, MCMBP, SF3A1, DIS3, AP3B1, LIN28A, TTC1, EIF2AK2, RBM25, PTCD1, LCN1, RPL17, EDC3, TRIP10, CSE1L, PRR3, TOMM40, IDH2, USP19, SUPT5H, NCAPG, PPP1R8, DBNL, PDLIM1, GTF2F1, GTF2I, ARHGAP18, SMEK1, RBMS3, RPL35, SNX1, SNX2, OXSR1, STK26, SNX27, FAM129B, GEMIN5, SYMPK, NEIL1, NMD3, VRK1, ZNF574, IST1, PNPT1, NCAPD2, GNL1, SYNJ2BP, OSBPL8, PTRH2, ADSS, RAP1BL, PGRMC2, ABT1, ALCAM, PRPF40A, KLC2, RBM47, GLS, MSI1, CCDC6, RBM12, FAM49B, SFXN1, WDHD1, FAHD1, OXA1L, PAPOLA, PBK, HIST1H1T, PDS5A, RBM26, UBA6, ARFIP1, HDLBP, PPP1R12A, NAA10, OGFOD1, CLUH, SRRT, PUS1, |
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Clinically associated variants from ClinVar. |
Gene | Chr | Position | RefSeq | VarSeq | RefSeeq | VarType | Pathogenic | Disease | VarInfo |
nsSNVs with sample frequency (size of circle) from TCGA 33 cancers. |
SNVs and Indels |
Gene | Cancer type | Chromosome | Start | End | RefSeeq | MutSeq | Mutation type | AAchange | # samples |
MRPL42 | HNSC | chr12 | 93873224 | 93873224 | G | C | Silent | p.V65V | 2 |
MRPL42 | HNSC | chr12 | 93873187 | 93873187 | C | A | Missense_Mutation | p.S53Y | 2 |
MRPL42 | SARC | chr12 | 93894747 | 93894748 | - | A | RNA | NULL | 2 |
MRPL42 | SKCM | chr12 | 93881291 | 93881291 | C | T | Missense_Mutation | p.P80S | 2 |
MRPL42 | UCEC | chr12 | 93863065 | 93863065 | G | A | Missense_Mutation | p.A2T | 2 |
MRPL42 | OV | chr12 | 93881315 | 93881315 | C | G | Missense_Mutation | p.H88D | 1 |
MRPL42 | HNSC | chr12 | 93881417 | 93881417 | C | A | Missense_Mutation | 1 | |
MRPL42 | OV | chr12 | 93881354 | 93881354 | G | T | Nonsense_Mutation | p.E101* | 1 |
MRPL42 | HNSC | chr12 | 93873187 | 93873187 | C | A | Missense_Mutation | 1 | |
MRPL42 | READ | chr12 | 93894974 | 93894974 | C | T | Silent | p.L136L | 1 |
MRPL42 | SARC | chr12 | 93881334 | 93881334 | C | - | Frame_Shift_Del | 1 | |
MRPL42 | SARC | chr12 | 93881326 | 93881326 | G | T | Silent | 1 | |
MRPL42 | LGG | chr12 | 93881384 | 93881384 | C | A | Missense_Mutation | p.Q111K | 1 |
MRPL42 | LUAD | chr12 | 93863091 | 93863091 | G | T | Missense_Mutation | p.M10I | 1 |
MRPL42 | SARC | chr12 | 93894748 | 93894748 | A | - | RNA | NULL | 1 |
MRPL42 | LUAD | chr12 | 93870766 | 93870766 | A | T | Missense_Mutation | p.Y36F | 1 |
MRPL42 | LUAD | chr12 | 93881322 | 93881322 | A | T | Missense_Mutation | p.Q90L | 1 |
MRPL42 | SKCM | chr12 | 93894980 | 93894980 | C | T | Missense_Mutation | p.P138S | 1 |
MRPL42 | LUAD | chr12 | 93881410 | 93881410 | T | C | Silent | p.T119T | 1 |
MRPL42 | UCEC | chr12 | 93873187 | 93873187 | C | G | Missense_Mutation | p.S53C | 1 |
MRPL42 | COAD | chr12 | 93873236 | 93873236 | T | C | Silent | p.Y69Y | 1 |
MRPL42 | LUSC | chr12 | 93863109 | 93863109 | G | C | Missense_Mutation | p.E10Q | 1 |
MRPL42 | HNSC | chr12 | 93873224 | 93873224 | G | C | Silent | 1 |
Copy number variation (CNV) of MRPL42 * Click on the image to open the original image in a new window. |
Fusion gene breakpoints (product of the structural variants (SVs)) across MRPL42 * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion genes with this translation factor from FusionGDB2.0. |
FusionGDB2 ID | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
99938 | OV | TCGA-61-1918-01A | CRADD | chr12 | 94072848 | + | MRPL42 | chr12 | 93894952 | + |
99938 | STAD | TCGA-BR-4357 | CRADD | chr12 | 94072848 | + | MRPL42 | chr12 | 93894951 | + |
99938 | N/A | FI185375 | GOLGA1 | chr9 | 127702734 | + | MRPL42 | chr12 | 93896662 | - |
99938 | N/A | BU742854 | METTL2B | chr7 | 128144782 | + | MRPL42 | chr12 | 93896901 | - |
97219 | STAD | TCGA-BR-A4J5-01A | MRPL42 | chr12 | 93881436 | + | CNOT2 | chr12 | 70735887 | + |
100814 | SARC | TCGA-DX-A7EI-01A | MRPL42 | chr12 | 93881436 | + | FGD6 | chr12 | 95475332 | - |
55051 | N/A | FN126893 | MRPL42 | chr12 | 93870748 | - | GJD4 | chr10 | 35895472 | + |
94008 | SARC | TCGA-DX-A3M1-01A | MRPL42 | chr12 | 93861330 | + | NTN4 | chr12 | 96131922 | - |
55051 | BLCA | TCGA-CF-A7I0-01A | MRPL42 | chr12 | 93881436 | + | POLR3B | chr12 | 106903198 | + |
55051 | N/A | AA603490 | MRPL42 | chr12 | 93889865 | + | RP11-625L16.1 | chr12 | 24896737 | - |
98970 | N/A | AA643790 | MRPL42 | chr12 | 93864098 | + | RPL35 | chr9 | 127620162 | + |
101313 | PRAD | TCGA-HC-8266-01A | MRPL42 | chr12 | 93870793 | - | ZMIZ1 | chr10 | 81036938 | + |
99938 | READ | TCGA-F5-6863-01A | NUDT4 | chr12 | 93792631 | + | MRPL42 | chr12 | 93894952 | + |
99938 | PRAD | TCGA-YL-A9WY-01A | PIK3R1 | chr5 | 67522837 | + | MRPL42 | chr12 | 93862965 | + |
99938 | SARC | TCGA-DX-A23R | PLEKHG7 | chr12 | 93135368 | + | MRPL42 | chr12 | 93894951 | + |
99938 | SARC | TCGA-DX-A23R-01A | PLEKHG7 | chr12 | 93135368 | + | MRPL42 | chr12 | 93894952 | + |
99942 | PRAD | TCGA-EJ-7315-01A | YBX3 | chr12 | 10875448 | - | MRPL42 | chr12 | 93894951 | + |
99942 | PRAD | TCGA-EJ-7315-01A | YBX3 | chr12 | 10875449 | - | MRPL42 | chr12 | 93894952 | + |
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Kaplan-Meier plots with logrank tests of overall survival (OS) |
Cancer type | Translation factor | Coefficent | Hazard ratio | Wald test pval | Likelihool ratio pval | Logrank test pval | # samples |
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Differential gene expression between female and male. (Wilcoxon test, pval<0.05) |
Cancer type | Translation factor | pval | adj.p |
TGCT | MRPL42 | 0.00172604007941756 | 0.047 |
SARC | MRPL42 | 0.0125394404244077 | 0.33 |
HNSC | MRPL42 | 0.0174590615561644 | 0.44 |
THCA | MRPL42 | 0.0198889653081902 | 0.48 |
LUAD | MRPL42 | 6.68442415845824e-06 | 0.00019 |
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Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05) |
Cancer type | Translation factor | pval | adj.p |
STAD | MRPL42 | 0.0143417089309181 | 0.44 |
LUSC | MRPL42 | 0.046501319774669 | 1 |
KIRC | MRPL42 | 0.00383414863375554 | 0.13 |
GBM | MRPL42 | 0.0448360030373978 | 1 |
OV | MRPL42 | 0.0130454894368407 | 0.42 |
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Drugs targeting genes involved in this translation factor. (DrugBank Version 5.1.8 2021-05-08) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Diseases associated with this translation factor. (DisGeNet 4.0) |
Disease ID | Disease Name | # PubMeds | Disease source |