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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: MRPL42 (NCBI Gene ID:28977)


Gene Summary

check button Gene Summary
Gene InformationGene Name: MRPL42
Gene ID: 28977
Gene Symbol

MRPL42

Gene ID

28977

Gene Namemitochondrial ribosomal protein L42
SynonymsHSPC204|L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT
Cytomap

12q22

Type of Geneprotein-coding
Description39S ribosomal protein L42, mitochondrial28S ribosomal protein S32, mitochondrial39S ribosomal protein L31, mitochondrialmitochondrial large ribosomal subunit protein mL42
Modification date20200313
UniProtAcc

Q9Y6G3


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0005840Ribosome
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25
MRPL42(733 - 1119.25]


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Translation Studies in PubMed

check button We searched PubMed using 'MRPL42[title] AND translation [title] AND human.'
GeneTitlePMID
MRPL42..


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF
ENST0000055221793862964938631315CDS-5UTR
ENST000005499829387072993870793Frame-shift
ENST000005522179387072993870793Frame-shift
ENST000005499829387316393873248Frame-shift
ENST000005522179387316393873248Frame-shift

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
all structure

check buttonExpression level of gene isoforms across TCGA pancancer
all structure

check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
LUADMRPL42-6.346102496024912.48255276366547e-08
KIRCMRPL42-4.3820953362485.26630854166927e-06


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through copy number variation of Translation factor
all structure
Cancer typeGeneCoefficientPvalue
SARCMRPL420.2747054820.042418528

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with MRPL42 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
all structure
Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
COADEpifactorMRPL42UBE2N0.8241423439.88E-83
LUSCEpifactorMRPL42UBE2N0.8012487235.27E-125
OVEpifactorMRPL42UBE2N0.8369752214.15E-82
READEpifactorMRPL42UBE2N0.8346958671.93E-28
SKCMEpifactorMRPL42ACTR60.8198858572.14E-116
TGCTEpifactorMRPL42HELLS0.8109888941.11E-37
UVMCell metabolism geneMRPL42XRN20.8010366154.63E-19
UVMCell metabolism geneMRPL42FAR10.8012351024.47E-19
UVMCell metabolism geneMRPL42AGPS0.8016766824.14E-19
UVMCell metabolism geneMRPL42NAMPT0.8017186124.10E-19
UVMCell metabolism geneMRPL42ETNK10.8022954113.71E-19
UVMCell metabolism geneMRPL42GNPDA20.8030653453.23E-19
UVMCell metabolism geneMRPL42PIGB0.8044226212.54E-19
UVMCell metabolism geneMRPL42C1GALT1C10.8059933191.91E-19
UVMCell metabolism geneMRPL42SGPP10.8060421061.90E-19
UVMCell metabolism geneMRPL42DLD0.8063233731.80E-19
UVMCell metabolism geneMRPL42SRP190.8068566441.64E-19
UVMCell metabolism geneMRPL42VAPA0.8072098261.54E-19
UVMCell metabolism geneMRPL42FUT80.8080874041.31E-19
UVMCell metabolism geneMRPL42PLA2G12A0.8083616921.24E-19
UVMCell metabolism geneMRPL42IDI10.8096220059.87E-20
UVMCell metabolism geneMRPL42MDH10.8097842129.58E-20
UVMCell metabolism geneMRPL42POLR2K0.811407147.09E-20
UVMCell metabolism geneMRPL42SACM1L0.8114282047.06E-20
UVMCell metabolism geneMRPL42PIGA0.8139291774.41E-20
UVMCell metabolism geneMRPL42NUDT120.8142333444.17E-20
UVMCell metabolism geneMRPL42PAFAH1B10.8142343514.17E-20
UVMCell metabolism geneMRPL42DIS30.8162353552.84E-20
UVMCell metabolism geneMRPL42PIK3C30.8166557142.62E-20
UVMCell metabolism geneMRPL42ACSL40.8168026012.55E-20
UVMCell metabolism geneMRPL42MED70.8172031862.36E-20
UVMCell metabolism geneMRPL42GFPT10.819071031.64E-20
UVMCell metabolism geneMRPL42NANP0.819311491.57E-20
UVMCell metabolism geneMRPL42PSMD120.8194026211.54E-20
UVMCell metabolism geneMRPL42DLAT0.8199633181.38E-20
UVMCell metabolism geneMRPL42SEH1L0.8213578181.05E-20
UVMCell metabolism geneMRPL42SRP540.8226091668.17E-21
UVMCell metabolism geneMRPL42GRPEL20.8256782314.40E-21
UVMCell metabolism geneMRPL42CMAS0.8268361213.47E-21
UVMCell metabolism geneMRPL42MGAT20.8277346622.89E-21
UVMCell metabolism geneMRPL42DCK0.8300690521.78E-21
UVMCell metabolism geneMRPL42PITPNB0.8309630441.47E-21
UVMCell metabolism geneMRPL42MED170.8317453331.25E-21
UVMCell metabolism geneMRPL42UGGT20.8319618181.19E-21
UVMCell metabolism geneMRPL42VBP10.8334161218.75E-22
UVMCell metabolism geneMRPL42TIMM17A0.8352780425.86E-22
UVMCell metabolism geneMRPL42SRP720.835490485.60E-22
UVMCell metabolism geneMRPL42TRAM10.8392045582.48E-22
UVMCell metabolism geneMRPL42CCT20.8400294462.06E-22
UVMCell metabolism geneMRPL42MCEE0.8402838871.95E-22
UVMCell metabolism geneMRPL42SPTLC10.8407041671.77E-22
UVMCell metabolism geneMRPL42HMGCR0.8412351571.57E-22
UVMCell metabolism geneMRPL42PRKAA10.8423435641.22E-22
UVMCell metabolism geneMRPL42RAP1B0.8425869471.16E-22
UVMCell metabolism geneMRPL42EDEM30.8429034631.08E-22
UVMCell metabolism geneMRPL42RPE0.8444826437.49E-23
UVMCell metabolism geneMRPL42PI4K2B0.8452155316.32E-23
UVMCell metabolism geneMRPL42CLOCK0.8460723285.18E-23
UVMCell metabolism geneMRPL42CNOT80.8477491843.49E-23
UVMCell metabolism geneMRPL42LCLAT10.8484916492.93E-23
UVMCell metabolism geneMRPL42MTMR60.8494595272.33E-23
UVMCell metabolism geneMRPL42IMPA10.8504472431.83E-23
UVMCell metabolism geneMRPL42AZIN10.8513160971.49E-23
UVMCell metabolism geneMRPL42EPT10.8520046591.26E-23
UVMCell metabolism geneMRPL42PHAX0.8524557381.13E-23
UVMCell metabolism geneMRPL42POLR2B0.8525085361.11E-23
UVMCell metabolism geneMRPL42GPD20.8536041088.50E-24
UVMCell metabolism geneMRPL42PSMC60.8538193798.06E-24
UVMCell metabolism geneMRPL42BPNT10.8541739647.39E-24
UVMCell metabolism geneMRPL42SLC25A320.8574024723.29E-24
UVMCell metabolism geneMRPL42ARFGEF20.8645556085.09E-25
UVMCell metabolism geneMRPL42PSME40.8659977073.45E-25
UVMCell metabolism geneMRPL42PIK3C2A0.8666476292.89E-25
UVMCell metabolism geneMRPL42PANK30.871078488.45E-26
UVMCell metabolism geneMRPL42PSMA40.8744798023.19E-26
UVMCell metabolism geneMRPL42PPAT0.8808074314.80E-27
UVMCell metabolism geneMRPL42PSMD140.8841040861.71E-27
UVMCell metabolism geneMRPL42NUP500.8842238591.65E-27
UVMCell metabolism geneMRPL42XPO10.8866502067.58E-28
UVMCell metabolism geneMRPL42TGS10.8891240093.36E-28
UVMCell metabolism geneMRPL42TNPO10.8914539091.54E-28
UVMCell metabolism geneMRPL42LYPLA10.8922400771.18E-28
UVMCGCMRPL42ITGAV0.8003685925.20E-19
UVMCGCMRPL42STAG20.8014925934.27E-19
UVMCGCMRPL42POT10.8015038654.26E-19
UVMCGCMRPL42ETNK10.8022954113.71E-19
UVMCGCMRPL42AFF40.802331523.68E-19
UVMCGCMRPL42MSH20.8031955913.16E-19
UVMCGCMRPL42ARID20.8041880982.65E-19
UVMCGCMRPL42TCF120.8100576939.11E-20
UVMCGCMRPL42PWWP2A0.8170354512.44E-20
UVMCGCMRPL42EZH20.8176989252.14E-20
UVMCGCMRPL42UBR50.8258244754.27E-21
UVMCGCMRPL42ABI10.8296943711.92E-21
UVMCGCMRPL42RAD170.8305871261.59E-21
UVMCGCMRPL42SF3B10.8336537598.32E-22
UVMCGCMRPL42TOP10.8337118658.22E-22
UVMCGCMRPL42TCEA10.8352403635.91E-22
UVMCGCMRPL42ZMYM20.8359004885.12E-22
UVMCGCMRPL42KRAS0.8367951224.21E-22
UVMCGCMRPL42USP80.8372705523.80E-22
UVMCGCMRPL42PMS10.8375051973.60E-22
UVMCGCMRPL42GOLGA50.8383442933.00E-22
UVMCGCMRPL42CUL30.8391391062.51E-22
UVMCGCMRPL42JAK20.8437637988.83E-23
UVMCGCMRPL42FBXO110.844708087.11E-23
UVMCGCMRPL42BAZ1A0.8496446262.22E-23
UVMCGCMRPL42CREB10.8508596181.66E-23
UVMCGCMRPL42SUZ120.8509368911.63E-23
UVMCGCMRPL42ATM0.8509677121.62E-23
UVMCGCMRPL42KIF5B0.859190822.08E-24
UVMCGCMRPL42CDC730.8608566681.35E-24
UVMCGCMRPL42BMPR1A0.863191477.33E-25
UVMCGCMRPL42RAD210.8663471973.14E-25
UVMCGCMRPL42NBN0.8786781759.18E-27
UVMCGCMRPL42RABEP10.8802340665.72E-27
UVMCGCMRPL42XPO10.8866502067.58E-28
UVMEpifactorMRPL42PCGF60.8007565364.86E-19
UVMEpifactorMRPL42ATF20.8010155994.65E-19
UVMEpifactorMRPL42ZRANB30.8018124374.04E-19
UVMEpifactorMRPL42SUDS30.8020085663.90E-19
UVMEpifactorMRPL42BRWD30.8031629413.18E-19
UVMEpifactorMRPL42ARID20.8041880982.65E-19
UVMEpifactorMRPL42DNTTIP20.8049963842.29E-19
UVMEpifactorMRPL42SMARCAD10.8075224841.45E-19
UVMEpifactorMRPL42PARG0.8094284531.02E-19
UVMEpifactorMRPL42INO80D0.8098953519.39E-20
UVMEpifactorMRPL42CUL50.8108780827.82E-20
UVMEpifactorMRPL42YEATS40.8114582387.02E-20
UVMEpifactorMRPL42RAD54B0.816210462.86E-20
UVMEpifactorMRPL42EZH20.8176989252.14E-20
UVMEpifactorMRPL42JMJD1C0.8191154861.63E-20
UVMEpifactorMRPL42YY10.8195577021.49E-20
UVMEpifactorMRPL42NSL10.8209039681.15E-20
UVMEpifactorMRPL42BRMS1L0.8212494361.07E-20
UVMEpifactorMRPL42HMGB10.8213899471.04E-20
UVMEpifactorMRPL42ANP32E0.8241985985.94E-21
UVMEpifactorMRPL42EPC20.8258099734.28E-21
UVMEpifactorMRPL42UBR50.8258244754.27E-21
UVMEpifactorMRPL42BRCC30.8263523523.83E-21
UVMEpifactorMRPL42TLK10.8264671213.75E-21
UVMEpifactorMRPL42ATAD2B0.8289826912.23E-21
UVMEpifactorMRPL42SF3B10.8336537598.32E-22
UVMEpifactorMRPL42SMEK10.8346405966.73E-22
UVMEpifactorMRPL42ZMYM20.8359004885.12E-22
UVMEpifactorMRPL42USP150.837541573.58E-22
UVMEpifactorMRPL42FAM175B0.8378303583.36E-22
UVMEpifactorMRPL42CUL30.8391391062.51E-22
UVMEpifactorMRPL42CHUK0.8396478522.24E-22
UVMEpifactorMRPL42PRKAA10.8423435641.22E-22
UVMEpifactorMRPL42JAK20.8437637988.83E-23
UVMEpifactorMRPL42TAF70.8438668418.63E-23
UVMEpifactorMRPL42TDG0.8455325325.87E-23
UVMEpifactorMRPL42CLOCK0.8460723285.18E-23
UVMEpifactorMRPL42MASTL0.8464004424.79E-23
UVMEpifactorMRPL42BAZ1A0.8496446262.22E-23
UVMEpifactorMRPL42CUL20.8507725281.70E-23
UVMEpifactorMRPL42SUZ120.8509368911.63E-23
UVMEpifactorMRPL42ATM0.8509677121.62E-23
UVMEpifactorMRPL42SMARCA50.8542946577.17E-24
UVMEpifactorMRPL42ACTR60.8551825975.75E-24
UVMEpifactorMRPL42CBX30.8558840514.82E-24
UVMEpifactorMRPL42RLIM0.859288512.03E-24
UVMEpifactorMRPL42CDC730.8608566681.35E-24
UVMEpifactorMRPL42UCHL50.8642148665.58E-25
UVMEpifactorMRPL42AEBP20.8689906431.52E-25
UVMEpifactorMRPL42CDK170.8715855967.32E-26
UVMEpifactorMRPL42TAF20.8729630054.94E-26
UVMEpifactorMRPL42HAT10.8741470443.51E-26
UVMEpifactorMRPL42PHF20L10.8758479382.13E-26
UVMEpifactorMRPL42NBN0.8786781759.18E-27
UVMEpifactorMRPL42SMEK20.8918140441.36E-28
UVMIUPHARMRPL42ITGAV0.8003685925.20E-19
UVMIUPHARMRPL42EGLN10.8008320934.80E-19
UVMIUPHARMRPL42NEK70.8015178214.25E-19
UVMIUPHARMRPL42DYRK20.8019288233.96E-19
UVMIUPHARMRPL42BRWD30.8031629413.18E-19
UVMIUPHARMRPL42SGPP10.8060421061.90E-19
UVMIUPHARMRPL42NIPAL20.8063922641.78E-19
UVMIUPHARMRPL42ATP6V0A20.8064422641.77E-19
UVMIUPHARMRPL42RPS6KC10.8079720971.34E-19
UVMIUPHARMRPL42TAOK30.8081679161.29E-19
UVMIUPHARMRPL42PLA2G12A0.8083616921.24E-19
UVMIUPHARMRPL42IDI10.8096220059.87E-20
UVMIUPHARMRPL42PLK40.8111364467.46E-20
UVMIUPHARMRPL42SLC30A90.8134950844.79E-20
UVMIUPHARMRPL42ATP11C0.8140747514.29E-20
UVMIUPHARMRPL42SLC25A460.8144286514.02E-20
UVMIUPHARMRPL42SLC30A60.8159601223.00E-20
UVMIUPHARMRPL42PIK3C30.8166557142.62E-20
UVMIUPHARMRPL42ATP2B10.8174652412.24E-20
UVMIUPHARMRPL42EZH20.8176989252.14E-20
UVMIUPHARMRPL42CYP51A10.8177806042.11E-20
UVMIUPHARMRPL42JMJD1C0.8191154861.63E-20
UVMIUPHARMRPL42TNKS20.8202668931.30E-20
UVMIUPHARMRPL42CSNK1G30.8208084811.17E-20
UVMIUPHARMRPL42TMEM1650.8225886668.20E-21
UVMIUPHARMRPL42RIOK30.8230094947.54E-21
UVMIUPHARMRPL42STK17A0.8232797647.14E-21
UVMIUPHARMRPL42TLK10.8264671213.75E-21
UVMIUPHARMRPL42MAP3K20.8272494013.19E-21
UVMIUPHARMRPL42ATAD2B0.8289826912.23E-21
UVMIUPHARMRPL42BMPR20.829152172.15E-21
UVMIUPHARMRPL42TOP10.8337118658.22E-22
UVMIUPHARMRPL42KRAS0.8367951224.21E-22
UVMIUPHARMRPL42CHUK0.8396478522.24E-22
UVMIUPHARMRPL42RIOK20.8399636912.09E-22
UVMIUPHARMRPL42SPTLC10.8407041671.77E-22
UVMIUPHARMRPL42MAGT10.8408686611.71E-22
UVMIUPHARMRPL42HMGCR0.8412351571.57E-22
UVMIUPHARMRPL42ADAM170.8419588341.33E-22
UVMIUPHARMRPL42PRKAA10.8423435641.22E-22
UVMIUPHARMRPL42NAPEPLD0.8426340761.14E-22
UVMIUPHARMRPL42JAK20.8437637988.83E-23
UVMIUPHARMRPL42FBXO110.844708087.11E-23
UVMIUPHARMRPL42PI4K2B0.8452155316.32E-23
UVMIUPHARMRPL42CSNK1A10.8453938736.06E-23
UVMIUPHARMRPL42CLOCK0.8460723285.18E-23
UVMIUPHARMRPL42MASTL0.8464004424.79E-23
UVMIUPHARMRPL42SLC30A50.846521584.66E-23
UVMIUPHARMRPL42XIAP0.8469549374.21E-23
UVMIUPHARMRPL42BAZ1A0.8496446262.22E-23
UVMIUPHARMRPL42IDE0.850045272.02E-23
UVMIUPHARMRPL42IMPA10.8504472431.83E-23
UVMIUPHARMRPL42ATM0.8509677121.62E-23
UVMIUPHARMRPL42ABCB100.8529008071.01E-23
UVMIUPHARMRPL42SLC25A320.8574024723.29E-24
UVMIUPHARMRPL42BMPR1A0.863191477.33E-25
UVMIUPHARMRPL42TBK10.8645476965.10E-25
UVMIUPHARMRPL42PIK3C2A0.8666476292.89E-25
UVMIUPHARMRPL42MAPK60.870080081.12E-25
UVMIUPHARMRPL42CDK170.8715855967.32E-26
UVMIUPHARMRPL42ATP6V1C10.8739397353.73E-26
UVMIUPHARMRPL42HAT10.8741470443.51E-26
UVMIUPHARMRPL42STK30.8788086398.83E-27
UVMIUPHARMRPL42PPAT0.8808074314.80E-27
UVMIUPHARMRPL42VRK20.8809736554.56E-27
UVMIUPHARMRPL42PSMD140.8841040861.71E-27
UVMIUPHARMRPL42XPO10.8866502067.58E-28
UVMIUPHARMRPL42USP140.8921241681.22E-28
UVMIUPHARMRPL42PRMT30.8931628288.56E-29
UVMIUPHARMRPL42MAP4K30.8934208277.83E-29
UVMKinaseMRPL42NEK70.8015178214.25E-19
UVMKinaseMRPL42DYRK20.8019288233.96E-19
UVMKinaseMRPL42RPS6KC10.8079720971.34E-19
UVMKinaseMRPL42TAOK30.8081679161.29E-19
UVMKinaseMRPL42PLK40.8111364467.46E-20
UVMKinaseMRPL42CSNK1G30.8208084811.17E-20
UVMKinaseMRPL42RIOK30.8230094947.54E-21
UVMKinaseMRPL42STK17A0.8232797647.14E-21
UVMKinaseMRPL42TLK10.8264671213.75E-21
UVMKinaseMRPL42MAP3K20.8272494013.19E-21
UVMKinaseMRPL42BMPR20.829152172.15E-21
UVMKinaseMRPL42CHUK0.8396478522.24E-22
UVMKinaseMRPL42RIOK20.8399636912.09E-22
UVMKinaseMRPL42PRKAA10.8423435641.22E-22
UVMKinaseMRPL42JAK20.8437637988.83E-23
UVMKinaseMRPL42CSNK1A10.8453938736.06E-23
UVMKinaseMRPL42MASTL0.8464004424.79E-23
UVMKinaseMRPL42BAZ1A0.8496446262.22E-23
UVMKinaseMRPL42ATM0.8509677121.62E-23
UVMKinaseMRPL42BMPR1A0.863191477.33E-25
UVMKinaseMRPL42TBK10.8645476965.10E-25
UVMKinaseMRPL42MAPK60.870080081.12E-25
UVMKinaseMRPL42CDK170.8715855967.32E-26
UVMKinaseMRPL42STK30.8788086398.83E-27
UVMKinaseMRPL42VRK20.8809736554.56E-27
UVMKinaseMRPL42MAP4K30.8934208277.83E-29
UVMTFMRPL42PCGF60.8007565364.86E-19
UVMTFMRPL42ZNF7910.8008108744.82E-19
UVMTFMRPL42ATF20.8010155994.65E-19
UVMTFMRPL42ZNF33A0.801588264.20E-19
UVMTFMRPL42ZNF2220.8023093023.70E-19
UVMTFMRPL42ZNF75D0.8028197513.38E-19
UVMTFMRPL42ZNF7010.8036573322.91E-19
UVMTFMRPL42ZNF4410.8038096762.83E-19
UVMTFMRPL42CREM0.8039736382.75E-19
UVMTFMRPL42ARID20.8041880982.65E-19
UVMTFMRPL42ZNF450.8042490482.62E-19
UVMTFMRPL42ZNF2250.8066215221.71E-19
UVMTFMRPL42ZNF2600.8075747541.44E-19
UVMTFMRPL42ZNF3970.8090389561.10E-19
UVMTFMRPL42ZNF2340.809192411.07E-19
UVMTFMRPL42TCF120.8100576939.11E-20
UVMTFMRPL42ZNF6800.8106652388.14E-20
UVMTFMRPL42ELK30.8109111387.78E-20
UVMTFMRPL42ZNF5100.8109886887.66E-20
UVMTFMRPL42ZNF5270.8113593597.15E-20
UVMTFMRPL42PRDM100.8122919766.01E-20
UVMTFMRPL42ZNF4300.812666485.60E-20
UVMTFMRPL42ZNF1010.8147747733.76E-20
UVMTFMRPL42ZNF2260.8152702573.42E-20
UVMTFMRPL42FOXN20.815796373.09E-20
UVMTFMRPL42ZNF3830.8169069222.50E-20
UVMTFMRPL42ZBTB100.8176472152.17E-20
UVMTFMRPL42ADNP20.8192909711.57E-20
UVMTFMRPL42YY10.8195577021.49E-20
UVMTFMRPL42ZNF1400.8208716091.15E-20
UVMTFMRPL42ZNF8000.8213275921.05E-20
UVMTFMRPL42ZNF5460.8228443867.79E-21
UVMTFMRPL42CEBPG0.8233592377.03E-21
UVMTFMRPL42ZNF4840.823913016.29E-21
UVMTFMRPL42ZNF240.8247523055.31E-21
UVMTFMRPL42ZNF5720.8248608855.19E-21
UVMTFMRPL42MEF2A0.8262999533.88E-21
UVMTFMRPL42AHCTF10.8278986652.79E-21
UVMTFMRPL42ZNF4490.8279057042.79E-21
UVMTFMRPL42ZNF1820.8308603731.51E-21
UVMTFMRPL42ZNF2810.8322066091.13E-21
UVMTFMRPL42ELF10.8331518479.26E-22
UVMTFMRPL42GPBP10.8339939367.73E-22
UVMTFMRPL42ZNF1360.8344930666.95E-22
UVMTFMRPL42ZNF4680.8345306496.89E-22
UVMTFMRPL42SMAD50.8357819155.25E-22
UVMTFMRPL42ZNF1810.8370232174.01E-22
UVMTFMRPL42THAP50.8374958673.61E-22
UVMTFMRPL42SP30.838575742.85E-22
UVMTFMRPL42ZNF780A0.8403830431.90E-22
UVMTFMRPL42BACH10.8413524051.53E-22
UVMTFMRPL42ZNF1310.8424780541.19E-22
UVMTFMRPL42IKZF50.8426441461.14E-22
UVMTFMRPL42ZBTB10.8444424227.56E-23
UVMTFMRPL42E2F50.8457822415.54E-23
UVMTFMRPL42CLOCK0.8460723285.18E-23
UVMTFMRPL42ZNF280.8482880313.07E-23
UVMTFMRPL42ZNF1460.8497057892.19E-23
UVMTFMRPL42CREB10.8508596181.66E-23
UVMTFMRPL42ZNF2670.8510759511.58E-23
UVMTFMRPL42ZNF6750.8554647495.36E-24
UVMTFMRPL42TOPORS0.8564671194.17E-24
UVMTFMRPL42ZBTB60.8567061433.92E-24
UVMTFMRPL42ZNF430.8599728171.70E-24
UVMTFMRPL42ZNF4510.861279191.21E-24
UVMTFMRPL42AEBP20.8689906431.52E-25
UVMTFMRPL42TERF10.8759534122.07E-26
UVMTFMRPL42CEBPZ0.8781325621.08E-26
UVMTFMRPL42PRMT30.8931628288.56E-29
UVMTSGMRPL42ITGAV0.8003685925.20E-19
UVMTSGMRPL42EGLN10.8008320934.80E-19
UVMTSGMRPL42CCAR10.801468984.29E-19
UVMTSGMRPL42MSH20.8031955913.16E-19
UVMTSGMRPL42CREM0.8039736382.75E-19
UVMTSGMRPL42ARID20.8041880982.65E-19
UVMTSGMRPL42PTPN20.805191212.21E-19
UVMTSGMRPL42MLH30.8066483761.70E-19
UVMTSGMRPL42VEZT0.8068033221.65E-19
UVMTSGMRPL42KRIT10.8080244091.32E-19
UVMTSGMRPL42RBBP80.8096230999.87E-20
UVMTSGMRPL42CUL50.8108780827.82E-20
UVMTSGMRPL42GORAB0.8124841315.80E-20
UVMTSGMRPL42PAFAH1B10.8142343514.17E-20
UVMTSGMRPL42EZH20.8176989252.14E-20
UVMTSGMRPL42PPP2R5C0.8190982651.63E-20
UVMTSGMRPL42RB1CC10.8200490611.36E-20
UVMTSGMRPL42PTPN120.8239606366.23E-21
UVMTSGMRPL42INTS60.827289093.16E-21
UVMTSGMRPL42ANXA70.8282144312.61E-21
UVMTSGMRPL42BMPR20.829152172.15E-21
UVMTSGMRPL42GGNBP20.8314911911.32E-21
UVMTSGMRPL42WDR110.8319884941.19E-21
UVMTSGMRPL42CHUK0.8396478522.24E-22
UVMTSGMRPL42PDS5B0.8412103351.58E-22
UVMTSGMRPL42PRKAA10.8423435641.22E-22
UVMTSGMRPL42NAPEPLD0.8426340761.14E-22
UVMTSGMRPL42CSNK1A10.8453938736.06E-23
UVMTSGMRPL42RINT10.8496120782.24E-23
UVMTSGMRPL42CUL20.8507725281.70E-23
UVMTSGMRPL42SUZ120.8509368911.63E-23
UVMTSGMRPL42ATM0.8509677121.62E-23
UVMTSGMRPL42LIN90.852812041.03E-23
UVMTSGMRPL42TOPORS0.8564671194.17E-24
UVMTSGMRPL42GTPBP40.8607082761.41E-24
UVMTSGMRPL42CDC730.8608566681.35E-24
UVMTSGMRPL42BMPR1A0.863191477.33E-25
UVMTSGMRPL42SMCHD10.8686635091.66E-25
UVMTSGMRPL42NBN0.8786781759.18E-27


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
check button
* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
BRCAMRPL42MRPL32-3.79791341817940.000134327661287861
LUADMRPL42MRPS18A-1.541238640420490.000452706327224566
LUADMRPL42MRPL32-2.19662394182640.00121089428940613
KIRCMRPL42MRPS18B-1.089993480106740.00208385211535325
STADMRPL42MRPS16-1.642080849874310.00239070039242506
LIHCMRPL42MRPS18C-1.253360420466980.00251545393492315
COADMRPL42MRPS18C-3.485058302403650.00322914123535157
HNSCMRPL42MRPS16-2.015646218218030.00518989327406416
CHOLMRPL42MRPS18B-1.343419614730830.0078125
BLCAMRPL42MRPS36-1.377835441100410.00823211669921875
KICHMRPL42MRPS21.265439895550150.0114533305168152
LUADMRPL42MRPS36-2.60186463508560.0160454872238539
PRADMRPL42MRPS18A-1.892511955532890.0168224419088856
BLCAMRPL42MRPS18B-2.793162037050830.0180816650390625
KIRPMRPL42MRPS36-1.171449064918420.0194480954669416
LUADMRPL42MRPS18B-2.591326042841760.0228310323601027
ESCAMRPL42MRPS2-3.205567880846750.0244140625
THCAMRPL42MRPS11-3.106947285409620.0252226935182201
STADMRPL42MRPS18B-2.187838450614950.0341199110262096
KIRCMRPL42MRPL32-2.796643275788990.0376051795400881
BLCAMRPL42MRPS11-2.302769989682190.040130615234375
LUSCMRPL42MRPS18A-4.261818030181251.79996309233889e-05
LUSCMRPL42MRPS2-2.709308464885081.92864354932136e-09
LIHCMRPL42MRPL32-1.200741446987532.24402029682138e-06
BRCAMRPL42MRPS11-1.243049779768042.31302509538916e-07
COADMRPL42MRPS36-1.550497555105112.62260437011719e-06
PRADMRPL42MRPL37-2.210743427352953.65283830814974e-07
LUADMRPL42MRPL37-2.865492009939713.76287422734829e-10
LIHCMRPL42MRPS2-1.147710553588284.2584580238307e-05
LUSCMRPL42MRPS11-2.90040975414445.43966600483641e-07
HNSCMRPL42MRPS18A-2.45201201684755.97184352955084e-05
BRCAMRPL42MRPL37-3.790795514180269.33185484212232e-10


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with MRPL42
IKBKAP, EEF1A1, MRPL40, MRPL32, MRPL13, MRPS9, MRPL23, MRPL3, MRPS26, MRPL41, MRPL12, MRPL37, MRPL44, MRPS35, MRPS28, ILF3, HNRNPR, HNRNPU, CYB5B, ICT1, DDX28, FUBP1, HNRNPC, ATP5F1, DLD, rev, MRPL43, RPL13, RPL6, MRPL4, MRPL39, CASQ2, MRPS30, MRPL47, MRPL50, MRPL9, MRPL1, Cdc37, MRPL10, MRPL51, MRPL21, GATC, MRPL45, GADD45GIP1, MRPL11, MRPL38, MRPL27, MRPL30, MRPL49, MRPL28, MRPL55, MRPL24, MRPL20, MRPL35, SIRT3, MRPL22, MRPL57, MRPL2, MALSU1, MRPL17, RNMTL1, MRPL33, MRPL16, MRPS18A, MRPL15, MRPL19, MRPL48, NGRN, MRPL34, MRPL18, MRPL46, ACAA1, HNRNPL, KCTD10, MED23, MED24, MRPL36, MRPL42, MRPS5, PGK1, ROMO1, SRSF7, MRM1, HSPD1, PDK1, TRMT61B, APEX1, RASA1, GRSF1, ACAD9, AUH, C12orf65, C1QBP, C21orf33, C6orf203, CHCHD1, CS, FASTKD2, FASTKD3, FASTKD5, GFM1, GFM2, HINT2, LRPPRC, CCDC109B, MDH2, METTL15, METTL17, MRPS12, MRRF, MTERF3, MTFMT, MTIF2, MTIF3, MTRF1, MTRF1L, PMPCA, PMPCB, RPUSD4, SLIRP, SSBP1, TACO1, TBRG4, TFAM, TMEM70, TRUB2, TSFM, TUFM, VWA8, EXD2, DDX58, AARS2, COX8A, PDHA1, TRAP1, IDE, IGF2BP3, RPL27A, YBX1, RBMS2, MRPL53, MRPL52, H1FNT, SRSF3, GNL3, YBX2, RPL37, FAM120A, S100A2, HGS, NAA15, NOMO1, PTPN11, RPL19, NSUN2, MRPL54, MCMBP, SF3A1, DIS3, AP3B1, LIN28A, TTC1, EIF2AK2, RBM25, PTCD1, LCN1, RPL17, EDC3, TRIP10, CSE1L, PRR3, TOMM40, IDH2, USP19, SUPT5H, NCAPG, PPP1R8, DBNL, PDLIM1, GTF2F1, GTF2I, ARHGAP18, SMEK1, RBMS3, RPL35, SNX1, SNX2, OXSR1, STK26, SNX27, FAM129B, GEMIN5, SYMPK, NEIL1, NMD3, VRK1, ZNF574, IST1, PNPT1, NCAPD2, GNL1, SYNJ2BP, OSBPL8, PTRH2, ADSS, RAP1BL, PGRMC2, ABT1, ALCAM, PRPF40A, KLC2, RBM47, GLS, MSI1, CCDC6, RBM12, FAM49B, SFXN1, WDHD1, FAHD1, OXA1L, PAPOLA, PBK, HIST1H1T, PDS5A, RBM26, UBA6, ARFIP1, HDLBP, PPP1R12A, NAA10, OGFOD1, CLUH, SRRT, PUS1,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
MRPL42HNSCchr129387322493873224GCSilentp.V65V2
MRPL42HNSCchr129387318793873187CAMissense_Mutationp.S53Y2
MRPL42SARCchr129389474793894748-ARNANULL2
MRPL42SKCMchr129388129193881291CTMissense_Mutationp.P80S2
MRPL42UCECchr129386306593863065GAMissense_Mutationp.A2T2
MRPL42OVchr129388131593881315CGMissense_Mutationp.H88D1
MRPL42HNSCchr129388141793881417CAMissense_Mutation1
MRPL42OVchr129388135493881354GTNonsense_Mutationp.E101*1
MRPL42HNSCchr129387318793873187CAMissense_Mutation1
MRPL42READchr129389497493894974CTSilentp.L136L1
MRPL42SARCchr129388133493881334C-Frame_Shift_Del1
MRPL42SARCchr129388132693881326GTSilent1
MRPL42LGGchr129388138493881384CAMissense_Mutationp.Q111K1
MRPL42LUADchr129386309193863091GTMissense_Mutationp.M10I1
MRPL42SARCchr129389474893894748A-RNANULL1
MRPL42LUADchr129387076693870766ATMissense_Mutationp.Y36F1
MRPL42LUADchr129388132293881322ATMissense_Mutationp.Q90L1
MRPL42SKCMchr129389498093894980CTMissense_Mutationp.P138S1
MRPL42LUADchr129388141093881410TCSilentp.T119T1
MRPL42UCECchr129387318793873187CGMissense_Mutationp.S53C1
MRPL42COADchr129387323693873236TCSilentp.Y69Y1
MRPL42LUSCchr129386310993863109GCMissense_Mutationp.E10Q1
MRPL42HNSCchr129387322493873224GCSilent1

check buttonCopy number variation (CNV) of MRPL42
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across MRPL42
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
99938OVTCGA-61-1918-01ACRADDchr1294072848+MRPL42chr1293894952+
99938STADTCGA-BR-4357CRADDchr1294072848+MRPL42chr1293894951+
99938N/AFI185375GOLGA1chr9127702734+MRPL42chr1293896662-
99938N/ABU742854METTL2Bchr7128144782+MRPL42chr1293896901-
97219STADTCGA-BR-A4J5-01AMRPL42chr1293881436+CNOT2chr1270735887+
100814SARCTCGA-DX-A7EI-01AMRPL42chr1293881436+FGD6chr1295475332-
55051N/AFN126893MRPL42chr1293870748-GJD4chr1035895472+
94008SARCTCGA-DX-A3M1-01AMRPL42chr1293861330+NTN4chr1296131922-
55051BLCATCGA-CF-A7I0-01AMRPL42chr1293881436+POLR3Bchr12106903198+
55051N/AAA603490MRPL42chr1293889865+RP11-625L16.1chr1224896737-
98970N/AAA643790MRPL42chr1293864098+RPL35chr9127620162+
101313PRADTCGA-HC-8266-01AMRPL42chr1293870793-ZMIZ1chr1081036938+
99938READTCGA-F5-6863-01ANUDT4chr1293792631+MRPL42chr1293894952+
99938PRADTCGA-YL-A9WY-01APIK3R1chr567522837+MRPL42chr1293862965+
99938SARCTCGA-DX-A23RPLEKHG7chr1293135368+MRPL42chr1293894951+
99938SARCTCGA-DX-A23R-01APLEKHG7chr1293135368+MRPL42chr1293894952+
99942PRADTCGA-EJ-7315-01AYBX3chr1210875448-MRPL42chr1293894951+
99942PRADTCGA-EJ-7315-01AYBX3chr1210875449-MRPL42chr1293894952+


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
TGCTMRPL420.001726040079417560.047
SARCMRPL420.01253944042440770.33
HNSCMRPL420.01745906155616440.44
THCAMRPL420.01988896530819020.48
LUADMRPL426.68442415845824e-060.00019

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
STADMRPL420.01434170893091810.44
LUSCMRPL420.0465013197746691
KIRCMRPL420.003834148633755540.13
GBMMRPL420.04483600303739781
OVMRPL420.01304548943684070.42

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source