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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: RPL22 (NCBI Gene ID:6146)


Gene Summary

check button Gene Summary
Gene InformationGene Name: RPL22
Gene ID: 6146
Gene Symbol

RPL22

Gene ID

6146

Gene Nameribosomal protein L22
SynonymsEAP|HBP15|HBP15/L22|L22
Cytomap

1p36.31

Type of Geneprotein-coding
Description60S ribosomal protein L22EBER-associated proteinEpstein-Barr virus small RNA-associated proteinEpstein-Barr-encoded RNA-associated proteinheparin-binding protein 15heparin-binding protein HBp15large ribosomal subunit protein eL22
Modification date20200313
UniProtAcc

P35268


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0006417Regulation of translation
GO:0005840Ribosome
GO:0002181Cytoplasmic translation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25
RPL22>1119.25


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Translation Studies in PubMed

check button We searched PubMed using 'RPL22[title] AND translation [title] AND human.'
GeneTitlePMID
RPL22..


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF
ENST0000023487562529896253114Frame-shift
ENST0000023487562577116257816In-frame

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)
ENST0000023487562577116257816209552156128439

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.
P352684392128ChainID=PRO_0000215501;Note=60S ribosomal protein L22


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
all structure

check buttonExpression level of gene isoforms across TCGA pancancer
all structure

check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
LIHCRPL221.699447414806380.00235963995691637
BLCARPL22-1.663981064521750.002838134765625
UCECRPL22-1.259508711131250.046875
BRCARPL22-2.599805025112216.9057331042677e-19
KIRPRPL221.749654892334057.71600753068924e-06


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a
BLCARPL22210.02587706298748110.2110874149659860.166966753246753-0.273103727136922-0.113176788361561
READRPL22210.02668904704121890.2189154545454550.1818485-0.13873276238759-0.311428216932983

check buttonTranslation factor expression regulation through copy number variation of Translation factor
all structure
Cancer typeGeneCoefficientPvalue
UVMRPL22-0.1905754180.000919024
CESCRPL220.0861580150.000999362
LAMLRPL220.0380520730.009563394

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with RPL22 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
all structure
Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
DLBCCell metabolism geneRPL22PFDN50.8002579258.78E-12
DLBCCell metabolism geneRPL22POLR2F0.8119078562.52E-12
DLBCCell metabolism geneRPL22NME20.8168500141.45E-12
DLBCCell metabolism geneRPL22FAU0.8527746391.44E-14
DLBCCell metabolism geneRPL22SNRPD20.8672907661.55E-15
DLBCCGCRPL22NACA0.82122018.73E-13
DLBCEpifactorRPL22FBL0.867257661.56E-15
DLBCTFRPL22NME20.8168500141.45E-12
DLBCTSGRPL22PARK70.8097070373.21E-12
DLBCTSGRPL22GNB2L10.8192269321.10E-12
LAMLCell metabolism geneRPL22TIMM90.8284755056.44E-45
PRADCGCRPL22NACA0.8170194763.83E-133
THYMCell metabolism geneRPL22PFDN50.8034256958.55E-29
THYMCell metabolism geneRPL22FAU0.8451141891.97E-34
THYMEpifactorRPL22DMAP10.8042143076.89E-29
THYMIUPHARRPL22CSNK2B0.8018117921.33E-28
THYMTSGRPL22GLTSCR20.8250229511.58E-31
THYMTSGRPL22GNB2L10.8300815623.19E-32
UCSCell metabolism geneRPL22PFDN50.8034256958.55E-29
UCSCell metabolism geneRPL22FAU0.8451141891.97E-34
UCSEpifactorRPL22DMAP10.8042143076.89E-29
UCSIUPHARRPL22CSNK2B0.8018117921.33E-28
UCSTSGRPL22GLTSCR20.8250229511.58E-31
UCSTSGRPL22GNB2L10.8300815623.19E-32
UVMCell metabolism geneRPL22SEC11A0.8027116213.44E-19


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
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* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
KIRPRPL22RPL18A-1.516513928088850.00016188295558095
KICHRPL22RPS27A1.753966937859560.000187873840332031
KIRPRPL22RPS16-1.359570436175170.00019507110118866
COADRPL22RPS31.487303751430140.000411599874496461
KIRPRPL22RPS11-1.018615705651030.00105937570333481
LIHCRPL22RPL8-4.845882849745580.00110314154326131
PRADRPL22RPL18A1.406001757484990.00205137828390396
KICHRPL22RPL191.369011828940890.00250792503356934
KICHRPL22RPS121.269973817584310.00308787822723389
LUADRPL22RPL19-1.313980266157250.00993159558412698
THCARPL22RPS16-6.163227981565770.0115764821363307
BLCARPL22RPS12-1.478046734404210.0204124450683594
BLCARPL22RPS27A-1.047474700691880.0258216857910156
HNSCRPL22RPS3-4.735058190951350.0273726439852453
COADRPL22RPS111.353075489982040.0312207043170929
LUSCRPL22RPL19-2.146698895166660.044366810398747
KIRCRPL22RPL19-2.734852712766761.33980982873695e-10
BRCARPL22RPS12-4.912393274782441.85340619742495e-09
KIRPRPL22RPL37-1.174216219471392.26888805627823e-05
KIRCRPL22RPL35-1.064752380593922.72286325678163e-08
KIRCRPL22RPL8-1.182524599717735.64962994208288e-07
KIRPRPL22RPL8-1.530036923501196.0301274061203e-05
KIRCRPL22RPS16-1.661498698893847.8509870430991e-09
BRCARPL22RPS27A-4.285121482004247.8788217967112e-14
KIRCRPL22RPL37-2.871988220584648.03913394748564e-12
KIRPRPL22RPL35-1.529811019754969.0546440333128e-05
KIRCRPL22RPS3-1.295608479263879.05905681935088e-10
KIRCRPL22RPL18A-4.430793049608439.2516163152192e-11


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with RPL22
NSFL1C, CSE1L, CDC42, UBC, POU5F1, CD4, CALM1, EBNA-LP, MAPK14, RAD21, HDGF, ARRB1, ARRB2, NFX1, CUL3, CUL4A, CUL5, CUL2, CDK2, CUL1, COPS5, CAND1, PRAME, RPL15, RPL18, RPL19, RPL24, RPL37A, RPL14, RPS23, RPL11, RPL13, RPL4, RPS11, RPS13, RPS8, RPL6, RPL21, RPL27A, RPL5, RPL23A, RPS16, RPL7, RPL18A, RPS3A, RPL30, RPS26, RPS4X, RPS3, RPL7A, RPS6, RPS2, RPLP0, RPSA, RPS17, RPS24, RPS19, RPL23, RPL31, RPL12, RPL10A, RPS27A, RPS21, RPL17, ILF3, HNRNPM, RPS27L, RPL10L, STRAP, RPLP0P6, HSP90AA4P, DHX15, ESR1, SMURF1, VCAM1, FN1, IL7R, UBL4A, ITGA4, PAN2, CD81, IGSF8, ICAM1, SRPK2, TARDBP, PARK2, ARFGAP1, GTF3C4, HEXB, AURKA, CEP57, CEP76, TUBG1, VCP, HUWE1, PHF6, CCDC8, EED, RNF2, EGFR, LUZP4, WDR76, HNRNPU, LUC7L2, RPL10, RPL13A, ATP1B3, RPL38, RPL8, RPS12, RPS20, RPS5, RPL26, RPL26L1, RPL27, RPL3, RPL34, RPL35, RPL35A, RPL36, RPL9, RPLP2, RPS10, RPS14, RPS15, RPS15A, RPS18, RPS25, LOC101929876, RPS27, RPS7, RPS9, AHSA1, MYH9, NPM1, THOC5, NOP56, CBX8, Actb, Eif3a, Eif3e, Ktn1, Coro1c, Rpl35, Srp72, Rrbp1, Ccdc9, Flnb, MCM2, Ksr1, RC3H1, CDC73, NCL, CYLD, TRIM25, BMP4, PRPF8, PIH1D1, EFTUD2, CHD3, CHD4, TNF, SDCBP, SDCBP2, BAG4, FAM188B, MDM2, SPDL1, RIOK1, HEXIM1, MEPCE, LARP7, PPT1, HERC2, UBE3A, AGR2, RECQL4, REST, ZFP36L2, MYC, Prkab1, GRWD1, METTL14, KIAA1429, PSME3, EIF4B, RC3H2, PHB, RBX1, USP14, NR2C2, PPP1CC, AGRN, KRAS, DYNLT1, VRK1, HIST1H4A, SNRNP70, Dppa3, ITFG1, ARAF, HMGB1, BIRC3, STAU1, WWP2, RPL22, THAP1, DDIT4L, SURF6, ZCCHC10, AP2M1, FGF11, BEND7, STAC3, HIST1H2BN, CT45A1, ARIH2, PLEKHA4, PINK1, FANCD2, PTEN, HCVgp1, ZC3H18, FGFR1, HCK, MAPK1, PTPN6, H1FOO, M, nsp13, nsp4, nsp6, ORF3a, NEK4, DUX4, CIT, ANLN, AURKB, CHMP4B, ECT2, KIF14, KIF20A, KIF23, PRC1, INS, NINL, Apc2, RBM39, FBP1, LGALS9, RIN3, TOP3B, FBXL19, OGT, UFL1, DDRGK1, DHFRL1, TRIM37, SLC26A4-AS1, FZR1, WDR5, NUDCD2, CEBPZ, ZBTB24, SREK1, NIP7, DDX21, SNAPC1, VANGL2, NOC3L, NOC2L, BOP1, KNOP1, DDX24, WDR89, ZCCHC17, SRRM2, URB1, PRKRA, UBTF, DDX31, CENPB, RSBN1L, DDX27, NMNAT1, ZC3H10, GTPBP4, RRP1B, RPL32, DDX51, YBX1, ZNF48, GNL2, EPB41L5, SIN3B, DHX30, BBX, CWC22, BRIX1, TNRC18, SNAPC4, NAF1, RBM28, FTSJ3, VANGL1, NVL, SPRTN, BTF3, FBXW7, MRFAP1, CCNF, N,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
RPL22ACCchr162577856257785T-Frame_Shift_Delp.K15fs82
RPL22ACCchr162577856257785T-Frame_Shift_Delp.K16fs13
RPL22CESCchr162577856257785T-Frame_Shift_Del12
RPL22BLCAchr162577846257785-TFrame_Shift_Insp.K15fs8
RPL22LUADchr162530916253091GCMissense_Mutationp.I47M7
RPL22LIHCchr162468526246852T-Frame_Shift_Delp.K89fs6
RPL22BRCAchr162468316246831TGSilentp.L963
RPL22UCECchr162468176246817CTMissense_Mutationp.R101H2
RPL22KIRPchr162468736246873ATNonsense_Mutationp.Y82X2
RPL22SKCMchr162531076253107AGMissense_Mutationp.F42S2
RPL22UCECchr162468536246853TGMissense_Mutationp.K89T2
RPL22KIRPchr162468736246873ATNonsense_Mutationp.Y82*2
RPL22UCECchr162468556246855TGMissense_Mutationp.K88N2
RPL22UCECchr162577136257713ATMissense_Mutationp.F39Y2
RPL22UCECchr162577846257785-TFrame_Shift_Insp.K16fs2
RPL22ACCchr162468386246840TTC-In_Frame_Delp.94_94del2
RPL22STADchr162468186246818GAMissense_Mutationp.R101C2
RPL22HNSCchr162530656253065AGMissense_Mutationp.L56P2
RPL22STADchr162577856257786TT-Frame_Shift_Delp.15_15del2
RPL22KIRCchr162468626246862AGMissense_Mutationp.L86P2
RPL22BLCAchr162577846257785--Frame_Shift_Ins2
RPL22STADchr162530816253081CTMissense_Mutationp.G51R2
RPL22KIRCchr162468516246852-TFrame_Shift_Insp.Y90fs2
RPL22KIRCchr162468516246852-TFrame_Shift_Insp.F90fs2
RPL22SKCMchr162530666253066GAMissense_Mutationp.L56F2
RPL22SKCMchr162530096253009CANonsense_Mutationp.E75X1
RPL22COADchr162468516246851AGMissense_Mutationp.Y90H1
RPL22KIRPchr162468736246873ATNonsense_Mutation1
RPL22SKCMchr162530096253009CANonsense_Mutationp.E75*1
RPL22ESCAchr162530116253011GTMissense_Mutation1
RPL22LGGchr162578186257818TASplice_Site.1
RPL22SKCMchr162468336246833GASilentp.L96L1
RPL22HNSCchr162530656253065AGMissense_Mutation1
RPL22LIHCchr162530196253019GTSilent1
RPL22SKCMchr162529966252996GAMissense_Mutationp.S79F1
RPL22HNSCchr162530996253099CTMissense_Mutation1
RPL22LIHCchr162577546257754GTNonsense_Mutationp.C25X1
RPL22STADchr162468186246818GAMissense_Mutation1
RPL22HNSCchr162530996253099CTMissense_Mutationp.E45K1
RPL22LIHCchr162577546257754GTNonsense_Mutationp.C25*1
RPL22ACCchr162468386246840TTC-In_Frame_Delp.KN93del1
RPL22OVchr161694176169417GAMissense_Mutationp.R97C1
RPL22STADchr162577286257728ACMissense_Mutationp.M34R1

check buttonCopy number variation (CNV) of RPL22
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across RPL22
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
100420BRCATCGA-AN-A0FTACOT7chr16387358-RPL22chr16253114-
100420LGGTCGA-DU-A5TTACOT7chr16387358-RPL22chr16246876-
100420N/AN66339AFAP1L2chr10116109312-RPL22chr16245094+
100420STADTCGA-HU-A4HB-01AAHI1chr6135811761-RPL22chr16257816-
100420N/AFN138778DLG2chr1185189546+RPL22chr16246260-
100420N/ABU858788MAP3K2chr2128062363-RPL22chr16246465-
100420N/AAA420829MECOMchr3169201808+RPL22chr16246675+
100420N/AEC559899RADILchr74905334-RPL22chr16257817-
100420SKCMTCGA-D3-A3MV-06ARCC1chr128834672+RPL22chr16257816-
98723STADTCGA-BR-A452RPL22chr16252989-ACOT7chr16324755-
98723STADTCGA-BR-A4QI-01ARPL22chr16252990-ACOT7chr16324755-
76164N/ABM013571RPL22chr16246675-CPA2chr7129923133-
101264N/ACR738829RPL22chr16245384-DLC1chr812941285-
89764PRADTCGA-KK-A5A1-01ARPL22chr16257712-DNAJC11chr16714099-
100803N/ABF338721RPL22chr16246675-ERGchr2139818145+
101735ESCATCGA-2H-A9GKRPL22chr16252989-MECOMchr3169099312-
102124N/ABG574777RPL22chr16246675-MKL1chr2241006067-
84752N/ABF846664RPL22chr16246042+PCSK6chr15101871293-
98891COADTCGA-A6-2679-01ARPL22chr16257713-PDE6Achr5149246804-
95065HNSCTCGA-CV-7434RPL22chr16252989-PHF16chrX46844284+
84283N/ABF185866RPL22chr16246852-PPARGC1Achr423976453-
76164N/ABG576945RPL22chr16246677-PPP3CAchr4102197050-
94215SARCTCGA-DX-AB2X-01ARPL22chr16257712-PRDM16chr13342145+
101261OVTCGA-23-1118-01ARPL22chr16246763-PTMAchr2232576638+
97174LUSCTCGA-68-8251-01ARPL22chr16257712-RER1chr12327223+
101411N/ACD579559RPL22chr16246475-RFC3chr1334437089-
76164LIHCTCGA-EP-A2KARPL22chr16252989-RNF207chr16278348+
76164LIHCTCGA-EP-A2KA-01ARPL22chr16252990-RNF207chr16278349+
76164N/AEC516024RPL22chr16257713-RPL22P19chr12125420352-
92890ESCATCGA-VR-AA4DRPL22chr16252989-SLMAPchr357908615+
96490N/AAA879157RPL22chr16246675-STK10chr5171528473+
100932N/ABD309585RPL22chr16245165-SYNE1chr6152636356-
97100N/ABD264640RPL22chr16246397+TP53BP1chr1543785339-
76164LUSCTCGA-60-2703RPL22chr16252989-UBE2D3chr4103747793-
100420STADTCGA-HU-A4GH-01ATBL2chr772992750-RPL22chr16246876-
100420STADTCGA-D7-6527TXNL4Bchr1672122885-RPL22chr16257816-
100421KICHTCGA-KO-8404ZBTB38chr3141087646+RPL22chr16257816-


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
THYMRPL220.02029698467044090.57
SARCRPL220.02547454019552330.69

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
KICHRPL220.03619794544624991
GBMRPL220.02548655408563160.79
LGGRPL221.83116450201151e-076e-06
BRCARPL220.00166203195510770.053

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source