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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: RPS10 (NCBI Gene ID:6204)


Gene Summary

check button Gene Summary
Gene InformationGene Name: RPS10
Gene ID: 6204
Gene Symbol

RPS10

Gene ID

6204

Gene Nameribosomal protein S10
SynonymsDBA9|S10
Cytomap

6p21.31

Type of Geneprotein-coding
Description40S ribosomal protein S10small ribosomal subunit protein eS10
Modification date20200313
UniProtAcc

P46783


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0005840Ribosome
GO:0002181Cytoplasmic translation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25
RPS10>1119.25


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Translation Studies in PubMed

check button We searched PubMed using 'RPS10[title] AND translation [title] AND human.'
GeneTitlePMID
RPS10Cancer-Associated Eukaryotic Translation Initiation Factor 1A Mutants Impair Rps3 and Rps10 Binding and Enhance Scanning of Cell Cycle Genes30420357


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
all structure

check buttonExpression level of gene isoforms across TCGA pancancer
all structure

check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
STADRPS101.246051703622670.00608485564589501
PRADRPS101.224404983745910.0436765184075403
LIHCRPS10-4.193754581936490.0467480881450754
KIRCRPS10-1.40115289715149.77063509146009e-07


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through copy number variation of Translation factor
Cancer typeGeneCoefficientPvalue
LAMLRPS10-0.0226287280.003294005

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with RPS10 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
all structure
Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
CHOLCell metabolism geneRPS10PFDN50.8080979261.94E-11
CHOLCGCRPS10NACA0.8356583949.26E-13
CHOLTSGRPS10GLTSCR20.8234736963.79E-12
CHOLTSGRPS10GNB2L10.8497377771.57E-13
DLBCCell metabolism geneRPS10POLR2J0.8003928638.66E-12
DLBCCell metabolism geneRPS10LSM20.8136174632.09E-12
DLBCCell metabolism geneRPS10PSMB30.814379251.91E-12
DLBCCell metabolism geneRPS10PTDSS20.8208343639.14E-13
DLBCCell metabolism geneRPS10GEMIN70.8301286662.98E-13
DLBCCell metabolism geneRPS10TIMM90.8314275382.54E-13
DLBCCell metabolism geneRPS10POLR2F0.8340001251.84E-13
DLBCCell metabolism geneRPS10PFDN50.8403460968.05E-14
DLBCCell metabolism geneRPS10TIMM130.8494180142.32E-14
DLBCCell metabolism geneRPS10TOMM220.8546652641.09E-14
DLBCCell metabolism geneRPS10SNRPD20.8619507173.63E-15
DLBCCell metabolism geneRPS10NME20.8704579899.24E-16
DLBCCell metabolism geneRPS10FAU0.8712587488.09E-16
DLBCCGCRPS10NACA0.8076040184.04E-12
DLBCEpifactorRPS10FBL0.8498233192.19E-14
DLBCIUPHARRPS10MFSD2B0.8333999971.98E-13
DLBCTFRPS10THAP40.8087459013.57E-12
DLBCTFRPS10NME20.8704579899.24E-16
DLBCTSGRPS10GLTSCR20.803675686.14E-12
DLBCTSGRPS10GADD45GIP10.8532260181.35E-14
DLBCTSGRPS10GNB2L10.889571872.91E-17
GBMCell metabolism geneRPS10SSR20.8114937761.63E-41
GBMCell metabolism geneRPS10SNRPG0.8159084352.65E-42
GBMCell metabolism geneRPS10SNRPD20.821510852.48E-43
GBMCell metabolism geneRPS10CCT40.8231490321.22E-43
GBMCell metabolism geneRPS10LSM20.8258870673.66E-44
GBMCell metabolism geneRPS10PFDN50.8305094.59E-45
GBMCell metabolism geneRPS10ZNRD10.8346752246.68E-46
GBMCell metabolism geneRPS10FAU0.8614525936.66E-52
KICHTSGRPS10GAS50.8106619292.12E-22
LGGCell metabolism geneRPS10LSM20.805784833.16E-122
LGGCell metabolism geneRPS10FAU0.8513297474.93E-150
LIHCCell metabolism geneRPS10ZNRD10.8077024211.21E-98
LIHCCell metabolism geneRPS10LSM20.8091277282.98E-99
PCPGEpifactorRPS10FBL0.8003065155.84E-43
PCPGTSGRPS10GNB2L10.8246329751.19E-47
PRADCell metabolism geneRPS10PFDN50.8042749945.82E-126
PRADCell metabolism geneRPS10ZNRD10.8044085184.92E-126
PRADCell metabolism geneRPS10POLR2F0.8129893558.19E-131
PRADCell metabolism geneRPS10POLR2I0.8154950962.96E-132
PRADCell metabolism geneRPS10TIMM130.8193338671.65E-134
PRADCell metabolism geneRPS10TIMM90.8219455424.52E-136
PRADCell metabolism geneRPS10NME20.8343744687.03E-144
PRADCell metabolism geneRPS10PSMB70.8410698842.33E-148
PRADCell metabolism geneRPS10TOMM70.8475712996.50E-153
PRADCell metabolism geneRPS10FAU0.8563996831.89E-159
PRADCell metabolism geneRPS10SNRPD20.865353431.52E-166
PRADEpifactorRPS10FBL0.8677920511.45E-168
PRADTFRPS10ZNF5240.804206436.34E-126
PRADTFRPS10NME20.8343744687.03E-144
PRADTSGRPS10GAS50.8080646474.85E-128
PRADTSGRPS10GNB2L10.8434020045.72E-150
READCell metabolism geneRPS10LSM20.8578197581.53E-31
TGCTEpifactorRPS10FBL0.8356850236.37E-42
THCACell metabolism geneRPS10PFDN50.8366764573.71E-151
THCACell metabolism geneRPS10FAU0.8467178952.43E-158
THCACell metabolism geneRPS10SNRPD20.8564416148.28E-166
THCAEpifactorRPS10FBL0.8480489312.48E-159
THCATSGRPS10GNB2L10.817746127.42E-139
THYMCell metabolism geneRPS10APRT0.8023361291.15E-28
THYMCell metabolism geneRPS10TOMM220.8028328721.01E-28
THYMCell metabolism geneRPS10IMPDH20.8031898359.12E-29
THYMCell metabolism geneRPS10EXOSC40.8045550156.28E-29
THYMCell metabolism geneRPS10PSMB30.8081738632.30E-29
THYMCell metabolism geneRPS10ACOT80.8105790311.16E-29
THYMCell metabolism geneRPS10MVD0.8107373121.11E-29
THYMCell metabolism geneRPS10PSMB10.8130241895.77E-30
THYMCell metabolism geneRPS10SMPD20.8148182083.42E-30
THYMCell metabolism geneRPS10POLD20.8157686522.59E-30
THYMCell metabolism geneRPS10DPM20.8264912799.97E-32
THYMCell metabolism geneRPS10PSMD130.8290042554.50E-32
THYMCell metabolism geneRPS10TALDO10.8376124882.66E-33
THYMCell metabolism geneRPS10FPGS0.8391224871.59E-33
THYMCell metabolism geneRPS10PGLS0.8421079845.69E-34
THYMCell metabolism geneRPS10TIMM8B0.8427617294.53E-34
THYMCell metabolism geneRPS10PSMC30.8435131143.48E-34
THYMCell metabolism geneRPS10PSMB70.8457013221.60E-34
THYMCell metabolism geneRPS10PFDN50.8546982145.77E-36
THYMCell metabolism geneRPS10TIMM130.8715174696.06E-39
THYMCell metabolism geneRPS10SSR20.8739330792.09E-39
THYMCell metabolism geneRPS10SLC27A50.8754538731.06E-39
THYMCell metabolism geneRPS10LSM20.876527316.50E-40
THYMCell metabolism geneRPS10SNRPD20.8787871222.30E-40
THYMCell metabolism geneRPS10FAU0.8899653559.78E-43
THYMCGCRPS10RBM100.8073728632.87E-29
THYMCGCRPS10SDHAF20.8379450022.38E-33
THYMCGCRPS10TFPT0.8398078931.26E-33
THYMEpifactorRPS10SIRT60.8012816241.53E-28
THYMEpifactorRPS10EXOSC40.8045550156.28E-29
THYMEpifactorRPS10RUVBL20.8052556495.17E-29
THYMEpifactorRPS10PPP4C0.8151474073.11E-30
THYMEpifactorRPS10DMAP10.8168982741.86E-30
THYMEpifactorRPS10CXXC10.8181729161.27E-30
THYMEpifactorRPS10RRP80.8218814654.16E-31
THYMEpifactorRPS10TAF100.8310588462.33E-32
THYMEpifactorRPS10PRPF310.8328439681.30E-32
THYMEpifactorRPS10TFPT0.8398078931.26E-33
THYMEpifactorRPS10NOC2L0.841461747.12E-34
THYMEpifactorRPS10MBD30.8448810982.14E-34
THYMEpifactorRPS10BRMS10.8460042561.44E-34
THYMEpifactorRPS10C17orf490.8477995237.52E-35
THYMEpifactorRPS10FBL0.919961421.24E-50
THYMIUPHARRPS10SIRT60.8012816241.53E-28
THYMIUPHARRPS10IMPDH20.8031898359.12E-29
THYMIUPHARRPS10MVD0.8107373121.11E-29
THYMIUPHARRPS10PSMB10.8130241895.77E-30
THYMIUPHARRPS10SMPD20.8148182083.42E-30
THYMIUPHARRPS10EGLN20.8230735792.88E-31
THYMIUPHARRPS10MFSD2B0.8251537541.52E-31
THYMIUPHARRPS10SLC27A50.8754538731.06E-39
THYMTFRPS10CXXC10.8181729161.27E-30
THYMTFRPS10ZNF4280.8183478271.21E-30
THYMTFRPS10THAP30.8206015476.13E-31
THYMTFRPS10ZNF5810.8264590661.01E-31
THYMTFRPS10REXO40.8271666228.06E-32
THYMTFRPS10MBD30.8448810982.14E-34
THYMTSGRPS10SIRT60.8012816241.53E-28
THYMTSGRPS10BRMS10.8460042561.44E-34
THYMTSGRPS10TSSC40.865973516.43E-38
THYMTSGRPS10GLTSCR20.8712265026.88E-39
THYMTSGRPS10GNB2L10.894463249.17E-44
UCSCell metabolism geneRPS10APRT0.8023361291.15E-28
UCSCell metabolism geneRPS10TOMM220.8028328721.01E-28
UCSCell metabolism geneRPS10IMPDH20.8031898359.12E-29
UCSCell metabolism geneRPS10EXOSC40.8045550156.28E-29
UCSCell metabolism geneRPS10PSMB30.8081738632.30E-29
UCSCell metabolism geneRPS10ACOT80.8105790311.16E-29
UCSCell metabolism geneRPS10MVD0.8107373121.11E-29
UCSCell metabolism geneRPS10PSMB10.8130241895.77E-30
UCSCell metabolism geneRPS10SMPD20.8148182083.42E-30
UCSCell metabolism geneRPS10POLD20.8157686522.59E-30
UCSCell metabolism geneRPS10DPM20.8264912799.97E-32
UCSCell metabolism geneRPS10PSMD130.8290042554.50E-32
UCSCell metabolism geneRPS10TALDO10.8376124882.66E-33
UCSCell metabolism geneRPS10FPGS0.8391224871.59E-33
UCSCell metabolism geneRPS10PGLS0.8421079845.69E-34
UCSCell metabolism geneRPS10TIMM8B0.8427617294.53E-34
UCSCell metabolism geneRPS10PSMC30.8435131143.48E-34
UCSCell metabolism geneRPS10PSMB70.8457013221.60E-34
UCSCell metabolism geneRPS10PFDN50.8546982145.77E-36
UCSCell metabolism geneRPS10TIMM130.8715174696.06E-39
UCSCell metabolism geneRPS10SSR20.8739330792.09E-39
UCSCell metabolism geneRPS10SLC27A50.8754538731.06E-39
UCSCell metabolism geneRPS10LSM20.876527316.50E-40
UCSCell metabolism geneRPS10SNRPD20.8787871222.30E-40
UCSCell metabolism geneRPS10FAU0.8899653559.78E-43
UCSCGCRPS10RBM100.8073728632.87E-29
UCSCGCRPS10SDHAF20.8379450022.38E-33
UCSCGCRPS10TFPT0.8398078931.26E-33
UCSEpifactorRPS10SIRT60.8012816241.53E-28
UCSEpifactorRPS10EXOSC40.8045550156.28E-29
UCSEpifactorRPS10RUVBL20.8052556495.17E-29
UCSEpifactorRPS10PPP4C0.8151474073.11E-30
UCSEpifactorRPS10DMAP10.8168982741.86E-30
UCSEpifactorRPS10CXXC10.8181729161.27E-30
UCSEpifactorRPS10RRP80.8218814654.16E-31
UCSEpifactorRPS10TAF100.8310588462.33E-32
UCSEpifactorRPS10PRPF310.8328439681.30E-32
UCSEpifactorRPS10TFPT0.8398078931.26E-33
UCSEpifactorRPS10NOC2L0.841461747.12E-34
UCSEpifactorRPS10MBD30.8448810982.14E-34
UCSEpifactorRPS10BRMS10.8460042561.44E-34
UCSEpifactorRPS10C17orf490.8477995237.52E-35
UCSEpifactorRPS10FBL0.919961421.24E-50
UCSIUPHARRPS10SIRT60.8012816241.53E-28
UCSIUPHARRPS10IMPDH20.8031898359.12E-29
UCSIUPHARRPS10MVD0.8107373121.11E-29
UCSIUPHARRPS10PSMB10.8130241895.77E-30
UCSIUPHARRPS10SMPD20.8148182083.42E-30
UCSIUPHARRPS10EGLN20.8230735792.88E-31
UCSIUPHARRPS10MFSD2B0.8251537541.52E-31
UCSIUPHARRPS10SLC27A50.8754538731.06E-39
UCSTFRPS10CXXC10.8181729161.27E-30
UCSTFRPS10ZNF4280.8183478271.21E-30
UCSTFRPS10THAP30.8206015476.13E-31
UCSTFRPS10ZNF5810.8264590661.01E-31
UCSTFRPS10REXO40.8271666228.06E-32
UCSTFRPS10MBD30.8448810982.14E-34
UCSTSGRPS10SIRT60.8012816241.53E-28
UCSTSGRPS10BRMS10.8460042561.44E-34
UCSTSGRPS10TSSC40.865973516.43E-38
UCSTSGRPS10GLTSCR20.8712265026.88E-39
UCSTSGRPS10GNB2L10.894463249.17E-44
UVMCell metabolism geneRPS10GMDS0.8161422092.90E-20


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
check button
* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
KIRPRPS10RPL18A-1.516513928088850.00016188295558095
KICHRPS10RPS27A1.753966937859560.000187873840332031
KIRPRPS10RPS16-1.359570436175170.00019507110118866
STADRPS10RPS231.850767606645760.000364991836249828
COADRPS10RPS31.487303751430140.000411599874496461
KIRPRPS10RPS11-1.018615705651030.00105937570333481
LIHCRPS10RPL8-4.845882849745580.00110314154326131
PRADRPS10RPL18A1.406001757484990.00205137828390396
KICHRPS10RPL191.369011828940890.00250792503356934
KICHRPS10RPS121.269973817584310.00308787822723389
LUADRPS10RPL19-1.313980266157250.00993159558412698
THCARPS10RPS16-6.163227981565770.0115764821363307
LUSCRPS10RPS231.467511698910470.0174932185880974
BLCARPS10RPS12-1.478046734404210.0204124450683594
BLCARPS10RPS27A-1.047474700691880.0258216857910156
HNSCRPS10RPS3-4.735058190951350.0273726439852453
COADRPS10RPS111.353075489982040.0312207043170929
LUSCRPS10RPL19-2.146698895166660.044366810398747
UCECRPS10RPS23-2.036581598140070.046875
KIRCRPS10RPL19-2.734852712766761.33980982873695e-10
BRCARPS10RPS12-4.912393274782441.85340619742495e-09
KIRCRPS10RPL35-1.064752380593922.72286325678163e-08
KIRCRPS10RPL8-1.182524599717735.64962994208288e-07
KIRPRPS10RPL8-1.530036923501196.0301274061203e-05
KIRCRPS10RPS16-1.661498698893847.8509870430991e-09
BRCARPS10RPS27A-4.285121482004247.8788217967112e-14
KIRPRPS10RPL35-1.529811019754969.0546440333128e-05
KIRCRPS10RPS3-1.295608479263879.05905681935088e-10
KIRCRPS10RPL18A-4.430793049608439.2516163152192e-11


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with RPS10
PINX1, HAP1, HIP1, KAT7, PFN2, PTTG1, H2AFX, CD4, DCC, MME, WIZ, DVL3, TCF25, EED, XRCC6, DNMT3B, DMPK, RAD21, SIRT7, SYK, TP53, CUL3, CUL5, CDK2, CUL1, COPS5, DCUN1D1, CAND1, NEDD8, PIK3R2, RPS4X, APP, RPL10, RPL27, RPL31, RPL9, RPS13, RPS15A, RPS3, RPS24, RPS14, RPS26, RPS2, RPSA, RPS7, RPS16, RPL14, RPS25, RPS11, RPLP1, RPS19, RPS8, RPL5, RPLP0, RPS3A, RPL11, RPS27A, RPS29, MOV10, RPLP0P6, RPL10L, PRPF3, PRPF4, UQCRB, PRPF19, TMCO1, ATP5O, SMURF1, FN1, VCAM1, UBL4A, ITGA4, PAN2, RAD52, FBXO25, FBXO6, EIF3A, EIF3E, EIF3K, LARP1, EIF2A, RPL28, RPS15, RPS18, RPS20, RPS21, RPS28, RPS5, RPS9, RPS12, RPS17, RPS23, RPS27, RPS6, SERBP1, TSR1, WIBG, ASB10, AURKA, CEP250, TUBG1, TUBGCP3, HUWE1, CUL7, RNF2, FBXW11, NRDE2, RPL10A, RPL12, RPL13, RPL13A, RPL15, RPL23, RPL27A, RPL3, RPL30, RPL35, RPL36, RPL37A, RPL38, RPL4, RPL7, RPL7A, RPL8, RPLP2, BCAS2, RAP2C, RPL18, RPL18A, RPL19, RPL21, RPL22, RPL23A, RPL24, RPL35A, RPL6, TMED2, LOC101929876, RRP7A, TOMM22, BTRC, MED20, EWSR1, XPO1, HIST1H3E, AHSA1, CBR3, HNRNPU, NPM1, EXOSC4, CAMKK1, Eif3a, Eif3e, Rab5c, Rpl35, Srp72, GAN, TRIM29, MCM2, Ksr1, Mdm2, RC3H1, EIF2S2, CDC73, RRS1, HIST1H1E, HIST1H1A, HIST1H1T, CHEK2, CHEK1, NCL, CYLD, TRIM25, HEY1, ZNF598, WDR77, CTNNB1, TGFB1, PYHIN1, PRPF8, EFTUD2, AAR2, PIH1D1, NFKB1, RNF4, CHD3, CHD4, RNF31, TNF, RIOK1, HEXIM1, MEPCE, LARP7, RNF123, SNAI1, AGR2, RECQL4, DCPS, REST, ZFP36L2, MYC, CDK9, Prkaa1, Prkab1, KIAA1429, EIF4B, RC3H2, ACTC1, PHB, USP14, PPP1CC, VRK3, HIST1H4A, SNRNP70, ITFG1, HMGB1, BIRC3, NFX1, WWP2, TRIM28, LRRK2, CMTR1, ARIH2, PLEKHA4, YAP1, TFCP2, FANCD2, HCVgp1, ZC3H18, BCAP31, LARS, MAP7D3, nsp1, ORF8, TOP3B, USP10, DUX4, CIT, ANLN, AURKB, CHMP4B, CHMP4C, ECT2, KIF14, KIF20A, KIF23, PRC1, FASN, LRRC59, BRD4, RBM45, Apc2, RBM39, FBP1, MKRN1, N, DNAJB1, DNAJC2, SEC63, BAG5, SPOP, PARK2, UFL1, DDRGK1, ATG10, UBQLN1, FZR1, WDR5, LIN28B, HIST1H1C, YBX2, THAP3, ZC3H8, SSB, RPS26P11, RSL1D1, GNL2, YBX1, ZNF629, ABT1, ZBTB24, ZFR, H2AFB3, NGDN, RSBN1L, DDX55, SREK1, SRSF5, FAM120A, ZCRB1, GLE1, RSBN1, SURF6, ZNF184, HIST1H2AM, CLTCL1, PURA, ZNF354A, CHCHD4, GLYR1, NSA2, DHX57, NOL10, ZNF70, BAZ1B, NIFK, ZNF668, SRSF6, PRR3, ZNF771, DDX27, POP1, SRSF12, ZNF646, ZNF384, YBX3, DDX21, ZNF777, KRI1, H2AFB2, LIN28A, RPL26L1, RPF1, HP1BP3, H1FX, DDX10, ZSCAN25, ZC3HAV1, FARS2, CTCF, DKC1, PURB, SRSF1, REXO4, RBM19, ZNF358, MAGEB2, NAT10, PRDM15, ZNF768, SCAF1, TOE1, RPL36AL, AATF, GLI4, SF3B2, ADARB1, MRPL2, SF3B1, ZNF574, SRSF4, H1FNT, ZBTB11, ZNF48, ZNF800, BMS1, CCDC86, HIST1H1B, HIST1H1D, MCEE, PRDM10, KRR1, ZNF346, DDX50, HERC5, DHX36, DDX31, NKRF, OASL, RTCA, HIST2H2AB, RPL17, SRPK2, HELZ2, DDX18, GLTSCR2, FGFBP1, UTP23, CCDC137, CCDC59, EPB41L4B, IMP4, WHSC1, YTHDC2, GTPBP4, METTL17, MAP7D1, ASCC3, RBM17, GAR1, CUEDC1, FAM111A, NOM1, HIST2H2AC, DDX54, SPATS2, ZNF22, DHX30, ASCC2, CHERP, RBM14-RBM4, U2SURP, UTP3, RPS4Y2, KNOP1, PRKRIR, NOP16, TRIP4, RPSAP58, CBX6, DHX37, APOBEC3D, DDX24, RIOK3, SNRPA1, LTV1, HIST1H2AE, TTF1, RRP15, STAU1, PPAN-P2RY11, SPATS2L, STAU2, ZNF121, ZFP91, RPL7L1, SDAD1, ZNF770, YTHDF1, ZCCHC6, PURG, NOL12, DDX56, FAM111B, LUC7L, LARP1B, MPHOSPH10, RSL24D1, PAK1IP1, ZNF512, IMP3, H2AFY, CDC5L, EPB41L5, MYBBP1A, RRP12, SPRTN, BTF3, FBXW7, E, ORF7b, S, nsp4, ORF10, ORF6, RCHY1, SLFN11, nsp14, CPEB1, KLF15, KLF16, KLF4, KLF8, SP1, TLX1,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo
RPS10chr634385135CTsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634385240TCsingle_nucleotide_variantBenignDiamond-Blackfan_anemia_9SO:0001624|3_prime_UTR_variant,SO:0001627|intron_variantSO:0001624|3_prime_UTR_variant,SO:0001627|intron_variant
RPS10chr634385258CAsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemia_9SO:0001624|3_prime_UTR_variant,SO:0001627|intron_variantSO:0001624|3_prime_UTR_variant,SO:0001627|intron_variant
RPS10chr634385330AGsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634385498AGsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634385517ATsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634385919GGTDuplicationBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634386139TACTCTDeletionUncertain_significanceDiamond-Blackfan_anemiaSO:0001575|splice_donor_variantSO:0001575|splice_donor_variant
RPS10chr634386165GAsingle_nucleotide_variantBenignDiamond-Blackfan_anemia_9SO:0001583|missense_variantSO:0001583|missense_variant
RPS10chr634386170ACsingle_nucleotide_variantBenignDiamond-Blackfan_anemia_9SO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634386194GAsingle_nucleotide_variantBenign/Likely_benignDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_9|not_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634386194GTsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634386203TCsingle_nucleotide_variantLikely_pathogenicDiamond-Blackfan_anemiaSO:0001574|splice_acceptor_variantSO:0001574|splice_acceptor_variant
RPS10chr634386210TCsingle_nucleotide_variantBenignDiamond-Blackfan_anemiaSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634386219GAsingle_nucleotide_variantBenignnot_specifiedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634386403ATsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634389213GAsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634389214ACADeletionBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634389217CAsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634389219CAsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634389224TCsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634389360TCsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634389507GAsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001583|missense_variantSO:0001583|missense_variant
RPS10chr634389543CTsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemia_9SO:0001583|missense_variantSO:0001583|missense_variant
RPS10chr634389570GAsingle_nucleotide_variantPathogenicDiamond-Blackfan_anemia_9SO:0001587|nonsenseSO:0001587|nonsense
RPS10chr634389689CTCDeletionLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634389796GGADuplicationLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634389796GAGDeletionBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634389796GAAGDeletionLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634389796GAAAGDeletionLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634392137CTsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634392160CTsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634392441CCATADuplicationUncertain_significanceDiamond-Blackfan_anemia_9SO:0001575|splice_donor_variantSO:0001575|splice_donor_variant
RPS10chr634392453CCCGAGGCCTGCCAGTCTCTGGADuplicationUncertain_significanceDiamond-Blackfan_anemiaSO:0001821|inframe_insertionSO:0001821|inframe_insertion
RPS10chr634392471TCsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634392475CGGCTACGGCDeletionPathogenicDiamond-Blackfan_anemiaSO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPS10chr634392507CCGDuplicationPathogenicDiamond-Blackfan_anemia_9SO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPS10chr634392507CTsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634392537CTsingle_nucleotide_variantBenignDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_9SO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634392546CTsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634392564GAsingle_nucleotide_variantBenignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634392567GAsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634392582AGsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634392600GAsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemia_9SO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634392653ACsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634392839ACADeletionLikely_benignDiamond-Blackfan_anemiaSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634392840CTsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634392864GAsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634392888GCsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_9SO:0001583|missense_variantSO:0001583|missense_variant
RPS10chr634392896GAsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634392910GAsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemia_9SO:0001583|missense_variantSO:0001583|missense_variant
RPS10chr634392928TCsingle_nucleotide_variantConflicting_interpretations_of_pathogenicityDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_9SO:0001583|missense_variantSO:0001583|missense_variant
RPS10chr634392959GAsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_9SO:0001583|missense_variantSO:0001583|missense_variant
RPS10chr634392993CTsingle_nucleotide_variantBenign/Likely_benignDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_9SO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPS10chr634392996CTsingle_nucleotide_variantPathogenicDiamond-Blackfan_anemia_9SO:0001582|initiatior_codon_variant,SO:0001583|missense_variantSO:0001582|initiatior_codon_variant,SO:0001583|missense_variant
RPS10chr634392998TCsingle_nucleotide_variantPathogenicDiamond-Blackfan_anemiaSO:0001582|initiatior_codon_variant,SO:0001583|missense_variantSO:0001582|initiatior_codon_variant,SO:0001583|missense_variant
RPS10chr634393001GCsingle_nucleotide_variantBenignDiamond-Blackfan_anemia_9SO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634393016TCsingle_nucleotide_variantLikely_benignnot_specifiedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634393212CTsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634393276GAsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPS10chr634393591TGsingle_nucleotide_variantBenignDiamond-Blackfan_anemiaSO:0001623|5_prime_UTR_variant,SO:0001627|intron_variantSO:0001623|5_prime_UTR_variant,SO:0001627|intron_variant
RPS10chr634393817CGsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemia_9SO:0001623|5_prime_UTR_variantSO:0001623|5_prime_UTR_variant
RPS10chr634393822GAsingle_nucleotide_variantBenignDiamond-Blackfan_anemia_9SO:0001623|5_prime_UTR_variantSO:0001623|5_prime_UTR_variant
RPS10chr634393829GCsingle_nucleotide_variantBenignDiamond-Blackfan_anemia_9SO:0001623|5_prime_UTR_variantSO:0001623|5_prime_UTR_variant
RPS10chr634393835GTsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemia_9SO:0001623|5_prime_UTR_variantSO:0001623|5_prime_UTR_variant
RPS10chr634393837GAsingle_nucleotide_variantBenignDiamond-Blackfan_anemia_9SO:0001623|5_prime_UTR_variantSO:0001623|5_prime_UTR_variant
RPS10chr634393839TGTDeletionUncertain_significanceDiamond-Blackfan_anemiaSO:0001623|5_prime_UTR_variantSO:0001623|5_prime_UTR_variant
RPS10chr634393844AGGADeletionUncertain_significanceDiamond-Blackfan_anemiaSO:0001623|5_prime_UTR_variantSO:0001623|5_prime_UTR_variant
RPS10chr634393845GAsingle_nucleotide_variantBenignDiamond-Blackfan_anemia_9|not_specifiedSO:0001623|5_prime_UTR_variantSO:0001623|5_prime_UTR_variant
RPS10chr634393851ACsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemia
RPS10chr634393855TCsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemia
RPS10chr634393866GAsingle_nucleotide_variantBenignDiamond-Blackfan_anemia
RPS10chr634393906AGsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemia


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
RPS10CHOLchr63439248434392484CGMissense_Mutationp.R95P4
RPS10BRCAchr63438955934389559TAMissense_Mutationp.R116S3
RPS10ESCAchr63438956334389563GAMissense_Mutation2
RPS10CESCchr63438618834386188CGMissense_Mutation2
RPS10LAMLchr63450048534500485CTSilentp.P872
RPS10UCECchr63439248334392483GASilentp.R952
RPS10UCECchr63439297334392973AGMissense_Mutationp.I9T2
RPS10LIHCchr63438953934389539TCMissense_Mutation2
RPS10ESCAchr63438956334389563GAMissense_Mutationp.A115V2
RPS10ESCAchr63439381434393814CTRNANULL1
RPS10LIHCchr63438562934385629T-Frame_Shift_Delp.R168fs1
RPS10LUADchr63438529034385290GTMissense_Mutationp.P164H1
RPS10GBMchr63439245434392454CTMissense_Mutation1
RPS10OVchr63450085134500851GTMissense_Mutationp.N42K1
RPS10HNSCchr63439261634392616GAMissense_Mutation1
RPS10OVchr63450097734500977CASplice_Sitee1-11
RPS10BLCAchr63439289934392899CGMissense_Mutation1
RPS10HNSCchr63439246334392463CTMissense_Mutationp.G102D1
RPS10READchr63438956734389567GAMissense_Mutationp.P114S1
RPS10KIRPchr63439260534392605GTMissense_Mutation1
RPS10SARCchr63438617734386177GTMissense_Mutation1
RPS10KIRPchr63438528834385288GTMissense_Mutation1
RPS10SARCchr63439247734392477GTMissense_Mutation1
RPS10CESCchr63438618834386188CGMissense_Mutationp.K138N1
RPS10LGGchr63439260234392602CAMissense_Mutation1
RPS10COADchr63439248434392484CTMissense_Mutationp.R95H1
RPS10LIHCchr63438953934389539TCMissense_Mutationp.D123G1

check buttonCopy number variation (CNV) of RPS10
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across RPS10
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
58300Non-Cancer61NNDUFV3chr2144317157+RPS10chr634389584-
84446UCECTCGA-5B-A90CRPS10chr634392446-CUEDC1chr1755963240-
77291HNSCTCGA-P3-A6SX-01ARPS10chr634392446-ITPR3chr633623543+
102786STADTCGA-D7-5577-01ARPS10chr634392446-PKMchr1572492996-


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
KIRCRPS100.00824083946925880.23
BRCARPS100.01979448942592780.53
MESORPS100.02234987775404240.58

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
LUSCRPS100.01462315326307240.45
LGGRPS100.002868755743687330.095
BRCARPS100.003569051836348060.11
PAADRPS100.03762918653382431

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source
C2750081Diamond-Blackfan Anemia 96CLINGEN;CTD_human;GENOMICS_ENGLAND
C1260899Anemia, Diamond-Blackfan4GENOMICS_ENGLAND
C2931850Aase Smith syndrome 21GENOMICS_ENGLAND