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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:CSF2RA-TCF4 (FusionGDB2 ID:HG1438TG6925)

Fusion Gene Summary for CSF2RA-TCF4

check button Fusion gene summary
Fusion gene informationFusion gene name: CSF2RA-TCF4
Fusion gene ID: hg1438tg6925
HgeneTgene
Gene symbol

CSF2RA

TCF4

Gene ID

1438

6925

Gene namecolony stimulating factor 2 receptor subunit alphatranscription factor 4
SynonymsCD116|CDw116|CSF2R|CSF2RAX|CSF2RAY|CSF2RX|CSF2RY|GM-CSF-R-alpha|GMCSFR|GMCSFR-alpha|GMR|GMR-alpha|SMDP4|alphaGMRE2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19
Cytomap('CSF2RA')('TCF4')

Xp22.33 and Yp11.2

18q21.2

Type of geneprotein-codingprotein-coding
Descriptiongranulocyte-macrophage colony-stimulating factor receptor subunit alphaCD116 antigenGM-CSF receptor alpha subunitalpha-GM-CSF receptorcolony stimulating factor 2 receptor alpha subunitcolony stimulating factor 2 receptor, alpha, low-affinity (granulotranscription factor 4SL3-3 enhancer factor 2class B basic helix-loop-helix protein 19immunoglobulin transcription factor 2
Modification date2020032620200329
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000355432, ENST00000355805, 
ENST00000361536, ENST00000381500, 
ENST00000381509, ENST00000381524, 
ENST00000381529, ENST00000417535, 
ENST00000432318, ENST00000494969, 
ENST00000498153, ENST00000501036, 
ENST00000355432, ENST00000355805, 
ENST00000361536, ENST00000381500, 
ENST00000381509, ENST00000381524, 
ENST00000381529, ENST00000417535, 
ENST00000432318, ENST00000494969, 
ENST00000498153, ENST00000501036, 
Fusion gene scores* DoF score4 X 4 X 1=1611 X 10 X 4=440
# samples 411
** MAII scorelog2(4/16*10)=1.32192809488736
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(11/440*10)=-2
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CSF2RA [Title/Abstract] AND TCF4 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCSF2RA(1435211)-TCF4(53037568), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneTCF4

GO:0045893

positive regulation of transcription, DNA-templated

2105528|12651860



check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/ACB051441CSF2RAchrX

1435211

+TCF4chr18

53037568

+


Top

Fusion Gene ORF analysis for CSF2RA-TCF4

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000355432ENST00000354452CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000356073CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000398339CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000457482CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000537578CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000537856CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000540999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000543082CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000544241CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000561831CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000561992CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000563760CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000564228CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000564403CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000564999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000565018CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000566279CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000566286CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000567880CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000568673CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000568740CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000570177CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355432ENST00000570287CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000354452CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000356073CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000398339CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000457482CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000537578CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000537856CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000540999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000543082CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000544241CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000561831CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000561992CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000563760CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000564228CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000564403CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000564999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000565018CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000566279CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000566286CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000567880CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000568673CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000568740CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000570177CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000355805ENST00000570287CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000354452CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000356073CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000398339CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000457482CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000537578CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000537856CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000540999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000543082CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000544241CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000561831CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000561992CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000563760CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000564228CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000564403CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000564999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000565018CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000566279CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000566286CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000567880CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000568673CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000568740CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000570177CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000361536ENST00000570287CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000354452CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000356073CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000398339CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000457482CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000537578CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000537856CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000540999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000543082CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000544241CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000561831CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000561992CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000563760CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000564228CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000564403CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000564999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000565018CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000566279CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000566286CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000567880CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000568673CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000568740CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000570177CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381500ENST00000570287CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000354452CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000356073CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000398339CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000457482CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000537578CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000537856CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000540999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000543082CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000544241CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000561831CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000561992CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000563760CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000564228CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000564403CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000564999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000565018CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000566279CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000566286CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000567880CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000568673CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000568740CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000570177CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381509ENST00000570287CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000354452CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000356073CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000398339CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000457482CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000537578CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000537856CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000540999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000543082CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000544241CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000561831CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000561992CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000563760CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000564228CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000564403CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000564999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000565018CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000566279CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000566286CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000567880CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000568673CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000568740CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000570177CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381524ENST00000570287CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000354452CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000356073CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000398339CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000457482CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000537578CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000537856CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000540999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000543082CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000544241CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000561831CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000561992CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000563760CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000564228CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000564403CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000564999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000565018CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000566279CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000566286CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000567880CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000568673CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000568740CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000570177CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000381529ENST00000570287CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000354452CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000356073CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000398339CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000457482CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000537578CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000537856CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000540999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000543082CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000544241CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000561831CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000561992CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000563760CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000564228CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000564403CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000564999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000565018CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000566279CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000566286CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000567880CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000568673CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000568740CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000570177CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000417535ENST00000570287CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000354452CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000356073CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000398339CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000457482CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000537578CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000537856CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000540999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000543082CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000544241CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000561831CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000561992CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000563760CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000564228CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000564403CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000564999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000565018CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000566279CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000566286CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000567880CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000568673CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000568740CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000570177CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000432318ENST00000570287CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000354452CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000356073CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000398339CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000457482CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000537578CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000537856CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000540999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000543082CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000544241CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000561831CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000561992CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000563760CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000564228CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000564403CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000564999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000565018CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000566279CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000566286CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000567880CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000568673CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000568740CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000570177CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000494969ENST00000570287CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000354452CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000356073CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000398339CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000457482CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000537578CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000537856CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000540999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000543082CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000544241CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000561831CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000561992CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000563760CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000564228CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000564403CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000564999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000565018CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000566279CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000566286CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000567880CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000568673CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000568740CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000570177CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000498153ENST00000570287CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000354452CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000356073CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000398339CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000457482CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000537578CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000537856CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000540999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000543082CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000544241CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000561831CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000561992CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000563760CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000564228CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000564403CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000564999CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000565018CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000566279CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000566286CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000567880CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000568673CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000568740CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000570177CSF2RAchrX

1435211

+TCF4chr18

53037568

+
intron-intronENST00000501036ENST00000570287CSF2RAchrX

1435211

+TCF4chr18

53037568

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for CSF2RA-TCF4


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)


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Fusion Protein Features for CSF2RA-TCF4


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:1435211/:53037568)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for CSF2RA-TCF4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for CSF2RA-TCF4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for CSF2RA-TCF4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for CSF2RA-TCF4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCSF2RAC2677877Surfactant Metabolism Dysfunction, Pulmonary, 44CTD_human;GENOMICS_ENGLAND;UNIPROT
HgeneCSF2RAC0034050Pulmonary Alveolar Proteinosis3CTD_human;GENOMICS_ENGLAND
HgeneCSF2RAC0036341Schizophrenia2PSYGENET
HgeneCSF2RAC2931035Pulmonary alveolar proteinosis, congenital2GENOMICS_ENGLAND;ORPHANET
HgeneCSF2RAC0020517Hypersensitivity1GENOMICS_ENGLAND
TgeneC1970431PITT-HOPKINS SYNDROME14CLINGEN;CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
TgeneC0005586Bipolar Disorder5PSYGENET
TgeneC0036341Schizophrenia4PSYGENET
TgeneC0016781Fuchs Endothelial Dystrophy1ORPHANET
TgeneC0018799Heart Diseases1CTD_human
TgeneC0022333Jacksonian Seizure1CTD_human
TgeneC0023893Liver Cirrhosis, Experimental1CTD_human
TgeneC0023903Liver neoplasms1CTD_human
TgeneC0025958Microcephaly1CTD_human
TgeneC0033975Psychotic Disorders1PSYGENET
TgeneC0036572Seizures1CTD_human
TgeneC0149958Complex partial seizures1CTD_human
TgeneC0234533Generalized seizures1CTD_human
TgeneC0234535Clonic Seizures1CTD_human
TgeneC0270824Visual seizure1CTD_human
TgeneC0270844Tonic Seizures1CTD_human
TgeneC0270846Epileptic drop attack1CTD_human
TgeneC0345904Malignant neoplasm of liver1CTD_human
TgeneC0349204Nonorganic psychosis1PSYGENET
TgeneC0376634Craniofacial Abnormalities1CTD_human
TgeneC0422850Seizures, Somatosensory1CTD_human
TgeneC0422852Seizures, Auditory1CTD_human
TgeneC0422853Olfactory seizure1CTD_human
TgeneC0422854Gustatory seizure1CTD_human
TgeneC0422855Vertiginous seizure1CTD_human
TgeneC0494475Tonic - clonic seizures1CTD_human
TgeneC0566602Primary sclerosing cholangitis1ORPHANET
TgeneC0751056Non-epileptic convulsion1CTD_human
TgeneC0751110Single Seizure1CTD_human
TgeneC0751123Atonic Absence Seizures1CTD_human
TgeneC0751494Convulsive Seizures1CTD_human
TgeneC0751495Seizures, Focal1CTD_human
TgeneC0751496Seizures, Sensory1CTD_human
TgeneC1456784Paranoia1PSYGENET
TgeneC1535926Neurodevelopmental Disorders1CTD_human
TgeneC1956147Microlissencephaly1CTD_human
TgeneC2750451CORNEAL DYSTROPHY, FUCHS ENDOTHELIAL, 31CTD_human;GENOMICS_ENGLAND
TgeneC2931456Prostate cancer, familial1CTD_human
TgeneC3495874Nonepileptic Seizures1CTD_human
TgeneC3853041Severe Congenital Microcephaly1CTD_human
TgeneC4048158Convulsions1CTD_human
TgeneC4316903Absence Seizures1CTD_human
TgeneC4317109Epileptic Seizures1CTD_human
TgeneC4317123Myoclonic Seizures1CTD_human
TgeneC4505436Generalized Absence Seizures1CTD_human
TgeneC4721453Peripheral Nervous System Diseases1CTD_human
TgeneC4722327PROSTATE CANCER, HEREDITARY, 11CTD_human