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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:FHL1-COX6C (FusionGDB2 ID:HG2273TG1345)

Fusion Gene Summary for FHL1-COX6C

check button Fusion gene summary
Fusion gene informationFusion gene name: FHL1-COX6C
Fusion gene ID: hg2273tg1345
HgeneTgene
Gene symbol

FHL1

COX6C

Gene ID

2273

1345

Gene namefour and a half LIM domains 1cytochrome c oxidase subunit 6C
SynonymsFCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA-
Cytomap('FHL1')('COX6C')

Xq26.3

8q22.2

Type of geneprotein-codingprotein-coding
Descriptionfour and a half LIM domains protein 1LIM protein SLIMMERfour-and-a-half Lin11, Isl-1 and Mec-3 domains 1skeletal muscle LIM-protein 1cytochrome c oxidase subunit 6Ccytochrome c oxidase polypeptide VIccytochrome c oxidase subunit VIc preproteinepididymis secretory sperm binding protein
Modification date2020031320200313
UniProtAcc.

P09669

Ensembl transtripts involved in fusion geneENST00000345434, ENST00000370683, 
ENST00000370690, ENST00000394153, 
ENST00000394155, ENST00000535737, 
ENST00000539015, ENST00000543669, 
ENST00000370676, ENST00000477080, 
Fusion gene scores* DoF score6 X 4 X 3=7210 X 8 X 6=480
# samples 613
** MAII scorelog2(6/72*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(13/480*10)=-1.88452278258006
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FHL1 [Title/Abstract] AND COX6C [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointFHL1(135292939)-COX6C(100905914), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneFHL1

GO:0003254

regulation of membrane depolarization

18281375

HgeneFHL1

GO:0010972

negative regulation of G2/M transition of mitotic cell cycle

21702045

HgeneFHL1

GO:0030308

negative regulation of cell growth

21702045

HgeneFHL1

GO:0043268

positive regulation of potassium ion transport

18281375

HgeneFHL1

GO:1901016

regulation of potassium ion transmembrane transporter activity

18281375

HgeneFHL1

GO:2000134

negative regulation of G1/S transition of mitotic cell cycle

21702045



check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/ABF825718FHL1chrX

135292939

-COX6Cchr8

100905914

-
ChiTaRS5.0N/ABF827394FHL1chrX

135292939

-COX6Cchr8

100905914

-


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Fusion Gene ORF analysis for FHL1-COX6C

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-5UTRENST00000345434ENST00000297564FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000345434ENST00000518171FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000345434ENST00000520468FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000345434ENST00000523016FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000370683ENST00000297564FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000370683ENST00000518171FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000370683ENST00000520468FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000370683ENST00000523016FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000370690ENST00000297564FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000370690ENST00000518171FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000370690ENST00000520468FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000370690ENST00000523016FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000394153ENST00000297564FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000394153ENST00000518171FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000394153ENST00000520468FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000394153ENST00000523016FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000394155ENST00000297564FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000394155ENST00000518171FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000394155ENST00000520468FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000394155ENST00000523016FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000535737ENST00000297564FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000535737ENST00000518171FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000535737ENST00000520468FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000535737ENST00000523016FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000539015ENST00000297564FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000539015ENST00000518171FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000539015ENST00000520468FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000539015ENST00000523016FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000543669ENST00000297564FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000543669ENST00000518171FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000543669ENST00000520468FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-5UTRENST00000543669ENST00000523016FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000345434ENST00000517682FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000345434ENST00000520271FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000345434ENST00000522940FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000345434ENST00000524245FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000370683ENST00000517682FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000370683ENST00000520271FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000370683ENST00000522940FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000370683ENST00000524245FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000370690ENST00000517682FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000370690ENST00000520271FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000370690ENST00000522940FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000370690ENST00000524245FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000394153ENST00000517682FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000394153ENST00000520271FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000394153ENST00000522940FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000394153ENST00000524245FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000394155ENST00000517682FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000394155ENST00000520271FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000394155ENST00000522940FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000394155ENST00000524245FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000535737ENST00000517682FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000535737ENST00000520271FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000535737ENST00000522940FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000535737ENST00000524245FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000539015ENST00000517682FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000539015ENST00000520271FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000539015ENST00000522940FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000539015ENST00000524245FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000543669ENST00000517682FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000543669ENST00000520271FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000543669ENST00000522940FHL1chrX

135292939

-COX6Cchr8

100905914

-
3UTR-intronENST00000543669ENST00000524245FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-5UTRENST00000370676ENST00000297564FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-5UTRENST00000370676ENST00000518171FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-5UTRENST00000370676ENST00000520468FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-5UTRENST00000370676ENST00000523016FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-5UTRENST00000477080ENST00000297564FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-5UTRENST00000477080ENST00000518171FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-5UTRENST00000477080ENST00000520468FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-5UTRENST00000477080ENST00000523016FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-intronENST00000370676ENST00000517682FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-intronENST00000370676ENST00000520271FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-intronENST00000370676ENST00000522940FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-intronENST00000370676ENST00000524245FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-intronENST00000477080ENST00000517682FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-intronENST00000477080ENST00000520271FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-intronENST00000477080ENST00000522940FHL1chrX

135292939

-COX6Cchr8

100905914

-
intron-intronENST00000477080ENST00000524245FHL1chrX

135292939

-COX6Cchr8

100905914

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for FHL1-COX6C


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)


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Fusion Protein Features for FHL1-COX6C


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:135292939/:100905914)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.COX6C

P09669

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Component of the cytochrome c oxidase, the last enzyme in the mitochondrial electron transport chain which drives oxidative phosphorylation. The respiratory chain contains 3 multisubunit complexes succinate dehydrogenase (complex II, CII), ubiquinol-cytochrome c oxidoreductase (cytochrome b-c1 complex, complex III, CIII) and cytochrome c oxidase (complex IV, CIV), that cooperate to transfer electrons derived from NADH and succinate to molecular oxygen, creating an electrochemical gradient over the inner membrane that drives transmembrane transport and the ATP synthase. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Electrons originating from reduced cytochrome c in the intermembrane space (IMS) are transferred via the dinuclear copper A center (CU(A)) of subunit 2 and heme A of subunit 1 to the active site in subunit 1, a binuclear center (BNC) formed by heme A3 and copper B (CU(B)). The BNC reduces molecular oxygen to 2 water molecules using 4 electrons from cytochrome c in the IMS and 4 protons from the mitochondrial matrix. {ECO:0000250|UniProtKB:P04038}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for FHL1-COX6C


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for FHL1-COX6C


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for FHL1-COX6C


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
TgeneCOX6CP09669DB02659Cholic AcidSmall moleculeApproved

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Related Diseases for FHL1-COX6C


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneFHL1C4225159REDUCING BODY MYOPATHY, X-LINKED 1B, WITH LATE CHILDHOOD OR ADULT ONSET6GENOMICS_ENGLAND;UNIPROT
HgeneFHL1C2678055MYOPATHY, X-LINKED, WITH POSTURAL MUSCLE ATROPHY (disorder)5CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
HgeneFHL1C4225423REDUCING BODY MYOPATHY, X-LINKED 1A, SEVERE, WITH INFANTILE OR EARLY CHILDHOOD ONSET4GENOMICS_ENGLAND;UNIPROT
HgeneFHL1C2678061SCAPULOPERONEAL MYOPATHY, X-LINKED DOMINANT3CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
HgeneFHL1C0023893Liver Cirrhosis, Experimental1CTD_human
HgeneFHL1C0270970Reducing-body myopathy1ORPHANET
HgeneFHL1C1135196Heart Failure, Diastolic1CTD_human
HgeneFHL1C1846010URUGUAY FACIOCARDIOMUSCULOSKELETAL SYNDROME1GENOMICS_ENGLAND