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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
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Fusion gene:FOXP1-COQ10B (FusionGDB2 ID:HG27086TG80219) |
Fusion Gene Summary for FOXP1-COQ10B |
Fusion gene summary |
Fusion gene information | Fusion gene name: FOXP1-COQ10B | Fusion gene ID: hg27086tg80219 | Hgene | Tgene | Gene symbol | FOXP1 | COQ10B | Gene ID | 27086 | 80219 |
Gene name | forkhead box P1 | coenzyme Q10B | |
Synonyms | 12CC4|HSPC215|MFH|QRF1|hFKH1B | - | |
Cytomap | ('FOXP1')('COQ10B') 3p13 | 2q33.1 | |
Type of gene | protein-coding | protein-coding | |
Description | forkhead box protein P1fork head-related protein like Bglutamine-rich factor 1mac-1-regulated forkhead | coenzyme Q-binding protein COQ10 homolog B, mitochondrialcoenzyme Q10 homolog B | |
Modification date | 20200329 | 20200313 | |
UniProtAcc | . | Q9H8M1 | |
Ensembl transtripts involved in fusion gene | ENST00000318789, ENST00000468577, ENST00000475937, ENST00000484350, ENST00000491238, ENST00000493089, ENST00000498215, ENST00000472382, ENST00000318779, | ||
Fusion gene scores | * DoF score | 34 X 30 X 13=13260 | 3 X 2 X 3=18 |
# samples | 38 | 3 | |
** MAII score | log2(38/13260*10)=-5.124937546669 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: FOXP1 [Title/Abstract] AND COQ10B [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | FOXP1(71090479)-COQ10B(198334794), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | FOXP1-COQ10B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. FOXP1-COQ10B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. FOXP1-COQ10B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. FOXP1-COQ10B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. FOXP1-COQ10B seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF. FOXP1-COQ10B seems lost the major protein functional domain in Hgene partner, which is a epigenetic factor due to the frame-shifted ORF. FOXP1-COQ10B seems lost the major protein functional domain in Hgene partner, which is a transcription factor due to the frame-shifted ORF. FOXP1-COQ10B seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | FOXP1 | GO:0002903 | negative regulation of B cell apoptotic process | 25267198 |
Hgene | FOXP1 | GO:0010629 | negative regulation of gene expression | 30111844 |
Hgene | FOXP1 | GO:0030316 | osteoclast differentiation | 18799727 |
Hgene | FOXP1 | GO:0032496 | response to lipopolysaccharide | 18799727 |
Hgene | FOXP1 | GO:0032680 | regulation of tumor necrosis factor production | 18799727 |
Hgene | FOXP1 | GO:0035926 | chemokine (C-C motif) ligand 2 secretion | 18799727 |
Hgene | FOXP1 | GO:0036035 | osteoclast development | 18799727 |
Hgene | FOXP1 | GO:0042116 | macrophage activation | 18799727 |
Hgene | FOXP1 | GO:0042117 | monocyte activation | 18799727 |
Hgene | FOXP1 | GO:0045655 | regulation of monocyte differentiation | 15286807 |
Hgene | FOXP1 | GO:0045892 | negative regulation of transcription, DNA-templated | 20950788 |
Hgene | FOXP1 | GO:0050706 | regulation of interleukin-1 beta secretion | 18799727 |
Hgene | FOXP1 | GO:0050727 | regulation of inflammatory response | 18799727 |
Hgene | FOXP1 | GO:0060766 | negative regulation of androgen receptor signaling pathway | 18640093 |
Hgene | FOXP1 | GO:1900424 | regulation of defense response to bacterium | 18799727 |
Hgene | FOXP1 | GO:1901256 | regulation of macrophage colony-stimulating factor production | 18799727 |
Hgene | FOXP1 | GO:2001182 | regulation of interleukin-12 secretion | 18799727 |
Fusion gene breakpoints across FOXP1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across COQ10B (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | PRAD | TCGA-J4-A83N-01A | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
ChimerDB4 | PRAD | TCGA-J4-A83N | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
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Fusion Gene ORF analysis for FOXP1-COQ10B |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000318789 | ENST00000409010 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000318789 | ENST00000488445 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000318789 | ENST00000545340 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000468577 | ENST00000409010 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000468577 | ENST00000488445 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000468577 | ENST00000545340 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000475937 | ENST00000409010 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000475937 | ENST00000488445 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000475937 | ENST00000545340 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000484350 | ENST00000409010 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000484350 | ENST00000488445 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000484350 | ENST00000545340 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000491238 | ENST00000409010 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000491238 | ENST00000488445 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000491238 | ENST00000545340 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000493089 | ENST00000409010 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000493089 | ENST00000488445 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000493089 | ENST00000545340 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000498215 | ENST00000409010 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000498215 | ENST00000488445 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5CDS-intron | ENST00000498215 | ENST00000545340 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5UTR-3CDS | ENST00000472382 | ENST00000263960 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5UTR-3CDS | ENST00000472382 | ENST00000409398 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5UTR-intron | ENST00000472382 | ENST00000409010 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5UTR-intron | ENST00000472382 | ENST00000488445 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
5UTR-intron | ENST00000472382 | ENST00000545340 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
Frame-shift | ENST00000468577 | ENST00000263960 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
Frame-shift | ENST00000468577 | ENST00000409398 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
Frame-shift | ENST00000475937 | ENST00000263960 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
Frame-shift | ENST00000475937 | ENST00000409398 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
Frame-shift | ENST00000484350 | ENST00000263960 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
Frame-shift | ENST00000484350 | ENST00000409398 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
Frame-shift | ENST00000491238 | ENST00000263960 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
Frame-shift | ENST00000491238 | ENST00000409398 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
Frame-shift | ENST00000498215 | ENST00000263960 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
Frame-shift | ENST00000498215 | ENST00000409398 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
In-frame | ENST00000318789 | ENST00000263960 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
In-frame | ENST00000318789 | ENST00000409398 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
In-frame | ENST00000493089 | ENST00000263960 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
In-frame | ENST00000493089 | ENST00000409398 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
intron-3CDS | ENST00000318779 | ENST00000263960 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
intron-3CDS | ENST00000318779 | ENST00000409398 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
intron-intron | ENST00000318779 | ENST00000409010 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
intron-intron | ENST00000318779 | ENST00000488445 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
intron-intron | ENST00000318779 | ENST00000545340 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000318789 | FOXP1 | chr3 | 71090479 | - | ENST00000263960 | COQ10B | chr2 | 198334794 | + | 3049 | 1395 | 526 | 1563 | 345 |
ENST00000318789 | FOXP1 | chr3 | 71090479 | - | ENST00000409398 | COQ10B | chr2 | 198334794 | + | 1909 | 1395 | 526 | 1563 | 345 |
ENST00000493089 | FOXP1 | chr3 | 71090479 | - | ENST00000263960 | COQ10B | chr2 | 198334794 | + | 3152 | 1498 | 629 | 1666 | 345 |
ENST00000493089 | FOXP1 | chr3 | 71090479 | - | ENST00000409398 | COQ10B | chr2 | 198334794 | + | 2012 | 1498 | 629 | 1666 | 345 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000318789 | ENST00000263960 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + | 0.010431916 | 0.98956805 |
ENST00000318789 | ENST00000409398 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + | 0.013439694 | 0.98656034 |
ENST00000493089 | ENST00000263960 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + | 0.010724968 | 0.98927504 |
ENST00000493089 | ENST00000409398 | FOXP1 | chr3 | 71090479 | - | COQ10B | chr2 | 198334794 | + | 0.020832833 | 0.9791671 |
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Fusion Genomic Features for FOXP1-COQ10B |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
FOXP1 | chr3 | 71090478 | - | COQ10B | chr2 | 198334793 | + | 8.76E-06 | 0.9999912 |
FOXP1 | chr3 | 71090478 | - | COQ10B | chr2 | 198334793 | + | 8.76E-06 | 0.9999912 |
FOXP1 | chr3 | 71090478 | - | COQ10B | chr2 | 198334793 | + | 8.76E-06 | 0.9999912 |
FOXP1 | chr3 | 71090478 | - | COQ10B | chr2 | 198334793 | + | 8.76E-06 | 0.9999912 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for FOXP1-COQ10B |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:71090479/chr2:198334794) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | COQ10B |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Required for the function of coenzyme Q in the respiratory chain. May serve as a chaperone or may be involved in the transport of Q6 from its site of synthesis to the catalytic sites of the respiratory complexes (By similarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000318789 | - | 11 | 21 | 55_230 | 289 | 678.0 | Compositional bias | Note=Gln-rich |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000475937 | - | 10 | 20 | 55_230 | 289 | 678.0 | Compositional bias | Note=Gln-rich |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000493089 | - | 11 | 21 | 55_230 | 289 | 677.0 | Compositional bias | Note=Gln-rich |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000498215 | - | 7 | 17 | 55_230 | 289 | 678.0 | Compositional bias | Note=Gln-rich |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000318779 | - | 1 | 7 | 55_230 | 0 | 115.0 | Compositional bias | Note=Gln-rich |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000484350 | - | 6 | 16 | 55_230 | 213 | 602.0 | Compositional bias | Note=Gln-rich |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000318779 | - | 1 | 7 | 465_555 | 0 | 115.0 | DNA binding | Fork-head |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000318789 | - | 11 | 21 | 465_555 | 289 | 678.0 | DNA binding | Fork-head |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000475937 | - | 10 | 20 | 465_555 | 289 | 678.0 | DNA binding | Fork-head |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000484350 | - | 6 | 16 | 465_555 | 213 | 602.0 | DNA binding | Fork-head |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000493089 | - | 11 | 21 | 465_555 | 289 | 677.0 | DNA binding | Fork-head |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000498215 | - | 7 | 17 | 465_555 | 289 | 678.0 | DNA binding | Fork-head |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000318779 | - | 1 | 7 | 348_369 | 0 | 115.0 | Region | Note=Leucine-zipper |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000318779 | - | 1 | 7 | 382_386 | 0 | 115.0 | Region | CTBP1-binding |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000318789 | - | 11 | 21 | 348_369 | 289 | 678.0 | Region | Note=Leucine-zipper |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000318789 | - | 11 | 21 | 382_386 | 289 | 678.0 | Region | CTBP1-binding |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000475937 | - | 10 | 20 | 348_369 | 289 | 678.0 | Region | Note=Leucine-zipper |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000475937 | - | 10 | 20 | 382_386 | 289 | 678.0 | Region | CTBP1-binding |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000484350 | - | 6 | 16 | 348_369 | 213 | 602.0 | Region | Note=Leucine-zipper |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000484350 | - | 6 | 16 | 382_386 | 213 | 602.0 | Region | CTBP1-binding |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000493089 | - | 11 | 21 | 348_369 | 289 | 677.0 | Region | Note=Leucine-zipper |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000493089 | - | 11 | 21 | 382_386 | 289 | 677.0 | Region | CTBP1-binding |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000498215 | - | 7 | 17 | 348_369 | 289 | 678.0 | Region | Note=Leucine-zipper |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000498215 | - | 7 | 17 | 382_386 | 289 | 678.0 | Region | CTBP1-binding |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000318779 | - | 1 | 7 | 306_331 | 0 | 115.0 | Zinc finger | Note=C2H2-type |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000318789 | - | 11 | 21 | 306_331 | 289 | 678.0 | Zinc finger | Note=C2H2-type |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000475937 | - | 10 | 20 | 306_331 | 289 | 678.0 | Zinc finger | Note=C2H2-type |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000484350 | - | 6 | 16 | 306_331 | 213 | 602.0 | Zinc finger | Note=C2H2-type |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000493089 | - | 11 | 21 | 306_331 | 289 | 677.0 | Zinc finger | Note=C2H2-type |
Hgene | FOXP1 | chr3:71090479 | chr2:198334794 | ENST00000498215 | - | 7 | 17 | 306_331 | 289 | 678.0 | Zinc finger | Note=C2H2-type |
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Fusion Gene Sequence for FOXP1-COQ10B |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>31195_31195_1_FOXP1-COQ10B_FOXP1_chr3_71090479_ENST00000318789_COQ10B_chr2_198334794_ENST00000263960_length(transcript)=3049nt_BP=1395nt GGGGGGTGGGCGCCAGCGCCCCGGCGAACGGCAAAGAGGGAGCCGCTCCCGCTCGGGGGGCCGCTGGAGTGCCCAGCGGGAACCCGAAAG TTTGTAAGAGGAAGAGAGCGCGCGGCGAGCGAGCGAGCGGGCCGGGGGCAGCGGCAGCGGCGCCGGGGACCATGGTGCTGCCGGCGCCTC CTCCGCGGGCGTGAAGGCGGCGCTCCTACTCCCTCCCCGGACTCCGCGGTGTCCCAGAAGCTTTTGTTGACAATTCCAGTTTCCGAACAA AACATTTCGGCAATGGTGAGGGCTTCGATCCCTTCTCTGATTTGCTGTCAGCCATGAACGGATGGATGTGATGCCTGCTAGCCAAAAGGC TTCCCTCTGTGTGTTGCAGTCCTGTGGCATTATGCATGCCCCCTCCCAGTGACCCCAGGCTTTTTATGGCTGTGAGACACGTTAAAATTT CAGGGGTAAGACGTGACCTTTTGAGGTGACTATAACTGAAGATTGCTTTACAGAAGCCAAAAAAGGTTTTTGAGTCATGATGCAAGAATC TGGGACTGAGACAAAAAGTAACGGTTCAGCCATCCAGAATGGGTCGGGCGGCAGCAACCACTTACTAGAGTGCGGCGGTCTTCGGGAGGG GCGGTCCAACGGAGAGACGCCGGCCGTGGACATCGGGGCAGCTGACCTCGCCCACGCCCAGCAGCAGCAGCAACAGGCACTTCAGGTGGC AAGACAGCTCCTTCTTCAGCAGCAACAGCAGCAGCAAGTTAGTGGATTAAAATCTCCCAAGAGGAATGACAAACAACCAGCTCTTCAGGT TCCCGTGTCAGTGGCTATGATGACACCTCAAGTTATCACTCCCCAGCAAATGCAGCAGATCCTCCAGCAACAAGTGCTGAGCCCTCAGCA GCTCCAGGTTCTCCTCCAGCAGCAGCAGGCCCTCATGCTTCAACAGCAGCAGCTTCAAGAGTTTTATAAAAAACAACAGGAACAGTTGCA GCTTCAACTTTTACAACAACAACATGCTGGAAAACAGCCTAAAGAGCAACAGCAGGTGGCTACCCAGCAGTTGGCTTTTCAGCAGCAGCT TTTACAGATGCAGCAGTTACAGCAGCAGCACCTCCTGTCTTTGCAGCGCCAAGGCCTTCTGACAATTCAGCCCGGGCAGCCTGCCCTTCC CCTTCAACCTCTTGCTCAAGGCATGATTCCAACAGAACTGCAGCAGCTCTGGAAAGAAGTGACAAGTGCTCATACTGCAGAAGAAACCAC AGGCAACAATCACAGCAGTTTGGATCTGACCACGACATGTGTCTCCTCCTCTGCACCTTCCAAGACCTCCTTAATAATGAACCCACATGC CTCTACCAATGGACAGCTCTCAGTCCACACTCCCAAAAGGGAAAGGCATCTTGTACTGATGGGAGACTTTTCAATCATTTGGAGACTATT TGGCGTTTTAGCCCAGGTCTTCCTGGCTACCCAAGAACTTGTACCTTGGATTTTTCAATTTCTTTTGAATTTCGATCACTTCTACATTCC CAGCTTGCCACACTCTTTTTTGATGAAGTTGTGAAGCAGATGGTAGCTGCCTTTGAAAGAAGAGCATGTAAGCTGTATGGTCCAGAAACA AATATACCTCGGGAGTTAATGCTTCATGAAGTCCATCACACATAAAGGCAAAAAAGAACTGGTGCCACCTGCTTCTGACTTTAGTTTGTT CACTTTTAGGAAGTATTTTCATGACATGTTTTCAGAAGCCAGAAAGCATTTGTTAAACGCAGCTTTGGTTATAAACCTGCACCATTGAAA ATTTGCACATAGAATATAGACTCACTTGTACATAGAATTATTTCTTCAAGTATAATTCAAAATAATATGGACATTATCATGTTCTGCATT ACAATAATGGGATGTCATCACCATTGCTAGAATACTGGCATGATTCTTCTGAGCAGAAGTTGAAACTGTAAATTTAAACCTTTTAATTAT CACCTTACCTGAAAGAGGTTAGTTAAGATATTCACACAGTATGTATTATATTAACCATATCACACTTAAGTTATTAAATTCAGACTATTT GTAACTTATTGTTATAGGGCCTGCCGTATGGCTTAGGATATTTGAGTAATCATATATTTAAAGTAAAAACTTTGGGCTGGGCACAGTGGC TCACACCTGTAATCCCAGCACTTGGGGAAGCTGAGGTGGGCAGATCAGTTGAGGTCAGGAGTTCTAGACCAGCCTGGTCAACATGGCGAA ACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCACACACCTGTAATCCCAGTTACTTGGGAGGCTGAGGCACAAGAAT CGCTTGAACCCGGGAGGCGGAGGTTGCAGTTAGCCAAGATCGCCCTGCTGCACTCCAGCCTGGGCAACAGAGGGAGACTCTGTCTCCAAA AACAAAAACAAAAACTGTTAGTGAAGGTTCCCTGGGACTTTTGATATTTTAAAAATTGTTCTTATGACTAGTAGATAAATTCATTGCCAT AATGAGGCTAGCTCCCAGATAAACAGTGTATTTTCTTCTTTTTTTTTTTTTTTTTGGTGAGTGGTCCAGAGCTTTAAGCTACTTTTCCAG TAGTTTGCCACTTTCTCCGAGGTAGTTTGGCTGCTCTTTCAGTAATGCTAATTGTGTGTCAAATTTTGTCTACAACAGTAGGCAACAGAT GAAGATAAGTTGGTTGAATGTCTCCAGCACTATGCATCCCTATTTTCTATTTATTGTGTACACTCACTTTCAGTAATGTGTTTCAAACTG GTATTTTTTAAAAAACAAATCAATGTAAGGACTGAAGTTGAAGTAGCAATGTAATAAAGTTAATTTGTTTATTTTTTGTACAGTTAGTTT GGTTATTGAAATCTTCCTATATTGTTTAAATGTGTATTTGCATAGACATAGTAAAGTGTTACAGCATTTCATGTCTTAAAAATATCTATG >31195_31195_1_FOXP1-COQ10B_FOXP1_chr3_71090479_ENST00000318789_COQ10B_chr2_198334794_ENST00000263960_length(amino acids)=345AA_BP=289 MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQALQVARQLLLQQQQQQQVSGLKSPKRNDKQ PALQVPVSVAMMTPQVITPQQMQQILQQQVLSPQQLQVLLQQQQALMLQQQQLQEFYKKQQEQLQLQLLQQQHAGKQPKEQQQVATQQLA FQQQLLQMQQLQQQHLLSLQRQGLLTIQPGQPALPLQPLAQGMIPTELQQLWKEVTSAHTAEETTGNNHSSLDLTTTCVSSSAPSKTSLI -------------------------------------------------------------- >31195_31195_2_FOXP1-COQ10B_FOXP1_chr3_71090479_ENST00000318789_COQ10B_chr2_198334794_ENST00000409398_length(transcript)=1909nt_BP=1395nt GGGGGGTGGGCGCCAGCGCCCCGGCGAACGGCAAAGAGGGAGCCGCTCCCGCTCGGGGGGCCGCTGGAGTGCCCAGCGGGAACCCGAAAG TTTGTAAGAGGAAGAGAGCGCGCGGCGAGCGAGCGAGCGGGCCGGGGGCAGCGGCAGCGGCGCCGGGGACCATGGTGCTGCCGGCGCCTC CTCCGCGGGCGTGAAGGCGGCGCTCCTACTCCCTCCCCGGACTCCGCGGTGTCCCAGAAGCTTTTGTTGACAATTCCAGTTTCCGAACAA AACATTTCGGCAATGGTGAGGGCTTCGATCCCTTCTCTGATTTGCTGTCAGCCATGAACGGATGGATGTGATGCCTGCTAGCCAAAAGGC TTCCCTCTGTGTGTTGCAGTCCTGTGGCATTATGCATGCCCCCTCCCAGTGACCCCAGGCTTTTTATGGCTGTGAGACACGTTAAAATTT CAGGGGTAAGACGTGACCTTTTGAGGTGACTATAACTGAAGATTGCTTTACAGAAGCCAAAAAAGGTTTTTGAGTCATGATGCAAGAATC TGGGACTGAGACAAAAAGTAACGGTTCAGCCATCCAGAATGGGTCGGGCGGCAGCAACCACTTACTAGAGTGCGGCGGTCTTCGGGAGGG GCGGTCCAACGGAGAGACGCCGGCCGTGGACATCGGGGCAGCTGACCTCGCCCACGCCCAGCAGCAGCAGCAACAGGCACTTCAGGTGGC AAGACAGCTCCTTCTTCAGCAGCAACAGCAGCAGCAAGTTAGTGGATTAAAATCTCCCAAGAGGAATGACAAACAACCAGCTCTTCAGGT TCCCGTGTCAGTGGCTATGATGACACCTCAAGTTATCACTCCCCAGCAAATGCAGCAGATCCTCCAGCAACAAGTGCTGAGCCCTCAGCA GCTCCAGGTTCTCCTCCAGCAGCAGCAGGCCCTCATGCTTCAACAGCAGCAGCTTCAAGAGTTTTATAAAAAACAACAGGAACAGTTGCA GCTTCAACTTTTACAACAACAACATGCTGGAAAACAGCCTAAAGAGCAACAGCAGGTGGCTACCCAGCAGTTGGCTTTTCAGCAGCAGCT TTTACAGATGCAGCAGTTACAGCAGCAGCACCTCCTGTCTTTGCAGCGCCAAGGCCTTCTGACAATTCAGCCCGGGCAGCCTGCCCTTCC CCTTCAACCTCTTGCTCAAGGCATGATTCCAACAGAACTGCAGCAGCTCTGGAAAGAAGTGACAAGTGCTCATACTGCAGAAGAAACCAC AGGCAACAATCACAGCAGTTTGGATCTGACCACGACATGTGTCTCCTCCTCTGCACCTTCCAAGACCTCCTTAATAATGAACCCACATGC CTCTACCAATGGACAGCTCTCAGTCCACACTCCCAAAAGGGAAAGGCATCTTGTACTGATGGGAGACTTTTCAATCATTTGGAGACTATT TGGCGTTTTAGCCCAGGTCTTCCTGGCTACCCAAGAACTTGTACCTTGGATTTTTCAATTTCTTTTGAATTTCGATCACTTCTACATTCC CAGCTTGCCACACTCTTTTTTGATGAAGTTGTGAAGCAGATGGTAGCTGCCTTTGAAAGAAGAGCATGTAAGCTGTATGGTCCAGAAACA AATATACCTCGGGAGTTAATGCTTCATGAAGTCCATCACACATAAAGGCAAAAAAGAACTGGTGCCACCTGCTTCTGACTTTAGTTTGTT CACTTTTAGGAAGTATTTTCATGACATGTTTTCAGAAGCCAGAAAGCATTTGTTAAACGCAGCTTTGGTTATAAACCTGCACCATTGAAA ATTTGCACATAGAATATAGACTCACTTGTACATAGAATTATTTCTTCAAGTATAATTCAAAATAATATGGACATTATCATGTTCTGCATT >31195_31195_2_FOXP1-COQ10B_FOXP1_chr3_71090479_ENST00000318789_COQ10B_chr2_198334794_ENST00000409398_length(amino acids)=345AA_BP=289 MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQALQVARQLLLQQQQQQQVSGLKSPKRNDKQ PALQVPVSVAMMTPQVITPQQMQQILQQQVLSPQQLQVLLQQQQALMLQQQQLQEFYKKQQEQLQLQLLQQQHAGKQPKEQQQVATQQLA FQQQLLQMQQLQQQHLLSLQRQGLLTIQPGQPALPLQPLAQGMIPTELQQLWKEVTSAHTAEETTGNNHSSLDLTTTCVSSSAPSKTSLI -------------------------------------------------------------- >31195_31195_3_FOXP1-COQ10B_FOXP1_chr3_71090479_ENST00000493089_COQ10B_chr2_198334794_ENST00000263960_length(transcript)=3152nt_BP=1498nt ATTTATTGTGTGGCGGTTGCACGCTGTACTCGCGGCGGCCCGGCCCTCGCCCGGGAGTGCGTGTGTGCGCGCGTGTGTGCGCGAGTGAGT GTGTGCGCGGGGTGCGCGCGCGGGCGGGAGTGGGCGCGCGCGGGGAAAGGCCCGAAAACACCTTAGTTTGCACCGAGAGACCATTTGCAG CGGAACCCGAAAGTTTGTAAGAGGAAGAGAGCGCGCGGCGAGCGAGCGAGCGGGCCGGGGGCAGCGGCAGCGGCGCCGGGGACCATGGTG CTGCCGGCGCCTCCTCCGCGGGCGTGAAGGCGGCGCTCCTACTCCCTCCCCGGACTCCGCGGTGTCCCAGAAGCTTTTGTTGACAATTCC AGTTTCCGAACAAAACATTTCGGCAATGGTGAGGGCTTCGATCCCTTCTCTGATTTGCTGTCAGCCATGAACGGATGGATGTGATGCCTG CTAGCCAAAAGGCTTCCCTCTGTGTGTTGCAGTCCTGTGGCATTATGCATGCCCCCTCCCAGTGACCCCAGGCTTTTTATGGCTGTGAGA CACGTTAAAATTTCAGGGGTAAGACGTGACCTTTTGAGGTGACTATAACTGAAGATTGCTTTACAGAAGCCAAAAAAGGTTTTTGAGTCA TGATGCAAGAATCTGGGACTGAGACAAAAAGTAACGGTTCAGCCATCCAGAATGGGTCGGGCGGCAGCAACCACTTACTAGAGTGCGGCG GTCTTCGGGAGGGGCGGTCCAACGGAGAGACGCCGGCCGTGGACATCGGGGCAGCTGACCTCGCCCACGCCCAGCAGCAGCAGCAACAGG CACTTCAGGTGGCAAGACAGCTCCTTCTTCAGCAGCAACAGCAGCAGCAAGTTAGTGGATTAAAATCTCCCAAGAGGAATGACAAACAAC CAGCTCTTCAGGTTCCCGTGTCAGTGGCTATGATGACACCTCAAGTTATCACTCCCCAGCAAATGCAGCAGATCCTCCAGCAACAAGTGC TGAGCCCTCAGCAGCTCCAGGTTCTCCTCCAGCAGCAGCAGGCCCTCATGCTTCAACAGCAGCAGCTTCAAGAGTTTTATAAAAAACAAC AGGAACAGTTGCAGCTTCAACTTTTACAACAACAACATGCTGGAAAACAGCCTAAAGAGCAACAGCAGGTGGCTACCCAGCAGTTGGCTT TTCAGCAGCAGCTTTTACAGATGCAGCAGTTACAGCAGCAGCACCTCCTGTCTTTGCAGCGCCAAGGCCTTCTGACAATTCAGCCCGGGC AGCCTGCCCTTCCCCTTCAACCTCTTGCTCAAGGCATGATTCCAACAGAACTGCAGCAGCTCTGGAAAGAAGTGACAAGTGCTCATACTG CAGAAGAAACCACAGGCAACAATCACAGCAGTTTGGATCTGACCACGACATGTGTCTCCTCCTCTGCACCTTCCAAGACCTCCTTAATAA TGAACCCACATGCCTCTACCAATGGACAGCTCTCAGTCCACACTCCCAAAAGGGAAAGGCATCTTGTACTGATGGGAGACTTTTCAATCA TTTGGAGACTATTTGGCGTTTTAGCCCAGGTCTTCCTGGCTACCCAAGAACTTGTACCTTGGATTTTTCAATTTCTTTTGAATTTCGATC ACTTCTACATTCCCAGCTTGCCACACTCTTTTTTGATGAAGTTGTGAAGCAGATGGTAGCTGCCTTTGAAAGAAGAGCATGTAAGCTGTA TGGTCCAGAAACAAATATACCTCGGGAGTTAATGCTTCATGAAGTCCATCACACATAAAGGCAAAAAAGAACTGGTGCCACCTGCTTCTG ACTTTAGTTTGTTCACTTTTAGGAAGTATTTTCATGACATGTTTTCAGAAGCCAGAAAGCATTTGTTAAACGCAGCTTTGGTTATAAACC TGCACCATTGAAAATTTGCACATAGAATATAGACTCACTTGTACATAGAATTATTTCTTCAAGTATAATTCAAAATAATATGGACATTAT CATGTTCTGCATTACAATAATGGGATGTCATCACCATTGCTAGAATACTGGCATGATTCTTCTGAGCAGAAGTTGAAACTGTAAATTTAA ACCTTTTAATTATCACCTTACCTGAAAGAGGTTAGTTAAGATATTCACACAGTATGTATTATATTAACCATATCACACTTAAGTTATTAA ATTCAGACTATTTGTAACTTATTGTTATAGGGCCTGCCGTATGGCTTAGGATATTTGAGTAATCATATATTTAAAGTAAAAACTTTGGGC TGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTGGGGAAGCTGAGGTGGGCAGATCAGTTGAGGTCAGGAGTTCTAGACCAGCCTGG TCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCACACACCTGTAATCCCAGTTACTTGGGAGGCT GAGGCACAAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTTAGCCAAGATCGCCCTGCTGCACTCCAGCCTGGGCAACAGAGGGAGA CTCTGTCTCCAAAAACAAAAACAAAAACTGTTAGTGAAGGTTCCCTGGGACTTTTGATATTTTAAAAATTGTTCTTATGACTAGTAGATA AATTCATTGCCATAATGAGGCTAGCTCCCAGATAAACAGTGTATTTTCTTCTTTTTTTTTTTTTTTTTGGTGAGTGGTCCAGAGCTTTAA GCTACTTTTCCAGTAGTTTGCCACTTTCTCCGAGGTAGTTTGGCTGCTCTTTCAGTAATGCTAATTGTGTGTCAAATTTTGTCTACAACA GTAGGCAACAGATGAAGATAAGTTGGTTGAATGTCTCCAGCACTATGCATCCCTATTTTCTATTTATTGTGTACACTCACTTTCAGTAAT GTGTTTCAAACTGGTATTTTTTAAAAAACAAATCAATGTAAGGACTGAAGTTGAAGTAGCAATGTAATAAAGTTAATTTGTTTATTTTTT GTACAGTTAGTTTGGTTATTGAAATCTTCCTATATTGTTTAAATGTGTATTTGCATAGACATAGTAAAGTGTTACAGCATTTCATGTCTT AAAAATATCTATGAAGATATCTAAAATATCTATTTCTATGAAGAAACAGACTTTAACAAATATAAGCAAAATTCAGTTTTCTTTTAACCA >31195_31195_3_FOXP1-COQ10B_FOXP1_chr3_71090479_ENST00000493089_COQ10B_chr2_198334794_ENST00000263960_length(amino acids)=345AA_BP=289 MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQALQVARQLLLQQQQQQQVSGLKSPKRNDKQ PALQVPVSVAMMTPQVITPQQMQQILQQQVLSPQQLQVLLQQQQALMLQQQQLQEFYKKQQEQLQLQLLQQQHAGKQPKEQQQVATQQLA FQQQLLQMQQLQQQHLLSLQRQGLLTIQPGQPALPLQPLAQGMIPTELQQLWKEVTSAHTAEETTGNNHSSLDLTTTCVSSSAPSKTSLI -------------------------------------------------------------- >31195_31195_4_FOXP1-COQ10B_FOXP1_chr3_71090479_ENST00000493089_COQ10B_chr2_198334794_ENST00000409398_length(transcript)=2012nt_BP=1498nt ATTTATTGTGTGGCGGTTGCACGCTGTACTCGCGGCGGCCCGGCCCTCGCCCGGGAGTGCGTGTGTGCGCGCGTGTGTGCGCGAGTGAGT GTGTGCGCGGGGTGCGCGCGCGGGCGGGAGTGGGCGCGCGCGGGGAAAGGCCCGAAAACACCTTAGTTTGCACCGAGAGACCATTTGCAG CGGAACCCGAAAGTTTGTAAGAGGAAGAGAGCGCGCGGCGAGCGAGCGAGCGGGCCGGGGGCAGCGGCAGCGGCGCCGGGGACCATGGTG CTGCCGGCGCCTCCTCCGCGGGCGTGAAGGCGGCGCTCCTACTCCCTCCCCGGACTCCGCGGTGTCCCAGAAGCTTTTGTTGACAATTCC AGTTTCCGAACAAAACATTTCGGCAATGGTGAGGGCTTCGATCCCTTCTCTGATTTGCTGTCAGCCATGAACGGATGGATGTGATGCCTG CTAGCCAAAAGGCTTCCCTCTGTGTGTTGCAGTCCTGTGGCATTATGCATGCCCCCTCCCAGTGACCCCAGGCTTTTTATGGCTGTGAGA CACGTTAAAATTTCAGGGGTAAGACGTGACCTTTTGAGGTGACTATAACTGAAGATTGCTTTACAGAAGCCAAAAAAGGTTTTTGAGTCA TGATGCAAGAATCTGGGACTGAGACAAAAAGTAACGGTTCAGCCATCCAGAATGGGTCGGGCGGCAGCAACCACTTACTAGAGTGCGGCG GTCTTCGGGAGGGGCGGTCCAACGGAGAGACGCCGGCCGTGGACATCGGGGCAGCTGACCTCGCCCACGCCCAGCAGCAGCAGCAACAGG CACTTCAGGTGGCAAGACAGCTCCTTCTTCAGCAGCAACAGCAGCAGCAAGTTAGTGGATTAAAATCTCCCAAGAGGAATGACAAACAAC CAGCTCTTCAGGTTCCCGTGTCAGTGGCTATGATGACACCTCAAGTTATCACTCCCCAGCAAATGCAGCAGATCCTCCAGCAACAAGTGC TGAGCCCTCAGCAGCTCCAGGTTCTCCTCCAGCAGCAGCAGGCCCTCATGCTTCAACAGCAGCAGCTTCAAGAGTTTTATAAAAAACAAC AGGAACAGTTGCAGCTTCAACTTTTACAACAACAACATGCTGGAAAACAGCCTAAAGAGCAACAGCAGGTGGCTACCCAGCAGTTGGCTT TTCAGCAGCAGCTTTTACAGATGCAGCAGTTACAGCAGCAGCACCTCCTGTCTTTGCAGCGCCAAGGCCTTCTGACAATTCAGCCCGGGC AGCCTGCCCTTCCCCTTCAACCTCTTGCTCAAGGCATGATTCCAACAGAACTGCAGCAGCTCTGGAAAGAAGTGACAAGTGCTCATACTG CAGAAGAAACCACAGGCAACAATCACAGCAGTTTGGATCTGACCACGACATGTGTCTCCTCCTCTGCACCTTCCAAGACCTCCTTAATAA TGAACCCACATGCCTCTACCAATGGACAGCTCTCAGTCCACACTCCCAAAAGGGAAAGGCATCTTGTACTGATGGGAGACTTTTCAATCA TTTGGAGACTATTTGGCGTTTTAGCCCAGGTCTTCCTGGCTACCCAAGAACTTGTACCTTGGATTTTTCAATTTCTTTTGAATTTCGATC ACTTCTACATTCCCAGCTTGCCACACTCTTTTTTGATGAAGTTGTGAAGCAGATGGTAGCTGCCTTTGAAAGAAGAGCATGTAAGCTGTA TGGTCCAGAAACAAATATACCTCGGGAGTTAATGCTTCATGAAGTCCATCACACATAAAGGCAAAAAAGAACTGGTGCCACCTGCTTCTG ACTTTAGTTTGTTCACTTTTAGGAAGTATTTTCATGACATGTTTTCAGAAGCCAGAAAGCATTTGTTAAACGCAGCTTTGGTTATAAACC TGCACCATTGAAAATTTGCACATAGAATATAGACTCACTTGTACATAGAATTATTTCTTCAAGTATAATTCAAAATAATATGGACATTAT >31195_31195_4_FOXP1-COQ10B_FOXP1_chr3_71090479_ENST00000493089_COQ10B_chr2_198334794_ENST00000409398_length(amino acids)=345AA_BP=289 MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQALQVARQLLLQQQQQQQVSGLKSPKRNDKQ PALQVPVSVAMMTPQVITPQQMQQILQQQVLSPQQLQVLLQQQQALMLQQQQLQEFYKKQQEQLQLQLLQQQHAGKQPKEQQQVATQQLA FQQQLLQMQQLQQQHLLSLQRQGLLTIQPGQPALPLQPLAQGMIPTELQQLWKEVTSAHTAEETTGNNHSSLDLTTTCVSSSAPSKTSLI -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for FOXP1-COQ10B |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for FOXP1-COQ10B |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for FOXP1-COQ10B |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | FOXP1 | C3150923 | MENTAL RETARDATION WITH LANGUAGE IMPAIRMENT AND AUTISTIC FEATURES | 16 | CLINGEN;GENOMICS_ENGLAND |
Hgene | FOXP1 | C4013764 | MENTAL RETARDATION WITH LANGUAGE IMPAIRMENT AND WITH OR WITHOUT AUTISTIC FEATURES | 3 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | FOXP1 | C0006413 | Burkitt Lymphoma | 1 | ORPHANET |
Hgene | FOXP1 | C0024232 | Lymphatic Metastasis | 1 | CTD_human |
Hgene | FOXP1 | C0027626 | Neoplasm Invasiveness | 1 | CTD_human |
Hgene | FOXP1 | C0030297 | Pancreatic Neoplasm | 1 | CTD_human |
Hgene | FOXP1 | C0042900 | Vitiligo | 1 | CTD_human |
Hgene | FOXP1 | C0087031 | Juvenile-Onset Still Disease | 1 | CTD_human |
Hgene | FOXP1 | C0242647 | Mucosa-Associated Lymphoid Tissue Lymphoma | 1 | ORPHANET |
Hgene | FOXP1 | C0279628 | Adenocarcinoma Of Esophagus | 1 | CTD_human |
Hgene | FOXP1 | C0346647 | Malignant neoplasm of pancreas | 1 | CTD_human |
Hgene | FOXP1 | C1292769 | Precursor B-cell lymphoblastic leukemia | 1 | ORPHANET |
Hgene | FOXP1 | C1510586 | Autism Spectrum Disorders | 1 | CTD_human |
Hgene | FOXP1 | C1535926 | Neurodevelopmental Disorders | 1 | CTD_human |
Hgene | FOXP1 | C3495559 | Juvenile arthritis | 1 | CTD_human |
Hgene | FOXP1 | C3714758 | Juvenile psoriatic arthritis | 1 | CTD_human |
Hgene | FOXP1 | C4552091 | Polyarthritis, Juvenile, Rheumatoid Factor Negative | 1 | CTD_human |
Hgene | FOXP1 | C4704862 | Polyarthritis, Juvenile, Rheumatoid Factor Positive | 1 | CTD_human |