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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:LSR-HDLBP (FusionGDB2 ID:HG51599TG3069) |
Fusion Gene Summary for LSR-HDLBP |
Fusion gene summary |
Fusion gene information | Fusion gene name: LSR-HDLBP | Fusion gene ID: hg51599tg3069 | Hgene | Tgene | Gene symbol | LSR | HDLBP | Gene ID | 51599 | 3069 |
Gene name | lipolysis stimulated lipoprotein receptor | high density lipoprotein binding protein | |
Synonyms | ILDR3|LISCH7 | HBP|PRO2900|VGL | |
Cytomap | ('LSR')('HDLBP') 19q13.12 | 2q37.3 | |
Type of gene | protein-coding | protein-coding | |
Description | lipolysis-stimulated lipoprotein receptorLISCH proteinimmunoglobulin-like domain containing receptor 3lipolysis-stimulated remnantliver-specific bHLH-Zip transcription factor | vigilinHDL-binding protein | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000347609, ENST00000354900, ENST00000360798, ENST00000361790, ENST00000427250, ENST00000602122, ENST00000597933, | ||
Fusion gene scores | * DoF score | 10 X 6 X 6=360 | 28 X 24 X 13=8736 |
# samples | 11 | 29 | |
** MAII score | log2(11/360*10)=-1.71049338280502 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(29/8736*10)=-4.91284805090492 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: LSR [Title/Abstract] AND HDLBP [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | LSR(35758865)-HDLBP(242202277), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | LSR-HDLBP seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. LSR-HDLBP seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. LSR-HDLBP seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across LSR (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across HDLBP (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | COAD | TCGA-CK-6746-01A | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
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Fusion Gene ORF analysis for LSR-HDLBP |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000347609 | ENST00000476807 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
5CDS-intron | ENST00000354900 | ENST00000476807 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
5CDS-intron | ENST00000360798 | ENST00000476807 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
5CDS-intron | ENST00000361790 | ENST00000476807 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
5CDS-intron | ENST00000427250 | ENST00000476807 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
5CDS-intron | ENST00000602122 | ENST00000476807 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000347609 | ENST00000310931 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000347609 | ENST00000391975 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000347609 | ENST00000391976 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000347609 | ENST00000427183 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000360798 | ENST00000310931 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000360798 | ENST00000391975 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000360798 | ENST00000391976 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000360798 | ENST00000427183 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000361790 | ENST00000310931 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000361790 | ENST00000391975 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000361790 | ENST00000391976 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000361790 | ENST00000427183 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000427250 | ENST00000310931 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000427250 | ENST00000391975 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000427250 | ENST00000391976 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000427250 | ENST00000427183 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000602122 | ENST00000310931 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000602122 | ENST00000391975 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000602122 | ENST00000391976 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
Frame-shift | ENST00000602122 | ENST00000427183 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
In-frame | ENST00000354900 | ENST00000310931 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
In-frame | ENST00000354900 | ENST00000391975 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
In-frame | ENST00000354900 | ENST00000391976 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
In-frame | ENST00000354900 | ENST00000427183 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
intron-3CDS | ENST00000597933 | ENST00000310931 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
intron-3CDS | ENST00000597933 | ENST00000391975 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
intron-3CDS | ENST00000597933 | ENST00000391976 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
intron-3CDS | ENST00000597933 | ENST00000427183 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
intron-intron | ENST00000597933 | ENST00000476807 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000354900 | LSR | chr19 | 35758865 | - | ENST00000391976 | HDLBP | chr2 | 242202277 | - | 6003 | 2105 | 56 | 1999 | 647 |
ENST00000354900 | LSR | chr19 | 35758865 | - | ENST00000310931 | HDLBP | chr2 | 242202277 | - | 6003 | 2105 | 56 | 1999 | 647 |
ENST00000354900 | LSR | chr19 | 35758865 | - | ENST00000391975 | HDLBP | chr2 | 242202277 | - | 7951 | 2105 | 56 | 1999 | 647 |
ENST00000354900 | LSR | chr19 | 35758865 | - | ENST00000427183 | HDLBP | chr2 | 242202277 | - | 5786 | 2105 | 56 | 1999 | 647 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000354900 | ENST00000391976 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - | 0.02922957 | 0.9707704 |
ENST00000354900 | ENST00000310931 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - | 0.02922957 | 0.9707704 |
ENST00000354900 | ENST00000391975 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - | 0.01823292 | 0.9817671 |
ENST00000354900 | ENST00000427183 | LSR | chr19 | 35758865 | - | HDLBP | chr2 | 242202277 | - | 0.02895047 | 0.9710496 |
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Fusion Genomic Features for LSR-HDLBP |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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Fusion Protein Features for LSR-HDLBP |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:35758865/chr2:242202277) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000347609 | - | 9 | 9 | 280_304 | 626 | 592.0 | Compositional bias | Note=Cys-rich |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000354900 | - | 9 | 9 | 280_304 | 666 | 631.0 | Compositional bias | Note=Cys-rich |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000360798 | - | 8 | 8 | 280_304 | 616 | 582.0 | Compositional bias | Note=Cys-rich |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000361790 | - | 10 | 10 | 280_304 | 683 | 650.0 | Compositional bias | Note=Cys-rich |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000602122 | - | 9 | 9 | 280_304 | 664 | 630.0 | Compositional bias | Note=Cys-rich |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000347609 | - | 9 | 9 | 86_234 | 626 | 592.0 | Domain | Note=Ig-like V-type |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000354900 | - | 9 | 9 | 86_234 | 666 | 631.0 | Domain | Note=Ig-like V-type |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000360798 | - | 8 | 8 | 86_234 | 616 | 582.0 | Domain | Note=Ig-like V-type |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000361790 | - | 10 | 10 | 86_234 | 683 | 650.0 | Domain | Note=Ig-like V-type |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000602122 | - | 9 | 9 | 86_234 | 664 | 630.0 | Domain | Note=Ig-like V-type |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000347609 | - | 9 | 9 | 1_259 | 626 | 592.0 | Topological domain | Extracellular |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000347609 | - | 9 | 9 | 281_649 | 626 | 592.0 | Topological domain | Cytoplasmic |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000354900 | - | 9 | 9 | 1_259 | 666 | 631.0 | Topological domain | Extracellular |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000354900 | - | 9 | 9 | 281_649 | 666 | 631.0 | Topological domain | Cytoplasmic |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000360798 | - | 8 | 8 | 1_259 | 616 | 582.0 | Topological domain | Extracellular |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000360798 | - | 8 | 8 | 281_649 | 616 | 582.0 | Topological domain | Cytoplasmic |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000361790 | - | 10 | 10 | 1_259 | 683 | 650.0 | Topological domain | Extracellular |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000361790 | - | 10 | 10 | 281_649 | 683 | 650.0 | Topological domain | Cytoplasmic |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000602122 | - | 9 | 9 | 1_259 | 664 | 630.0 | Topological domain | Extracellular |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000602122 | - | 9 | 9 | 281_649 | 664 | 630.0 | Topological domain | Cytoplasmic |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000347609 | - | 9 | 9 | 260_280 | 626 | 592.0 | Transmembrane | Helical |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000354900 | - | 9 | 9 | 260_280 | 666 | 631.0 | Transmembrane | Helical |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000360798 | - | 8 | 8 | 260_280 | 616 | 582.0 | Transmembrane | Helical |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000361790 | - | 10 | 10 | 260_280 | 683 | 650.0 | Transmembrane | Helical |
Hgene | LSR | chr19:35758865 | chr2:242202277 | ENST00000602122 | - | 9 | 9 | 260_280 | 664 | 630.0 | Transmembrane | Helical |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 1060_1134 | 0 | 1269.0 | Domain | KH 13 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 1135_1209 | 0 | 1269.0 | Domain | KH 14 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 158_229 | 0 | 1269.0 | Domain | KH 1 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 230_302 | 0 | 1269.0 | Domain | KH 2 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 303_371 | 0 | 1269.0 | Domain | KH 3 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 372_442 | 0 | 1269.0 | Domain | KH 4 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 443_514 | 0 | 1269.0 | Domain | KH 5 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 515_588 | 0 | 1269.0 | Domain | KH 6 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 589_660 | 0 | 1269.0 | Domain | KH 7 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 661_734 | 0 | 1269.0 | Domain | KH 8 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 735_807 | 0 | 1269.0 | Domain | KH 9 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 808_880 | 0 | 1269.0 | Domain | KH 10 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 881_979 | 0 | 1269.0 | Domain | KH 11 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000310931 | 0 | 28 | 980_1059 | 0 | 1269.0 | Domain | KH 12 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 1060_1134 | 0 | 1269.0 | Domain | KH 13 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 1135_1209 | 0 | 1269.0 | Domain | KH 14 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 158_229 | 0 | 1269.0 | Domain | KH 1 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 230_302 | 0 | 1269.0 | Domain | KH 2 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 303_371 | 0 | 1269.0 | Domain | KH 3 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 372_442 | 0 | 1269.0 | Domain | KH 4 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 443_514 | 0 | 1269.0 | Domain | KH 5 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 515_588 | 0 | 1269.0 | Domain | KH 6 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 589_660 | 0 | 1269.0 | Domain | KH 7 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 661_734 | 0 | 1269.0 | Domain | KH 8 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 735_807 | 0 | 1269.0 | Domain | KH 9 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 808_880 | 0 | 1269.0 | Domain | KH 10 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 881_979 | 0 | 1269.0 | Domain | KH 11 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391975 | 0 | 28 | 980_1059 | 0 | 1269.0 | Domain | KH 12 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 1060_1134 | 0 | 1269.0 | Domain | KH 13 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 1135_1209 | 0 | 1269.0 | Domain | KH 14 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 158_229 | 0 | 1269.0 | Domain | KH 1 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 230_302 | 0 | 1269.0 | Domain | KH 2 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 303_371 | 0 | 1269.0 | Domain | KH 3 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 372_442 | 0 | 1269.0 | Domain | KH 4 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 443_514 | 0 | 1269.0 | Domain | KH 5 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 515_588 | 0 | 1269.0 | Domain | KH 6 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 589_660 | 0 | 1269.0 | Domain | KH 7 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 661_734 | 0 | 1269.0 | Domain | KH 8 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 735_807 | 0 | 1269.0 | Domain | KH 9 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 808_880 | 0 | 1269.0 | Domain | KH 10 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 881_979 | 0 | 1269.0 | Domain | KH 11 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000391976 | 0 | 28 | 980_1059 | 0 | 1269.0 | Domain | KH 12 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 1060_1134 | 0 | 1236.0 | Domain | KH 13 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 1135_1209 | 0 | 1236.0 | Domain | KH 14 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 158_229 | 0 | 1236.0 | Domain | KH 1 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 230_302 | 0 | 1236.0 | Domain | KH 2 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 303_371 | 0 | 1236.0 | Domain | KH 3 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 372_442 | 0 | 1236.0 | Domain | KH 4 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 443_514 | 0 | 1236.0 | Domain | KH 5 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 515_588 | 0 | 1236.0 | Domain | KH 6 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 589_660 | 0 | 1236.0 | Domain | KH 7 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 661_734 | 0 | 1236.0 | Domain | KH 8 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 735_807 | 0 | 1236.0 | Domain | KH 9 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 808_880 | 0 | 1236.0 | Domain | KH 10 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 881_979 | 0 | 1236.0 | Domain | KH 11 | |
Tgene | HDLBP | chr19:35758865 | chr2:242202277 | ENST00000427183 | 0 | 28 | 980_1059 | 0 | 1236.0 | Domain | KH 12 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for LSR-HDLBP |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>50240_50240_1_LSR-HDLBP_LSR_chr19_35758865_ENST00000354900_HDLBP_chr2_242202277_ENST00000310931_length(transcript)=6003nt_BP=2105nt CGGGTGGAGTGTGGCTCGGAGGACCGCGGCGGGTCAAGCACCTTTCTCCCCCATATCTGAAAGCATGCCCTTTGTCCACGTCGTTTACGC TCATTAAAACTTCCAGAATGCAACAGGACGGACTTGGAGTAGGGACAAGGAACGGAAGTGGGAAGGGGAGGAGCGTGCACCCCTCCTGGC CTTGGTGCGCGCCGCGCCCCCTAAGGTACTTTGGAAGGGACGCGCGGGCCAGACGCGCCCAGACGGCCGCGATGGCGCTGTTGGCCGGCG GGCTCTCCAGAGGGCTGGGCTCCCACCCGGCCGCCGCAGGCCGGGACGCGGTCGTCTTCGTGTGGCTTCTGCTTAGCACCTGGTGCACAG CTCCTGCCAGGGCCATCCAGGTGACCGTGTCCAACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCTGCCCTGTACCTACCAGA TGACCTCGACCCCCACGCAACCCATCGTCATCTGGAAGTACAAGTCTTTCTGCCGGGACCGCATCGCCGATGCCTTCTCCCCGGCCAGCG TCGACAACCAGCTCAATGCCCAGCTGGCAGCCGGGAACCCAGGCTACAACCCCTACGTTGAGTGCCAGGACAGCGTGCGCACCGTCAGGG TCGTGGCCACCAAGCAGGGCAACGCTGTGACCCTGGGAGATTACTACCAGGGCCGGAGGATTACCATCACCGGAAATGCTGACCTGACCT TTGACCAGACGGCGTGGGGGGACAGTGGTGTGTATTACTGCTCCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCCTACGCAG AGCTCATCGTCCTTGACTGGCTCTTCGTGGTTGTGGTATGCCTGGCTGCCTTCCTCATCTTCCTCCTCCTGGGCATCTGCTGGTGCCAGT GCTGCCCGCACACTTGCTGCTGCTACGTCAGGTGCCCCTGCTGCCCAGACAAGTGCTGCTGCCCCGAGGCCCTGTATGCCGCCGGCAAAG CAGCCACCTCAGGTGTTCCCAGCATTTATGCCCCCAGCACCTATGCCCACCTGTCTCCCGCCAAGACCCCACCCCCACCAGCTATGATTC CCATGGGCCCTGCCTACAACGGGTACCCTGGAGGATACCCTGGAGACGTTGACAGGAGTAGCTCAGCTGGTGGCCAAGGCTCCTATGTAC CCCTGCTTCGGGACACGGACAGCAGTGTGGCCTCTGAAGTCCGCAGTGGCTACAGGATTCAGGCCAGCCAGCAGGACGACTCCATGCGGG TCCTGTACTACATGGAGAAGGAGCTGGCCAACTTCGACCCTTCTCGACCTGGCCCCCCCAGTGGCCGTGTGGAGCGGGCCATGAGTGAAG TCACCTCCCTCCACGAGGACGACTGGCGATCTCGGCCTTCCCGGGGCCCTGCCCTCACCCCGATCCGGGATGAGGAGTGGGGTGGCCACT CCCCCCGGAGTCCCAGGGGATGGGACCAGGAGCCCGCCAGGGAGCAGGCAGGCGGGGGCTGGCGGGCCAGGCGGCCCCGGGCCCGCTCCG TGGACGCCCTGGACGACCTCACCCCGCCGAGCACCGCCGAGTCAGGGAGCAGGTCTCCCACGAGTAATGGTGGGAGAAGCCGGGCCTACA TGCCCCCGCGGAGCCGCAGCCGGGACGACCTCTATGACCAAGACGACTCGAGGGACTTCCCACGCTCCCGGGACCCCCACTACGACGACT TCAGGTCTCGGGAGCGCCCTCCTGCCGACCCCAGGTCCCACCACCACCGTACCCGGGACCCTCGGGACAACGGCTCCAGGTCCGGGGACC TCCCCTATGATGGGCGGCTACTGGAGGAGGCTGTGAGGAAGAAGGGGTCGGAGGAGAGGAGGAGACCCCACAAGGAGGAGGAGGAAGAGG CCTACTACCCGCCCGCGCCGCCCCCGTACTCGGAGACCGACTCGCAGGCGTCCCGAGAGCGCAGGCTCAAGAAGAACTTGGCCCTGAGTC GGGAAAGTTTAGTCGTCTGATCTGACGTTTTCTACGTAGCTTTTGTATTTTTTTTTTTAATTTGAAGGAACACTGATGAAGCCCTGCCAT ACCCCTCCCGAGTCTAATAAAACGTATAATCACAAGCTCCTGACATGAGCAGCTCTGAGGAATTTCCCAGCTTTGGGGCTCAGGTGGCTC CCAAGACCCTCCCTTGGGGCCCCAAACGATAATGATCAAAAAGAACAGAACCCTCTCCAGCCTGCTGACCCAAACCCAACCACACAATGG TTTGTCTCAATCTGACCCAGCGGCTGGACCCTCCGTAAATTGTTGACGCTCTTCCCCCTTCCCGAGGTCCCGCAGGGAGCCTAGCGCCTG GCTGTGTGTGCGGCCGCTCCTCCAGGCCTGGCCGTGCCCGCTCAGGACCTGCTCCACTGTTTAACACTAAACCAAGGTCATGAGCATTCG TGCTAAGATAACAGACTCCAGCTCCTGGTCCACCCGGCATGTCAGTCAGCACTCTGGCCTTCATCACGAGAGCTCCGCAGCCGTGGCTAG GATTCCACTTCCTGTGTCATGACCTCAGGAAATAAACGTCCTTGACTTTATAAAAGCCAAACTAGCTGACGTGGTGGACAGTGAGGCGCT GCAGGTATACATGAAACCCCCAGCACACGAAGAGGCCAAGGCACCTTCCAGAGGCTTTGTGGTGCGGGACGCACCCTGGACCGCCAGCAG CAGTGAGAAGGTGGACATTCGCTTCCCACAGAGCGGAGCCCCAGACCCCAACTGCGTCACTGTGACGGGGCTCCCAGAGAATGTGGAGGA AGCCATCGACCACATCCTCAATCTGGAGGAGGAATACCCCCAGGACCAAATTACCATCACAGGGTACGAAAAGAACACAGAAGCTGCCAG GGATGCTATACTGAGAATTGTGGGTGAACTTGAGCAGATGGTTTCTGAGGACGTCCCGCTGGACCACCGCGTTCACGCCCGCATCATTGG TGCCCGCGGCAAAGCCATTCGCAAAATCATGGACGAATTCAAGGCTTTAAGGAGTTTTAAGCTGAGTGTCACTGTAGACCCCAAATACCA TCCCAAGATTATCGGGAGAAAGGGGGCAGTAATTACCCAAATCCGGTTGGAGCATGACGTGAACATCCAGTTTCCTGATAAGGACGATGG GAACCAGGTGAACATACATGTCCCGGCACCTGAGCTGCAGTCTGACATCATCGCCATCACGGGCCTCGCTGCAAATTTGGACCGGGCCAA GGCTGGACTGCTGGAGCGTGTGAAGGAGCTACAGGCCGAGCAGGAGGACCGGGCATTGGTTCCTGTCACCATTGAAGTAGAGGTGCCCTT TGACCTTCACCGTTACGTTATTGGGCAGAAAGGAAGTGGGATCCGCAAGATGATGGATGAGTTTGAGTTCACAGTACAGAGCCAGTTGTC CAGGAGAATGGGGACGAAGCTGGGGAGGGGAGAGAGGCTAAAGATTGTGACCCCGGCTCTCCAAGGAGGTGTGACATCATCATCATCTCT GGCCGGAAAGAAAAGTGTGAGGCTGCCAAGGAAGCTCTGGAGGAAGCTCAGGTGACATTAGAATGTGCTATACCCCAGAAATTCCATCGA TCTGTCATGGGCCCCAAAGGTTCCAGAATCCAGCAGATTACTCGGGATTTCAGTGTTCAAATTAAATTCCCAGACAGAGAGGAGAACGCA GGATAATGTGGTGGAAGACTCCATGCTGGTGGACCCCAAGCACCACCGCCACTTCGTCATCCGCAGAGGCCAGGTCTTGCGGGAGATTGC TGAAGAGTATGGCGGGGTGATGGTCAGCTTCCCACGCTCTGGCACACAGAGCGACAAAGTCACCCTCAAGGGCGCCAAGGACTGTGTGGA GGCAGCCAAGAAACGCATTCAGGAGATCATTGAGGACCTGCAAACCAAGAGTTTCACTGTTGACATCCGCGCCAAGCCAGAATACCACAA ATTCCTCATCGGCAAGGGGGGCGGCAAAATTCGCAAGGTGCGCGACAGCACTGGAGCACGTGTCATCTTCCCTGCGGCTGAGGACAAGGA CCAGGACCTGATCACCATCATTGGAAAGGAGGACGCCGTCCGAGAGGCACAGAAGGAGCTGGAGGCCTTGATCCAAAACCTGGCCAACAT AGCCGAGGTAGAGGTCTCCATCCCTGCCAAGCTGCACAACTCCCTCATTGGCACCAAGGGCCGTCTGATCCGCTCCATCATGGAGGAGTG CGGCGGGGTCCACATTCACTTTCCCGTGGAAGGTTCAGGAAGCGACACCGTTGTTATCAGGGGCCCTTCCTCGGATGTGGAGAAGGCCAA GAAGCAGCTCCTGCATCTGGCGGAGGAGAAGATTCGTGAAGAAAGCAACACCAAAATCGACCTTCCAGCAGAGAATAGCAATTCAGAGAC CATTATCATCACAGGCAAGCGAGCCAACTGCGAAGCTGCCCGGAGCAGGATTCTGTCTATTCAGAAAGACCTGGTGGAAAATAGCTATTC AATTTCTGTTCCGATCTTCAAACAGTTTCACAAGAATATCATTGGGAAAGGAGGCGCAAACATTAAAAAGGTCATCATTAACTTTCCAGA CCCAGCACAAAAAAGTGACATTGTCCAGCTCAGAGGACCTAAGAATGAGGTGGAAAAATGCACAAAATACATGCAGAAGATGGTGGCAGA TCTGGAAAATGAGCGTACCAAGGATCTAATCATTGAGCAAAGATTTCATCGCACAATCATTGGGCAGAAGGGTGAACGGATCCGTGAAAT TCGTGACAAATTCCCAGAGTAAACAGAATCAAAGACCAGTACAAGGTGTCCGTGCGCATCCCTCCTGACAGTGAGAAGAGCAATTTGATC CGCATCGAGGGGGACCCACAGGGCGTGCAGCAGGCCAAGCGAGAGCTGCTGGAGCTTGCATCTCGCATGATTAACCGGATGGACTATGTG GAGATCAACATCGACCACAAGTTCCACAGGCACCTCATTGGGAAGAGCGGTGCCAACAGTTCACATCGAGTTCACAGAGGGCGAAGACAA GATCACCCTGGAGGGCCCTACAGAGGATGTCAATGTGGCCCAGGAACAGATAGAAGGCATGGTCAAAGATTTGGCCAATAGCTTCACCGT CTCCTCTGTCGCCGCCCCTTCCTGGCTTCACCGTTTCATCATTGGCAAGAAAGGGCAGAACCTGGCCAAAATCACTCAGCAGATGCCAAA GAAAAAGAAGACTACAACCATTGCAGTGGAAGTGAAGAAATCCCAACACAAGTATGTCATTGGGCCCAAGGGCAATTCATTGCAGGAGAT CCTTGAGAGAACTGGAGTTTCCGTTGAGATCCCACCCTCAGACAGCATCTCTGAGACTGTAATACTTCGAGGCGAACCTGAAAAGTTAGG TCAGGCGTTGACTGAAGTCTATGCCAAGGACAAACGTGCTGTGGAGAGGCTAGAAGTAGAAAAGGCATTCCACCCCTTCATCGCTGGGCC GTATAATAGACTGGTTGGCGAGATCATGCAGGAGACAGGCACGCGCATCAACATCCCCCCACCCAGCGTGAACCGGACAGAGATTGTCTT CACTGGAGAGAAGGAACAGTTGGCTCAGGCTGTGGCTCGCATCAAGAAGATTTATGAGGAGAAGGCCTCAGCAACTGTTGCCATTCCCAA AGAACACCATCGCTTTGTTATTGGCAAAAATGGAGAGAAACTGCAAGACTTGGAGCTAAAAACTGCAACCAAAATCCAGATCCCACGCCC AGATGACCCCAGCAATCAGATCAAGATCACTGGCACCAAAGAGGGCATCGAGAAAGCTCGCCATGAAGTCTTACTCATCTCTGCCGAGCA GAAGCAAAAATCTGCCTTGAGATCATGCAGAGAACTGGTGCTCACTTGGAGCTGTCTTTGGCCAAAGACCAAGGCCTCTCCATCATGGTG >50240_50240_1_LSR-HDLBP_LSR_chr19_35758865_ENST00000354900_HDLBP_chr2_242202277_ENST00000310931_length(amino acids)=647AA_BP= MKACPLSTSFTLIKTSRMQQDGLGVGTRNGSGKGRSVHPSWPWCAPRPLRYFGRDARARRAQTAAMALLAGGLSRGLGSHPAAAGRDAVV FVWLLLSTWCTAPARAIQVTVSNPYHVVILFQPVTLPCTYQMTSTPTQPIVIWKYKSFCRDRIADAFSPASVDNQLNAQLAAGNPGYNPY VECQDSVRTVRVVATKQGNAVTLGDYYQGRRITITGNADLTFDQTAWGDSGVYYCSVVSAQDLQGNNEAYAELIVLDWLFVVVVCLAAFL IFLLLGICWCQCCPHTCCCYVRCPCCPDKCCCPEALYAAGKAATSGVPSIYAPSTYAHLSPAKTPPPPAMIPMGPAYNGYPGGYPGDVDR SSSAGGQGSYVPLLRDTDSSVASEVRSGYRIQASQQDDSMRVLYYMEKELANFDPSRPGPPSGRVERAMSEVTSLHEDDWRSRPSRGPAL TPIRDEEWGGHSPRSPRGWDQEPAREQAGGGWRARRPRARSVDALDDLTPPSTAESGSRSPTSNGGRSRAYMPPRSRSRDDLYDQDDSRD FPRSRDPHYDDFRSRERPPADPRSHHHRTRDPRDNGSRSGDLPYDGRLLEEAVRKKGSEERRRPHKEEEEEAYYPPAPPPYSETDSQASR -------------------------------------------------------------- >50240_50240_2_LSR-HDLBP_LSR_chr19_35758865_ENST00000354900_HDLBP_chr2_242202277_ENST00000391975_length(transcript)=7951nt_BP=2105nt CGGGTGGAGTGTGGCTCGGAGGACCGCGGCGGGTCAAGCACCTTTCTCCCCCATATCTGAAAGCATGCCCTTTGTCCACGTCGTTTACGC TCATTAAAACTTCCAGAATGCAACAGGACGGACTTGGAGTAGGGACAAGGAACGGAAGTGGGAAGGGGAGGAGCGTGCACCCCTCCTGGC CTTGGTGCGCGCCGCGCCCCCTAAGGTACTTTGGAAGGGACGCGCGGGCCAGACGCGCCCAGACGGCCGCGATGGCGCTGTTGGCCGGCG GGCTCTCCAGAGGGCTGGGCTCCCACCCGGCCGCCGCAGGCCGGGACGCGGTCGTCTTCGTGTGGCTTCTGCTTAGCACCTGGTGCACAG CTCCTGCCAGGGCCATCCAGGTGACCGTGTCCAACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCTGCCCTGTACCTACCAGA TGACCTCGACCCCCACGCAACCCATCGTCATCTGGAAGTACAAGTCTTTCTGCCGGGACCGCATCGCCGATGCCTTCTCCCCGGCCAGCG TCGACAACCAGCTCAATGCCCAGCTGGCAGCCGGGAACCCAGGCTACAACCCCTACGTTGAGTGCCAGGACAGCGTGCGCACCGTCAGGG TCGTGGCCACCAAGCAGGGCAACGCTGTGACCCTGGGAGATTACTACCAGGGCCGGAGGATTACCATCACCGGAAATGCTGACCTGACCT TTGACCAGACGGCGTGGGGGGACAGTGGTGTGTATTACTGCTCCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCCTACGCAG AGCTCATCGTCCTTGACTGGCTCTTCGTGGTTGTGGTATGCCTGGCTGCCTTCCTCATCTTCCTCCTCCTGGGCATCTGCTGGTGCCAGT GCTGCCCGCACACTTGCTGCTGCTACGTCAGGTGCCCCTGCTGCCCAGACAAGTGCTGCTGCCCCGAGGCCCTGTATGCCGCCGGCAAAG CAGCCACCTCAGGTGTTCCCAGCATTTATGCCCCCAGCACCTATGCCCACCTGTCTCCCGCCAAGACCCCACCCCCACCAGCTATGATTC CCATGGGCCCTGCCTACAACGGGTACCCTGGAGGATACCCTGGAGACGTTGACAGGAGTAGCTCAGCTGGTGGCCAAGGCTCCTATGTAC CCCTGCTTCGGGACACGGACAGCAGTGTGGCCTCTGAAGTCCGCAGTGGCTACAGGATTCAGGCCAGCCAGCAGGACGACTCCATGCGGG TCCTGTACTACATGGAGAAGGAGCTGGCCAACTTCGACCCTTCTCGACCTGGCCCCCCCAGTGGCCGTGTGGAGCGGGCCATGAGTGAAG TCACCTCCCTCCACGAGGACGACTGGCGATCTCGGCCTTCCCGGGGCCCTGCCCTCACCCCGATCCGGGATGAGGAGTGGGGTGGCCACT CCCCCCGGAGTCCCAGGGGATGGGACCAGGAGCCCGCCAGGGAGCAGGCAGGCGGGGGCTGGCGGGCCAGGCGGCCCCGGGCCCGCTCCG TGGACGCCCTGGACGACCTCACCCCGCCGAGCACCGCCGAGTCAGGGAGCAGGTCTCCCACGAGTAATGGTGGGAGAAGCCGGGCCTACA TGCCCCCGCGGAGCCGCAGCCGGGACGACCTCTATGACCAAGACGACTCGAGGGACTTCCCACGCTCCCGGGACCCCCACTACGACGACT TCAGGTCTCGGGAGCGCCCTCCTGCCGACCCCAGGTCCCACCACCACCGTACCCGGGACCCTCGGGACAACGGCTCCAGGTCCGGGGACC TCCCCTATGATGGGCGGCTACTGGAGGAGGCTGTGAGGAAGAAGGGGTCGGAGGAGAGGAGGAGACCCCACAAGGAGGAGGAGGAAGAGG CCTACTACCCGCCCGCGCCGCCCCCGTACTCGGAGACCGACTCGCAGGCGTCCCGAGAGCGCAGGCTCAAGAAGAACTTGGCCCTGAGTC GGGAAAGTTTAGTCGTCTGATCTGACGTTTTCTACGTAGCTTTTGTATTTTTTTTTTTAATTTGAAGGAACACTGATGAAGCCCTGCCAT ACCCCTCCCGAGTCTAATAAAACGTATAATCACAAGCTCCTGACATGAGCAGCTCTGAGGAATTTCCCAGCTTTGGGGCTCAGGTGGCTC CCAAGACCCTCCCTTGGGGCCCCAAACGATAATGATCAAAAAGAACAGAACCCTCTCCAGCCTGCTGACCCAAACCCAACCACACAATGG TTTGTCTCAATCTGACCCAGCGGCTGGACCCTCCGTAAATTGTTGACGCTCTTCCCCCTTCCCGAGGTCCCGCAGGGAGCCTAGCGCCTG GCTGTGTGTGCGGCCGCTCCTCCAGGCCTGGCCGTGCCCGCTCAGGACCTGCTCCACTGTTTAACACTAAACCAAGGTCATGAGCATTCG TGCTAAGATAACAGACTCCAGCTCCTGGTCCACCCGGCATGTCAGTCAGCACTCTGGCCTTCATCACGAGAGCTCCGCAGCCGTGGCTAG GATTCCACTTCCTGTGTCATGACCTCAGGAAATAAACGTCCTTGACTTTATAAAAGCCAAACGTTTGCCCTCTTCCTTTCCCACCTCCCT CCTGCCAGTTTCCCTTGGTCCAGACAGTCCTGTTTGTGGAGTGCAATCAGCCTCCTCCAGCTGCCAGAGCGCCTCAGCACAGGTGTCAGG GTGCAAGGAAGACCTGGCAATGGACAGCAGGAGGCAGGTTCCTGGAGCTGGGGGGTGACCTGAGAGGCAGAGGGTGACGGGTTCTCAGGC AGTCCTGATTTTACCTGCCGTGGGGTCTGAAAGCACCAAGGGTCCCTGCCCCTACCTCCACTGCCAGACCCTCAGCCTGAGGTCTGGTGA GTGGAGCCTGGAGGCAAGGTGGTAGGCACCATCTGGGTCCCCTGTGGCCGTCACAGTGTCTGCTGTGATTGAGATGCGCACAGGTTGGGG GAGGTAGGGCCTTACGCTTGTCCTCAGTGGGGGCAGTTTGCCTTAGATGACAGCTGGGCTCTTCTTCACACCACCTGCAGCCCCTCCCTG CCCCTGCCCTAGCTGCTGTGTGTTCAGTTGCCTTCTTTCTACCTCAGCCGGCGTGGAGTGGTCTCTGTGCAGTTAGTGCCACCCCACACA CCCGTCTCTTGATTGAGATGTTTCTGGTGGTTATGGGTTTCCCGTGGAGCTGGGGGTGGGCGCCGTGTACCTAAGCTGGAGGCTGGCGCT CTCCCTCAGCACAGGTGGGTCAGTGGCCAGCAGGCCCATCTGGAGTGGGAGTGGGCACTTCCACCCCGCCCACAGGCCATCCGGCTGTGC AGGCCAGCCCCTAGGAGCAGGTCCCGGGTGACTGGCAGTTTTCACGGTCTAGGGCCGAGACGATGGCATGGGGCCTAGAGCATGAGGTAG AGCAGAATGCAGACCACGCCGCTGGATGCCGAGAGACCCTGCTCTCCGAGGGAGGCATCTGTGTCATGCTGTGAGGGCTGAGGACGGGGC CCTAGTCTCTGGTTTTCTGGTCTTAACATCCTTATCTGTGTCCGCCACGGAGGTGACTGAGCTGCTAGCGAGTTGTCCTGTCCCAGGTAC TTGAGTTTTGGAAAAGCTGACTCACGCCCATCCATCTCACAGCCCTTCCCTGGGGACAGTCGCTTCCGCCTTGACACCTCACTCTCAGTT GAATAACTCAAGCTTGGTCATCTTCAGACTCGAATTCTTGAGTAGACCCAGACGGCTTAGCCCAAGTCTAGTTGCAGCTGCCTCGGCAAG TCCCCATTTGCTCAGGCAGCCCTGAATGGGCCTGTTTACAGGAATGGTAAATTGGGATTGGAAGGAATATAGCTTCCAGCTTCATAGGCT AGGGTGACCACGGCTTAGGAAACAGGGAAAGAAAGCAAGGCCCTTTTCCTGCCTTTCCCGGGATCTGTCTACTCCACCTCCACGGGGGAG GCCAGTGGGGAAGGGCTGTCACCTCTTCCCCATCTGCATGAGTTCTGGAACTCTGTCCTGTTGGCTGCTTGCTTCCAGCTCCCCCCAATC TCCATCGCAGCGGGTTCCTCCTGTCTTTTCTACAGTGTCATAAAACATCCTGCCCCTACCCTCTCCCAAAGGTCAATTTTAATTCTCACC AAGTTTTGCACATCTCTGTATGTCGCTTGATGTCTTAGACGCGAGCCCTTTCCTAAACTGTTCAGCGCTCTCTTTTCCTTTGGGTGGTTG TTGCAAGGGTGATGACATGACTGTCCCCAGGCCTGTCTCCCTGAAGCGTCTGTGCTGTCAGGACAGCCCTGGGCAGAGATGAGGCAGGGG TGAGGCGTGCGTGTGCTTTTCCTCCTTGTTGGATGTCTTCCATATCATCTGTTTCCATAGCTACAATCCATCCCTTGGCCTTAACTTTGG AATTTGGAGATTATATGCAAACATGTGTAAAGGCTCATGAATATGGATGACACTGGAATTTTATAAATTCTAAAATAAAACCCGAAACCA GATGTAGCATGCTGGGACTCATTTTGTCACTAGCTGACGTGGTGGACAGTGAGGCGCTGCAGGTATACATGAAACCCCCAGCACACGAAG AGGCCAAGGCACCTTCCAGAGGCTTTGTGGTGCGGGACGCACCCTGGACCGCCAGCAGCAGTGAGAAGGTGGACATTCGCTTCCCACAGA GCGGAGCCCCAGACCCCAACTGCGTCACTGTGACGGGGCTCCCAGAGAATGTGGAGGAAGCCATCGACCACATCCTCAATCTGGAGGAGG AATACCCCCAGGACCAAATTACCATCACAGGGTACGAAAAGAACACAGAAGCTGCCAGGGATGCTATACTGAGAATTGTGGGTGAACTTG AGCAGATGGTTTCTGAGGACGTCCCGCTGGACCACCGCGTTCACGCCCGCATCATTGGTGCCCGCGGCAAAGCCATTCGCAAAATCATGG ACGAATTCAAGGCTTTAAGGAGTTTTAAGCTGAGTGTCACTGTAGACCCCAAATACCATCCCAAGATTATCGGGAGAAAGGGGGCAGTAA TTACCCAAATCCGGTTGGAGCATGACGTGAACATCCAGTTTCCTGATAAGGACGATGGGAACCAGGTGAACATACATGTCCCGGCACCTG AGCTGCAGTCTGACATCATCGCCATCACGGGCCTCGCTGCAAATTTGGACCGGGCCAAGGCTGGACTGCTGGAGCGTGTGAAGGAGCTAC AGGCCGAGCAGGAGGACCGGGCATTGGTTCCTGTCACCATTGAAGTAGAGGTGCCCTTTGACCTTCACCGTTACGTTATTGGGCAGAAAG GAAGTGGGATCCGCAAGATGATGGATGAGTTTGAGTTCACAGTACAGAGCCAGTTGTCCAGGAGAATGGGGACGAAGCTGGGGAGGGGAG AGAGGCTAAAGATTGTGACCCCGGCTCTCCAAGGAGGTGTGACATCATCATCATCTCTGGCCGGAAAGAAAAGTGTGAGGCTGCCAAGGA AGCTCTGGAGGAAGCTCAGGTGACATTAGAATGTGCTATACCCCAGAAATTCCATCGATCTGTCATGGGCCCCAAAGGTTCCAGAATCCA GCAGATTACTCGGGATTTCAGTGTTCAAATTAAATTCCCAGACAGAGAGGAGAACGCAGGATAATGTGGTGGAAGACTCCATGCTGGTGG ACCCCAAGCACCACCGCCACTTCGTCATCCGCAGAGGCCAGGTCTTGCGGGAGATTGCTGAAGAGTATGGCGGGGTGATGGTCAGCTTCC CACGCTCTGGCACACAGAGCGACAAAGTCACCCTCAAGGGCGCCAAGGACTGTGTGGAGGCAGCCAAGAAACGCATTCAGGAGATCATTG AGGACCTGCAAACCAAGAGTTTCACTGTTGACATCCGCGCCAAGCCAGAATACCACAAATTCCTCATCGGCAAGGGGGGCGGCAAAATTC GCAAGGTGCGCGACAGCACTGGAGCACGTGTCATCTTCCCTGCGGCTGAGGACAAGGACCAGGACCTGATCACCATCATTGGAAAGGAGG ACGCCGTCCGAGAGGCACAGAAGGAGCTGGAGGCCTTGATCCAAAACCTGGCCAACATAGCCGAGGTAGAGGTCTCCATCCCTGCCAAGC TGCACAACTCCCTCATTGGCACCAAGGGCCGTCTGATCCGCTCCATCATGGAGGAGTGCGGCGGGGTCCACATTCACTTTCCCGTGGAAG GTTCAGGAAGCGACACCGTTGTTATCAGGGGCCCTTCCTCGGATGTGGAGAAGGCCAAGAAGCAGCTCCTGCATCTGGCGGAGGAGAAGA TTCGTGAAGAAAGCAACACCAAAATCGACCTTCCAGCAGAGAATAGCAATTCAGAGACCATTATCATCACAGGCAAGCGAGCCAACTGCG AAGCTGCCCGGAGCAGGATTCTGTCTATTCAGAAAGACCTGGTGGAAAATAGCTATTCAATTTCTGTTCCGATCTTCAAACAGTTTCACA AGAATATCATTGGGAAAGGAGGCGCAAACATTAAAAAGGTCATCATTAACTTTCCAGACCCAGCACAAAAAAGTGACATTGTCCAGCTCA GAGGACCTAAGAATGAGGTGGAAAAATGCACAAAATACATGCAGAAGATGGTGGCAGATCTGGAAAATGAGCGTACCAAGGATCTAATCA TTGAGCAAAGATTTCATCGCACAATCATTGGGCAGAAGGGTGAACGGATCCGTGAAATTCGTGACAAATTCCCAGAGTAAACAGAATCAA AGACCAGTACAAGGTGTCCGTGCGCATCCCTCCTGACAGTGAGAAGAGCAATTTGATCCGCATCGAGGGGGACCCACAGGGCGTGCAGCA GGCCAAGCGAGAGCTGCTGGAGCTTGCATCTCGCATGATTAACCGGATGGACTATGTGGAGATCAACATCGACCACAAGTTCCACAGGCA CCTCATTGGGAAGAGCGGTGCCAACAGTTCACATCGAGTTCACAGAGGGCGAAGACAAGATCACCCTGGAGGGCCCTACAGAGGATGTCA ATGTGGCCCAGGAACAGATAGAAGGCATGGTCAAAGATTTGGCCAATAGCTTCACCGTCTCCTCTGTCGCCGCCCCTTCCTGGCTTCACC GTTTCATCATTGGCAAGAAAGGGCAGAACCTGGCCAAAATCACTCAGCAGATGCCAAAGAAAAAGAAGACTACAACCATTGCAGTGGAAG TGAAGAAATCCCAACACAAGTATGTCATTGGGCCCAAGGGCAATTCATTGCAGGAGATCCTTGAGAGAACTGGAGTTTCCGTTGAGATCC CACCCTCAGACAGCATCTCTGAGACTGTAATACTTCGAGGCGAACCTGAAAAGTTAGGTCAGGCGTTGACTGAAGTCTATGCCAAGGACA AACGTGCTGTGGAGAGGCTAGAAGTAGAAAAGGCATTCCACCCCTTCATCGCTGGGCCGTATAATAGACTGGTTGGCGAGATCATGCAGG AGACAGGCACGCGCATCAACATCCCCCCACCCAGCGTGAACCGGACAGAGATTGTCTTCACTGGAGAGAAGGAACAGTTGGCTCAGGCTG TGGCTCGCATCAAGAAGATTTATGAGGAGAAGGCCTCAGCAACTGTTGCCATTCCCAAAGAACACCATCGCTTTGTTATTGGCAAAAATG GAGAGAAACTGCAAGACTTGGAGCTAAAAACTGCAACCAAAATCCAGATCCCACGCCCAGATGACCCCAGCAATCAGATCAAGATCACTG GCACCAAAGAGGGCATCGAGAAAGCTCGCCATGAAGTCTTACTCATCTCTGCCGAGCAGAAGCAAAAATCTGCCTTGAGATCATGCAGAG AACTGGTGCTCACTTGGAGCTGTCTTTGGCCAAAGACCAAGGCCTCTCCATCATGGTGTCAGGAAAGCTGGATGCTGTCATGAAAGCTCG >50240_50240_2_LSR-HDLBP_LSR_chr19_35758865_ENST00000354900_HDLBP_chr2_242202277_ENST00000391975_length(amino acids)=647AA_BP= MKACPLSTSFTLIKTSRMQQDGLGVGTRNGSGKGRSVHPSWPWCAPRPLRYFGRDARARRAQTAAMALLAGGLSRGLGSHPAAAGRDAVV FVWLLLSTWCTAPARAIQVTVSNPYHVVILFQPVTLPCTYQMTSTPTQPIVIWKYKSFCRDRIADAFSPASVDNQLNAQLAAGNPGYNPY VECQDSVRTVRVVATKQGNAVTLGDYYQGRRITITGNADLTFDQTAWGDSGVYYCSVVSAQDLQGNNEAYAELIVLDWLFVVVVCLAAFL IFLLLGICWCQCCPHTCCCYVRCPCCPDKCCCPEALYAAGKAATSGVPSIYAPSTYAHLSPAKTPPPPAMIPMGPAYNGYPGGYPGDVDR SSSAGGQGSYVPLLRDTDSSVASEVRSGYRIQASQQDDSMRVLYYMEKELANFDPSRPGPPSGRVERAMSEVTSLHEDDWRSRPSRGPAL TPIRDEEWGGHSPRSPRGWDQEPAREQAGGGWRARRPRARSVDALDDLTPPSTAESGSRSPTSNGGRSRAYMPPRSRSRDDLYDQDDSRD FPRSRDPHYDDFRSRERPPADPRSHHHRTRDPRDNGSRSGDLPYDGRLLEEAVRKKGSEERRRPHKEEEEEAYYPPAPPPYSETDSQASR -------------------------------------------------------------- >50240_50240_3_LSR-HDLBP_LSR_chr19_35758865_ENST00000354900_HDLBP_chr2_242202277_ENST00000391976_length(transcript)=6003nt_BP=2105nt CGGGTGGAGTGTGGCTCGGAGGACCGCGGCGGGTCAAGCACCTTTCTCCCCCATATCTGAAAGCATGCCCTTTGTCCACGTCGTTTACGC TCATTAAAACTTCCAGAATGCAACAGGACGGACTTGGAGTAGGGACAAGGAACGGAAGTGGGAAGGGGAGGAGCGTGCACCCCTCCTGGC CTTGGTGCGCGCCGCGCCCCCTAAGGTACTTTGGAAGGGACGCGCGGGCCAGACGCGCCCAGACGGCCGCGATGGCGCTGTTGGCCGGCG GGCTCTCCAGAGGGCTGGGCTCCCACCCGGCCGCCGCAGGCCGGGACGCGGTCGTCTTCGTGTGGCTTCTGCTTAGCACCTGGTGCACAG CTCCTGCCAGGGCCATCCAGGTGACCGTGTCCAACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCTGCCCTGTACCTACCAGA TGACCTCGACCCCCACGCAACCCATCGTCATCTGGAAGTACAAGTCTTTCTGCCGGGACCGCATCGCCGATGCCTTCTCCCCGGCCAGCG TCGACAACCAGCTCAATGCCCAGCTGGCAGCCGGGAACCCAGGCTACAACCCCTACGTTGAGTGCCAGGACAGCGTGCGCACCGTCAGGG TCGTGGCCACCAAGCAGGGCAACGCTGTGACCCTGGGAGATTACTACCAGGGCCGGAGGATTACCATCACCGGAAATGCTGACCTGACCT TTGACCAGACGGCGTGGGGGGACAGTGGTGTGTATTACTGCTCCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCCTACGCAG AGCTCATCGTCCTTGACTGGCTCTTCGTGGTTGTGGTATGCCTGGCTGCCTTCCTCATCTTCCTCCTCCTGGGCATCTGCTGGTGCCAGT GCTGCCCGCACACTTGCTGCTGCTACGTCAGGTGCCCCTGCTGCCCAGACAAGTGCTGCTGCCCCGAGGCCCTGTATGCCGCCGGCAAAG CAGCCACCTCAGGTGTTCCCAGCATTTATGCCCCCAGCACCTATGCCCACCTGTCTCCCGCCAAGACCCCACCCCCACCAGCTATGATTC CCATGGGCCCTGCCTACAACGGGTACCCTGGAGGATACCCTGGAGACGTTGACAGGAGTAGCTCAGCTGGTGGCCAAGGCTCCTATGTAC CCCTGCTTCGGGACACGGACAGCAGTGTGGCCTCTGAAGTCCGCAGTGGCTACAGGATTCAGGCCAGCCAGCAGGACGACTCCATGCGGG TCCTGTACTACATGGAGAAGGAGCTGGCCAACTTCGACCCTTCTCGACCTGGCCCCCCCAGTGGCCGTGTGGAGCGGGCCATGAGTGAAG TCACCTCCCTCCACGAGGACGACTGGCGATCTCGGCCTTCCCGGGGCCCTGCCCTCACCCCGATCCGGGATGAGGAGTGGGGTGGCCACT CCCCCCGGAGTCCCAGGGGATGGGACCAGGAGCCCGCCAGGGAGCAGGCAGGCGGGGGCTGGCGGGCCAGGCGGCCCCGGGCCCGCTCCG TGGACGCCCTGGACGACCTCACCCCGCCGAGCACCGCCGAGTCAGGGAGCAGGTCTCCCACGAGTAATGGTGGGAGAAGCCGGGCCTACA TGCCCCCGCGGAGCCGCAGCCGGGACGACCTCTATGACCAAGACGACTCGAGGGACTTCCCACGCTCCCGGGACCCCCACTACGACGACT TCAGGTCTCGGGAGCGCCCTCCTGCCGACCCCAGGTCCCACCACCACCGTACCCGGGACCCTCGGGACAACGGCTCCAGGTCCGGGGACC TCCCCTATGATGGGCGGCTACTGGAGGAGGCTGTGAGGAAGAAGGGGTCGGAGGAGAGGAGGAGACCCCACAAGGAGGAGGAGGAAGAGG CCTACTACCCGCCCGCGCCGCCCCCGTACTCGGAGACCGACTCGCAGGCGTCCCGAGAGCGCAGGCTCAAGAAGAACTTGGCCCTGAGTC GGGAAAGTTTAGTCGTCTGATCTGACGTTTTCTACGTAGCTTTTGTATTTTTTTTTTTAATTTGAAGGAACACTGATGAAGCCCTGCCAT ACCCCTCCCGAGTCTAATAAAACGTATAATCACAAGCTCCTGACATGAGCAGCTCTGAGGAATTTCCCAGCTTTGGGGCTCAGGTGGCTC CCAAGACCCTCCCTTGGGGCCCCAAACGATAATGATCAAAAAGAACAGAACCCTCTCCAGCCTGCTGACCCAAACCCAACCACACAATGG TTTGTCTCAATCTGACCCAGCGGCTGGACCCTCCGTAAATTGTTGACGCTCTTCCCCCTTCCCGAGGTCCCGCAGGGAGCCTAGCGCCTG GCTGTGTGTGCGGCCGCTCCTCCAGGCCTGGCCGTGCCCGCTCAGGACCTGCTCCACTGTTTAACACTAAACCAAGGTCATGAGCATTCG TGCTAAGATAACAGACTCCAGCTCCTGGTCCACCCGGCATGTCAGTCAGCACTCTGGCCTTCATCACGAGAGCTCCGCAGCCGTGGCTAG GATTCCACTTCCTGTGTCATGACCTCAGGAAATAAACGTCCTTGACTTTATAAAAGCCAAACTAGCTGACGTGGTGGACAGTGAGGCGCT GCAGGTATACATGAAACCCCCAGCACACGAAGAGGCCAAGGCACCTTCCAGAGGCTTTGTGGTGCGGGACGCACCCTGGACCGCCAGCAG CAGTGAGAAGGTGGACATTCGCTTCCCACAGAGCGGAGCCCCAGACCCCAACTGCGTCACTGTGACGGGGCTCCCAGAGAATGTGGAGGA AGCCATCGACCACATCCTCAATCTGGAGGAGGAATACCCCCAGGACCAAATTACCATCACAGGGTACGAAAAGAACACAGAAGCTGCCAG GGATGCTATACTGAGAATTGTGGGTGAACTTGAGCAGATGGTTTCTGAGGACGTCCCGCTGGACCACCGCGTTCACGCCCGCATCATTGG TGCCCGCGGCAAAGCCATTCGCAAAATCATGGACGAATTCAAGGCTTTAAGGAGTTTTAAGCTGAGTGTCACTGTAGACCCCAAATACCA TCCCAAGATTATCGGGAGAAAGGGGGCAGTAATTACCCAAATCCGGTTGGAGCATGACGTGAACATCCAGTTTCCTGATAAGGACGATGG GAACCAGGTGAACATACATGTCCCGGCACCTGAGCTGCAGTCTGACATCATCGCCATCACGGGCCTCGCTGCAAATTTGGACCGGGCCAA GGCTGGACTGCTGGAGCGTGTGAAGGAGCTACAGGCCGAGCAGGAGGACCGGGCATTGGTTCCTGTCACCATTGAAGTAGAGGTGCCCTT TGACCTTCACCGTTACGTTATTGGGCAGAAAGGAAGTGGGATCCGCAAGATGATGGATGAGTTTGAGTTCACAGTACAGAGCCAGTTGTC CAGGAGAATGGGGACGAAGCTGGGGAGGGGAGAGAGGCTAAAGATTGTGACCCCGGCTCTCCAAGGAGGTGTGACATCATCATCATCTCT GGCCGGAAAGAAAAGTGTGAGGCTGCCAAGGAAGCTCTGGAGGAAGCTCAGGTGACATTAGAATGTGCTATACCCCAGAAATTCCATCGA TCTGTCATGGGCCCCAAAGGTTCCAGAATCCAGCAGATTACTCGGGATTTCAGTGTTCAAATTAAATTCCCAGACAGAGAGGAGAACGCA GGATAATGTGGTGGAAGACTCCATGCTGGTGGACCCCAAGCACCACCGCCACTTCGTCATCCGCAGAGGCCAGGTCTTGCGGGAGATTGC TGAAGAGTATGGCGGGGTGATGGTCAGCTTCCCACGCTCTGGCACACAGAGCGACAAAGTCACCCTCAAGGGCGCCAAGGACTGTGTGGA GGCAGCCAAGAAACGCATTCAGGAGATCATTGAGGACCTGCAAACCAAGAGTTTCACTGTTGACATCCGCGCCAAGCCAGAATACCACAA ATTCCTCATCGGCAAGGGGGGCGGCAAAATTCGCAAGGTGCGCGACAGCACTGGAGCACGTGTCATCTTCCCTGCGGCTGAGGACAAGGA CCAGGACCTGATCACCATCATTGGAAAGGAGGACGCCGTCCGAGAGGCACAGAAGGAGCTGGAGGCCTTGATCCAAAACCTGGCCAACAT AGCCGAGGTAGAGGTCTCCATCCCTGCCAAGCTGCACAACTCCCTCATTGGCACCAAGGGCCGTCTGATCCGCTCCATCATGGAGGAGTG CGGCGGGGTCCACATTCACTTTCCCGTGGAAGGTTCAGGAAGCGACACCGTTGTTATCAGGGGCCCTTCCTCGGATGTGGAGAAGGCCAA GAAGCAGCTCCTGCATCTGGCGGAGGAGAAGATTCGTGAAGAAAGCAACACCAAAATCGACCTTCCAGCAGAGAATAGCAATTCAGAGAC CATTATCATCACAGGCAAGCGAGCCAACTGCGAAGCTGCCCGGAGCAGGATTCTGTCTATTCAGAAAGACCTGGTGGAAAATAGCTATTC AATTTCTGTTCCGATCTTCAAACAGTTTCACAAGAATATCATTGGGAAAGGAGGCGCAAACATTAAAAAGGTCATCATTAACTTTCCAGA CCCAGCACAAAAAAGTGACATTGTCCAGCTCAGAGGACCTAAGAATGAGGTGGAAAAATGCACAAAATACATGCAGAAGATGGTGGCAGA TCTGGAAAATGAGCGTACCAAGGATCTAATCATTGAGCAAAGATTTCATCGCACAATCATTGGGCAGAAGGGTGAACGGATCCGTGAAAT TCGTGACAAATTCCCAGAGTAAACAGAATCAAAGACCAGTACAAGGTGTCCGTGCGCATCCCTCCTGACAGTGAGAAGAGCAATTTGATC CGCATCGAGGGGGACCCACAGGGCGTGCAGCAGGCCAAGCGAGAGCTGCTGGAGCTTGCATCTCGCATGATTAACCGGATGGACTATGTG GAGATCAACATCGACCACAAGTTCCACAGGCACCTCATTGGGAAGAGCGGTGCCAACAGTTCACATCGAGTTCACAGAGGGCGAAGACAA GATCACCCTGGAGGGCCCTACAGAGGATGTCAATGTGGCCCAGGAACAGATAGAAGGCATGGTCAAAGATTTGGCCAATAGCTTCACCGT CTCCTCTGTCGCCGCCCCTTCCTGGCTTCACCGTTTCATCATTGGCAAGAAAGGGCAGAACCTGGCCAAAATCACTCAGCAGATGCCAAA GAAAAAGAAGACTACAACCATTGCAGTGGAAGTGAAGAAATCCCAACACAAGTATGTCATTGGGCCCAAGGGCAATTCATTGCAGGAGAT CCTTGAGAGAACTGGAGTTTCCGTTGAGATCCCACCCTCAGACAGCATCTCTGAGACTGTAATACTTCGAGGCGAACCTGAAAAGTTAGG TCAGGCGTTGACTGAAGTCTATGCCAAGGACAAACGTGCTGTGGAGAGGCTAGAAGTAGAAAAGGCATTCCACCCCTTCATCGCTGGGCC GTATAATAGACTGGTTGGCGAGATCATGCAGGAGACAGGCACGCGCATCAACATCCCCCCACCCAGCGTGAACCGGACAGAGATTGTCTT CACTGGAGAGAAGGAACAGTTGGCTCAGGCTGTGGCTCGCATCAAGAAGATTTATGAGGAGAAGGCCTCAGCAACTGTTGCCATTCCCAA AGAACACCATCGCTTTGTTATTGGCAAAAATGGAGAGAAACTGCAAGACTTGGAGCTAAAAACTGCAACCAAAATCCAGATCCCACGCCC AGATGACCCCAGCAATCAGATCAAGATCACTGGCACCAAAGAGGGCATCGAGAAAGCTCGCCATGAAGTCTTACTCATCTCTGCCGAGCA GAAGCAAAAATCTGCCTTGAGATCATGCAGAGAACTGGTGCTCACTTGGAGCTGTCTTTGGCCAAAGACCAAGGCCTCTCCATCATGGTG >50240_50240_3_LSR-HDLBP_LSR_chr19_35758865_ENST00000354900_HDLBP_chr2_242202277_ENST00000391976_length(amino acids)=647AA_BP= MKACPLSTSFTLIKTSRMQQDGLGVGTRNGSGKGRSVHPSWPWCAPRPLRYFGRDARARRAQTAAMALLAGGLSRGLGSHPAAAGRDAVV FVWLLLSTWCTAPARAIQVTVSNPYHVVILFQPVTLPCTYQMTSTPTQPIVIWKYKSFCRDRIADAFSPASVDNQLNAQLAAGNPGYNPY VECQDSVRTVRVVATKQGNAVTLGDYYQGRRITITGNADLTFDQTAWGDSGVYYCSVVSAQDLQGNNEAYAELIVLDWLFVVVVCLAAFL IFLLLGICWCQCCPHTCCCYVRCPCCPDKCCCPEALYAAGKAATSGVPSIYAPSTYAHLSPAKTPPPPAMIPMGPAYNGYPGGYPGDVDR SSSAGGQGSYVPLLRDTDSSVASEVRSGYRIQASQQDDSMRVLYYMEKELANFDPSRPGPPSGRVERAMSEVTSLHEDDWRSRPSRGPAL TPIRDEEWGGHSPRSPRGWDQEPAREQAGGGWRARRPRARSVDALDDLTPPSTAESGSRSPTSNGGRSRAYMPPRSRSRDDLYDQDDSRD FPRSRDPHYDDFRSRERPPADPRSHHHRTRDPRDNGSRSGDLPYDGRLLEEAVRKKGSEERRRPHKEEEEEAYYPPAPPPYSETDSQASR -------------------------------------------------------------- >50240_50240_4_LSR-HDLBP_LSR_chr19_35758865_ENST00000354900_HDLBP_chr2_242202277_ENST00000427183_length(transcript)=5786nt_BP=2105nt CGGGTGGAGTGTGGCTCGGAGGACCGCGGCGGGTCAAGCACCTTTCTCCCCCATATCTGAAAGCATGCCCTTTGTCCACGTCGTTTACGC TCATTAAAACTTCCAGAATGCAACAGGACGGACTTGGAGTAGGGACAAGGAACGGAAGTGGGAAGGGGAGGAGCGTGCACCCCTCCTGGC CTTGGTGCGCGCCGCGCCCCCTAAGGTACTTTGGAAGGGACGCGCGGGCCAGACGCGCCCAGACGGCCGCGATGGCGCTGTTGGCCGGCG GGCTCTCCAGAGGGCTGGGCTCCCACCCGGCCGCCGCAGGCCGGGACGCGGTCGTCTTCGTGTGGCTTCTGCTTAGCACCTGGTGCACAG CTCCTGCCAGGGCCATCCAGGTGACCGTGTCCAACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCTGCCCTGTACCTACCAGA TGACCTCGACCCCCACGCAACCCATCGTCATCTGGAAGTACAAGTCTTTCTGCCGGGACCGCATCGCCGATGCCTTCTCCCCGGCCAGCG TCGACAACCAGCTCAATGCCCAGCTGGCAGCCGGGAACCCAGGCTACAACCCCTACGTTGAGTGCCAGGACAGCGTGCGCACCGTCAGGG TCGTGGCCACCAAGCAGGGCAACGCTGTGACCCTGGGAGATTACTACCAGGGCCGGAGGATTACCATCACCGGAAATGCTGACCTGACCT TTGACCAGACGGCGTGGGGGGACAGTGGTGTGTATTACTGCTCCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCCTACGCAG AGCTCATCGTCCTTGACTGGCTCTTCGTGGTTGTGGTATGCCTGGCTGCCTTCCTCATCTTCCTCCTCCTGGGCATCTGCTGGTGCCAGT GCTGCCCGCACACTTGCTGCTGCTACGTCAGGTGCCCCTGCTGCCCAGACAAGTGCTGCTGCCCCGAGGCCCTGTATGCCGCCGGCAAAG CAGCCACCTCAGGTGTTCCCAGCATTTATGCCCCCAGCACCTATGCCCACCTGTCTCCCGCCAAGACCCCACCCCCACCAGCTATGATTC CCATGGGCCCTGCCTACAACGGGTACCCTGGAGGATACCCTGGAGACGTTGACAGGAGTAGCTCAGCTGGTGGCCAAGGCTCCTATGTAC CCCTGCTTCGGGACACGGACAGCAGTGTGGCCTCTGAAGTCCGCAGTGGCTACAGGATTCAGGCCAGCCAGCAGGACGACTCCATGCGGG TCCTGTACTACATGGAGAAGGAGCTGGCCAACTTCGACCCTTCTCGACCTGGCCCCCCCAGTGGCCGTGTGGAGCGGGCCATGAGTGAAG TCACCTCCCTCCACGAGGACGACTGGCGATCTCGGCCTTCCCGGGGCCCTGCCCTCACCCCGATCCGGGATGAGGAGTGGGGTGGCCACT CCCCCCGGAGTCCCAGGGGATGGGACCAGGAGCCCGCCAGGGAGCAGGCAGGCGGGGGCTGGCGGGCCAGGCGGCCCCGGGCCCGCTCCG TGGACGCCCTGGACGACCTCACCCCGCCGAGCACCGCCGAGTCAGGGAGCAGGTCTCCCACGAGTAATGGTGGGAGAAGCCGGGCCTACA TGCCCCCGCGGAGCCGCAGCCGGGACGACCTCTATGACCAAGACGACTCGAGGGACTTCCCACGCTCCCGGGACCCCCACTACGACGACT TCAGGTCTCGGGAGCGCCCTCCTGCCGACCCCAGGTCCCACCACCACCGTACCCGGGACCCTCGGGACAACGGCTCCAGGTCCGGGGACC TCCCCTATGATGGGCGGCTACTGGAGGAGGCTGTGAGGAAGAAGGGGTCGGAGGAGAGGAGGAGACCCCACAAGGAGGAGGAGGAAGAGG CCTACTACCCGCCCGCGCCGCCCCCGTACTCGGAGACCGACTCGCAGGCGTCCCGAGAGCGCAGGCTCAAGAAGAACTTGGCCCTGAGTC GGGAAAGTTTAGTCGTCTGATCTGACGTTTTCTACGTAGCTTTTGTATTTTTTTTTTTAATTTGAAGGAACACTGATGAAGCCCTGCCAT ACCCCTCCCGAGTCTAATAAAACGTATAATCACAAGCTCCTGACATGAGCAGCTCTGAGGAATTTCCCAGCTTTGGGGCTCAGGTGGCTC CCAAGACCCTCCCTTGGGGCCCCAAACGATAATGATCAAAAAGAACAGAACCCTCTCCAGCCTGCTGACCCAAACCCAACCACACAATGG TTTGTCTCAATCTGACCCAGCGGCTGGACCCTCCGTAAATTGTTGACGCTCTTCCCCCTTCCCGAGGTCCCGCAGGGAGCCTAGCGCCTG GCTGTGTGTGCGGCCGCTCCTCCAGGCCTGGCCGTGCCCGCTCAGGACCTGCTCCACTGTTTAACACTAAACCAAGGTCATGAGCATTCG TGCTAAGATAACAGACTCCAGCTCCTGGTCCACCCGGCATGTCAGTCAGCACTCTGGCCTTCATCACGAGAGCTCCGCAGCCGTGGCTAG GATTCCACTTCCTGTGTCATGACCTCAGGAAATAAACGTCCTTGACTTTATCTAGCTGACGTGGTGGACAGTGAGGCGCTGCAGGTATAC ATGAAACCCCCAGCACACGAAGAGGCCAAGGCACCTTCCAGAGGCTTTGTGGTGCGGGACGCACCCTGGACCGCCAGCAGCAGTGAGAAG GTGGACATTCGCTTCCCACAGAGCGGAGCCCCAGACCCCAACTGCGTCACTGTGACGGGGCTCCCAGAGAATGTGGAGGAAGCCATCGAC CACATCCTCAATCTGGAGGAGGAATACCCCCAGGACCAAATTACCATCACAGGGTACGAAAAGAACACAGAAGCTGCCAGGGATGCTATA CTGAGAATTGTGGGTGAACTTGAGCAGATGGTTTCTGAGGACGTCCCGCTGGACCACCGCGTTCACGCCCGCATCATTGGTGCCCGCGGC AAAGCCATTCGCAAAATCATGGACGAATTCAAGGCTTTAAGGAGTTTTAAGCTGAGTGTCACTGTAGACCCCAAATACCATCCCAAGATT ATCGGGAGAAAGGGGGCAGTAATTACCCAAATCCGGTTGGAGCATGACGTGAACATCCAGTTTCCTGATAAGGACGATGGGAACCAGGTG AACATACATGTCCCGGCACCTGAGCTGCAGTCTGACATCATCGCCATCACGGGCCTCGCTGCAAATTTGGACCGGGCCAAGGCTGGACTG CTGGAGCGTGTGAAGGAGCTACAGGCCGAGCAGGAGGACCGGGCATTGGTTCCTGTCACCATTGAAGTAGAGGTGCCCTTTGACCTTCAC CGTTACGTTATTGGGCAGAAAGGAAGTGGGATCCGCAAGATGATGGATGAGTTTGAGTTCACAGTACAGAGCCAGTTGTCCAGGAGAATG GGGACGAAGCTGGGGAGGGGAGAGAGGCTAAAGATTGTGACCCCGGCTCTCCAAGGAGGTGTGACATCATCATCATCTCTGGCCGGAAAG AAAAGTGTGAGGCTGCCAAGGAAGCTCTGGAGGAAGCTCAGGTGACATTAGAATGTGCTATACCCCAGAAATTCCATCGATCTGTCATGG GCCCCAAAGGTTCCAGAATCCAGCAGATTACTCGGGATTTCAGTGTTCAAATTAAATTCCCAGACAGAGAGGAGAACGCAGGATAATGTG GTGGAAGACTCCATGCTGGTGGACCCCAAGCACCACCGCCACTTCGTCATCCGCAGAGGCCAGGTCTTGCGGGAGATTGCTGAAGAGTAT GGCGGGGTGATGGTCAGCTTCCCACGCTCTGGCACACAGAGCGACAAAGTCACCCTCAAGGGCGCCAAGGACTGTGTGGAGGCAGCCAAG AAACGCATTCAGGAGATCATTGAGGACCTGCAAACCAAGAGTTTCACTGTTGACATCCGCGCCAAGCCAGAATACCACAAATTCCTCATC GGCAAGGGGGGCGGCAAAATTCGCAAGGTGCGCGACAGCACTGGAGCACGTGTCATCTTCCCTGCGGCTGAGGACAAGGACCAGGACCTG ATCACCATCATTGGAAAGGAGGACGCCGTCCGAGAGGCACAGAAGGAGCTGGAGGCCTTGATCCAAAACCTGGCCAACATAGCCGAGGTA GAGGTCTCCATCCCTGCCAAGCTGCACAACTCCCTCATTGGCACCAAGGGCCGTCTGATCCGCTCCATCATGGAGGAGTGCGGCGGGGTC CACATTCACTTTCCCGTGGAAGGTTCAGGAAGCGACACCGTTGTTATCAGGGGCCCTTCCTCGGATGTGGAGAAGGCCAAGAAGCAGCTC CTGCATCTGGCGGAGGAGAAGATTCGTGAAGAAAGCAACACCAAAATCGACCTTCCAGCAGAGAATAGCAATTCAGAGACCATTATCATC ACAGGCAAGCGAGCCAACTGCGAAGCTGCCCGGAGCAGGATTCTGTCTATTCAGAAAGACCTGGTGGAAAATAGCTATTCAATTTCTGTT CCGATCTTCAAACAGTTTCACAAGAATATCATTGGGAAAGGAGGCGCAAACATTAAAAAGGTCATCATTAACTTTCCAGACCCAGCACAA AAAAGTGACATTGTCCAGCTCAGAGGACCTAAGAATGAGGTGGAAAAATGCACAAAATACATGCAGAAGATGGTGGCAGATCTGGAAAAT GAGCGTACCAAGGATCTAATCATTGAGCAAAGATTTCATCGCACAATCATTGGGCAGAAGGGTGAACGGATCCGTGAAATTCGTGACAAA TTCCCAGAGTAAACAGAATCAAAGACCAGTACAAGGTGTCCGTGCGCATCCCTCCTGACAGTGAGAAGAGCAATTTGATCCGCATCGAGG GGGACCCACAGGGCGTGCAGCAGGCCAAGCGAGAGCTGCTGGAGCTTGCATCTCGCATGATTAACCGGATGGACTATGTGGAGATCAACA TCGACCACAAGTTCCACAGGCACCTCATTGGGAAGAGCGGTGCCAACAGTTCACATCGAGTTCACAGAGGGCGAAGACAAGATCACCCTG GAGGGCCCTACAGAGGATGTCAATGTGGCCCAGGAACAGATAGAAGGCATGGTCAAAGATTTGGCCAATAGCTTCACCGTCTCCTCTGTC GCCGCCCCTTCCTGGCTTCACCGTTTCATCATTGGCAAGAAAGGGCAGAACCTGGCCAAAATCACTCAGCAGATGCCAAAGGACAAACGT GCTGTGGAGAGGCTAGAAGTAGAAAAGGCATTCCACCCCTTCATCGCTGGGCCGTATAATAGACTGGTTGGCGAGATCATGCAGGAGACA GGCACGCGCATCAACATCCCCCCACCCAGCGTGAACCGGACAGAGATTGTCTTCACTGGAGAGAAGGAACAGTTGGCTCAGGCTGTGGCT CGCATCAAGAAGATTTATGAGGAGAAGGCCTCAGCAACTGTTGCCATTCCCAAAGAACACCATCGCTTTGTTATTGGCAAAAATGGAGAG AAACTGCAAGACTTGGAGCTAAAAACTGCAACCAAAATCCAGATCCCACGCCCAGATGACCCCAGCAATCAGATCAAGATCACTGGCACC AAAGAGGGCATCGAGAAAGCTCGCCATGAAGTCTTACTCATCTCTGCCGAGCAGAAGCAAAAATCTGCCTTGAGATCATGCAGAGAACTG GTGCTCACTTGGAGCTGTCTTTGGCCAAAGACCAAGGCCTCTCCATCATGGTGTCAGGAAAGCTGGATGCTGTCATGAAAGCTCGGAAGG >50240_50240_4_LSR-HDLBP_LSR_chr19_35758865_ENST00000354900_HDLBP_chr2_242202277_ENST00000427183_length(amino acids)=647AA_BP= MKACPLSTSFTLIKTSRMQQDGLGVGTRNGSGKGRSVHPSWPWCAPRPLRYFGRDARARRAQTAAMALLAGGLSRGLGSHPAAAGRDAVV FVWLLLSTWCTAPARAIQVTVSNPYHVVILFQPVTLPCTYQMTSTPTQPIVIWKYKSFCRDRIADAFSPASVDNQLNAQLAAGNPGYNPY VECQDSVRTVRVVATKQGNAVTLGDYYQGRRITITGNADLTFDQTAWGDSGVYYCSVVSAQDLQGNNEAYAELIVLDWLFVVVVCLAAFL IFLLLGICWCQCCPHTCCCYVRCPCCPDKCCCPEALYAAGKAATSGVPSIYAPSTYAHLSPAKTPPPPAMIPMGPAYNGYPGGYPGDVDR SSSAGGQGSYVPLLRDTDSSVASEVRSGYRIQASQQDDSMRVLYYMEKELANFDPSRPGPPSGRVERAMSEVTSLHEDDWRSRPSRGPAL TPIRDEEWGGHSPRSPRGWDQEPAREQAGGGWRARRPRARSVDALDDLTPPSTAESGSRSPTSNGGRSRAYMPPRSRSRDDLYDQDDSRD FPRSRDPHYDDFRSRERPPADPRSHHHRTRDPRDNGSRSGDLPYDGRLLEEAVRKKGSEERRRPHKEEEEEAYYPPAPPPYSETDSQASR -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for LSR-HDLBP |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for LSR-HDLBP |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for LSR-HDLBP |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | LSR | C0007097 | Carcinoma | 2 | CTD_human |
Hgene | LSR | C0024667 | Animal Mammary Neoplasms | 2 | CTD_human |
Hgene | LSR | C0024668 | Mammary Neoplasms, Experimental | 2 | CTD_human |
Hgene | LSR | C0205696 | Anaplastic carcinoma | 2 | CTD_human |
Hgene | LSR | C0205697 | Carcinoma, Spindle-Cell | 2 | CTD_human |
Hgene | LSR | C0205698 | Undifferentiated carcinoma | 2 | CTD_human |
Hgene | LSR | C0205699 | Carcinomatosis | 2 | CTD_human |
Hgene | LSR | C1257925 | Mammary Carcinoma, Animal | 2 | CTD_human |
Tgene | C0004352 | Autistic Disorder | 1 | CTD_human | |
Tgene | C2931817 | Chromosome 2q37 deletion syndrome | 1 | CTD_human |