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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:STAT1-DLG2 (FusionGDB2 ID:HG6772TG1740)

Fusion Gene Summary for STAT1-DLG2

check button Fusion gene summary
Fusion gene informationFusion gene name: STAT1-DLG2
Fusion gene ID: hg6772tg1740
HgeneTgene
Gene symbol

STAT1

DLG2

Gene ID

6772

1740

Gene namesignal transducer and activator of transcription 1discs large MAGUK scaffold protein 2
SynonymsCANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91PPP1R58|PSD-93|PSD93|chapsyn-110
Cytomap('STAT1')('DLG2')

2q32.2

11q14.1

Type of geneprotein-codingprotein-coding
Descriptionsignal transducer and activator of transcription 1-alpha/betasignal transducer and activator of transcription 1, 91kDsignal transducer and activator of transcription 1, 91kDatranscription factor ISGF-3 components p91/p84disks large homolog 2DLG2 protein isoformchannel-associated protein of synapse-110channel-associated protein of synapses, 110kDadiscs, large homolog 2, chapsyn-110postsynaptic density protein PSD-93protein phosphatase 1, regulatory subunit 58
Modification date2020032920200313
UniProtAcc.

Q15700

Ensembl transtripts involved in fusion geneENST00000361099, ENST00000392322, 
ENST00000392323, ENST00000409465, 
ENST00000540176, 
Fusion gene scores* DoF score7 X 8 X 3=16845 X 44 X 9=17820
# samples 848
** MAII scorelog2(8/168*10)=-1.0703893278914
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(48/17820*10)=-5.21431912080077
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: STAT1 [Title/Abstract] AND DLG2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSTAT1(191833992)-DLG2(84350444), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneSTAT1

GO:0007259

JAK-STAT cascade

22002246

HgeneSTAT1

GO:0010742

macrophage derived foam cell differentiation

26504087

HgeneSTAT1

GO:0032727

positive regulation of interferon-alpha production

28753426

HgeneSTAT1

GO:0033209

tumor necrosis factor-mediated signaling pathway

10848577

HgeneSTAT1

GO:0045893

positive regulation of transcription, DNA-templated

10973496

HgeneSTAT1

GO:0051607

defense response to virus

28753426

HgeneSTAT1

GO:0060333

interferon-gamma-mediated signaling pathway

21268089

HgeneSTAT1

GO:0060337

type I interferon signaling pathway

23386060

HgeneSTAT1

GO:0071346

cellular response to interferon-gamma

23386060

TgeneDLG2

GO:0010923

negative regulation of phosphatase activity

19389623



check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/ABG575817STAT1chr2

191833992

-DLG2chr11

84350444

-


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Fusion Gene ORF analysis for STAT1-DLG2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000361099ENST00000280241STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000330014STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000376104STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000376106STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000398301STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000398304STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000398309STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000404783STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000418306STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000426717STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000472545STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000524982STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000530800STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000531015STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000532653STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000537455STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000361099ENST00000543673STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000280241STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000330014STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000376104STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000376106STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000398301STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000398304STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000398309STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000404783STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000418306STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000426717STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000472545STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000524982STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000530800STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000531015STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000532653STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000537455STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392322ENST00000543673STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000280241STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000330014STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000376104STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000376106STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000398301STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000398304STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000398309STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000404783STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000418306STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000426717STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000472545STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000524982STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000530800STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000531015STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000532653STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000537455STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000392323ENST00000543673STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000280241STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000330014STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000376104STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000376106STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000398301STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000398304STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000398309STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000404783STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000418306STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000426717STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000472545STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000524982STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000530800STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000531015STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000532653STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000537455STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000409465ENST00000543673STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000280241STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000330014STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000376104STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000376106STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000398301STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000398304STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000398309STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000404783STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000418306STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000426717STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000472545STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000524982STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000530800STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000531015STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000532653STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000537455STAT1chr2

191833992

-DLG2chr11

84350444

-
intron-intronENST00000540176ENST00000543673STAT1chr2

191833992

-DLG2chr11

84350444

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for STAT1-DLG2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)


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Fusion Protein Features for STAT1-DLG2


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:191833992/:84350444)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.DLG2

Q15700

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Required for perception of chronic pain through NMDA receptor signaling. Regulates surface expression of NMDA receptors in dorsal horn neurons of the spinal cord. Interacts with the cytoplasmic tail of NMDA receptor subunits as well as inward rectifying potassium channels. Involved in regulation of synaptic stability at cholinergic synapses. Part of the postsynaptic protein scaffold of excitatory synapses (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for STAT1-DLG2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for STAT1-DLG2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for STAT1-DLG2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for STAT1-DLG2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneSTAT1C3151088IMMUNODEFICIENCY 31B8CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
HgeneSTAT1C3279990CANDIDIASIS, FAMILIAL, 78CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
HgeneSTAT1C4013950IMMUNODEFICIENCY 31A5CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
HgeneSTAT1C0003865Arthritis, Adjuvant-Induced1CTD_human
HgeneSTAT1C0003873Rheumatoid Arthritis1CTD_human
HgeneSTAT1C0006845Candidiasis, Chronic Mucocutaneous1CTD_human
HgeneSTAT1C0010823Cytomegalovirus Infections1CTD_human
HgeneSTAT1C0021400Influenza1CTD_human
HgeneSTAT1C0023890Liver Cirrhosis1CTD_human
HgeneSTAT1C0026918Mycobacterium Infections1CTD_human
HgeneSTAT1C0027627Neoplasm Metastasis1CTD_human
HgeneSTAT1C0235874Disease Exacerbation1CTD_human
HgeneSTAT1C0239946Fibrosis, Liver1CTD_human
HgeneSTAT1C0494261Combined immunodeficiency1GENOMICS_ENGLAND
HgeneSTAT1C0971858Arthritis, Collagen-Induced1CTD_human
HgeneSTAT1C0993582Arthritis, Experimental1CTD_human
HgeneSTAT1C1384666hearing impairment1CTD_human
HgeneSTAT1C1961099Precursor T-Cell Lymphoblastic Leukemia-Lymphoma1CTD_human
HgeneSTAT1C2239176Liver carcinoma1CTD_human
TgeneC0036341Schizophrenia4PSYGENET
TgeneC0005586Bipolar Disorder2PSYGENET
TgeneC0025202melanoma1CTD_human
TgeneC0041696Unipolar Depression1PSYGENET
TgeneC0809983Schizophrenia and related disorders1PSYGENET
TgeneC1269683Major Depressive Disorder1PSYGENET