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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:ARID3B-USP47 (FusionGDB2 ID:HG10620TG55031) |
Fusion Gene Summary for ARID3B-USP47 |
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Fusion gene information | Fusion gene name: ARID3B-USP47 | Fusion gene ID: hg10620tg55031 | Hgene | Tgene | Gene symbol | ARID3B | USP47 | Gene ID | 10620 | 55031 |
Gene name | AT-rich interaction domain 3B | ubiquitin specific peptidase 47 | |
Synonyms | BDP|DRIL2 | TRFP | |
Cytomap | ('ARID3B')('USP47') 15q24.1 | 11p15.3 | |
Type of gene | protein-coding | protein-coding | |
Description | AT-rich interactive domain-containing protein 3BARID domain-containing protein 3BAT rich interactive domain 3B (BRIGHT- like)bright and dead ringer proteinbright-like protein | ubiquitin carboxyl-terminal hydrolase 47Trf (TATA binding protein-related factor)-proximal homologdeubiquitinating enzyme 47ubiquitin thioesterase 47ubiquitin thiolesterase 47ubiquitin-specific-processing protease 47 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000346246, ENST00000563567, | ||
Fusion gene scores | * DoF score | 2 X 1 X 2=4 | 11 X 14 X 4=616 |
# samples | 3 | 13 | |
** MAII score | log2(3/4*10)=2.90689059560852 | log2(13/616*10)=-2.24441872766645 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ARID3B [Title/Abstract] AND USP47 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ARID3B(74833671)-USP47(11906014), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | USP47 | GO:0035520 | monoubiquitinated protein deubiquitination | 21362556 |
![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | UCEC | TCGA-BK-A26L-01A | ARID3B | chr15 | 74833671 | - | USP47 | chr11 | 11906014 | + |
ChimerDB4 | UCEC | TCGA-BK-A26L-01A | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906014 | + |
ChimerDB4 | UCEC | TCGA-BK-A26L | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + |
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Fusion Gene ORF analysis for ARID3B-USP47 |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000346246 | ENST00000339865 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906014 | + |
5UTR-3CDS | ENST00000346246 | ENST00000339865 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + |
5UTR-5UTR | ENST00000346246 | ENST00000399455 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906014 | + |
5UTR-5UTR | ENST00000346246 | ENST00000399455 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + |
5UTR-5UTR | ENST00000346246 | ENST00000527733 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906014 | + |
5UTR-5UTR | ENST00000346246 | ENST00000527733 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + |
5UTR-5UTR | ENST00000346246 | ENST00000539466 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906014 | + |
5UTR-5UTR | ENST00000346246 | ENST00000539466 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + |
5UTR-intron | ENST00000346246 | ENST00000305481 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906014 | + |
5UTR-intron | ENST00000346246 | ENST00000305481 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + |
intron-3CDS | ENST00000563567 | ENST00000339865 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906014 | + |
intron-3CDS | ENST00000563567 | ENST00000339865 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + |
intron-5UTR | ENST00000563567 | ENST00000399455 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906014 | + |
intron-5UTR | ENST00000563567 | ENST00000399455 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + |
intron-5UTR | ENST00000563567 | ENST00000527733 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906014 | + |
intron-5UTR | ENST00000563567 | ENST00000527733 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + |
intron-5UTR | ENST00000563567 | ENST00000539466 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906014 | + |
intron-5UTR | ENST00000563567 | ENST00000539466 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + |
intron-intron | ENST00000563567 | ENST00000305481 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906014 | + |
intron-intron | ENST00000563567 | ENST00000305481 | ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for ARID3B-USP47 |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + | 5.48E-07 | 0.9999994 |
ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + | 5.48E-07 | 0.9999994 |
ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + | 5.48E-07 | 0.9999994 |
ARID3B | chr15 | 74833671 | + | USP47 | chr11 | 11906013 | + | 5.48E-07 | 0.9999994 |
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Fusion Protein Features for ARID3B-USP47 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:74833671/:11906014) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for ARID3B-USP47 |
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Fusion Gene PPI Analysis for ARID3B-USP47 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ARID3B-USP47 |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ARID3B-USP47 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |