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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Diseases

Fusion gene:CELF1-MTCH2 (FusionGDB2 ID:HG10658TG23788)

Fusion Gene Summary for CELF1-MTCH2

check button Fusion gene summary
Fusion gene informationFusion gene name: CELF1-MTCH2
Fusion gene ID: hg10658tg23788
HgeneTgene
Gene symbol

CELF1

MTCH2

Gene ID

10658

23788

Gene nameCUGBP Elav-like family member 1mitochondrial carrier 2
SynonymsBRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50HSPC032|MIMP|SLC25A50
Cytomap('CELF1')('MTCH2')

11p11.2

11p11.2

Type of geneprotein-codingprotein-coding
DescriptionCUGBP Elav-like family member 150 kDa nuclear polyadenylated RNA-binding proteinCUG RNA-binding proteinCUG triplet repeat RNA-binding protein 1CUG-BP- and ETR-3-like factor 1EDEN-BP homologRNA-binding protein BRUNOL-2bruno-like 2bruno-like proteinmitochondrial carrier homolog 22310034D24Rikmet-induced mitochondrial proteinsolute carrier family 25, member 50
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000310513, ENST00000358597, 
ENST00000361904, ENST00000395290, 
ENST00000395292, ENST00000531165, 
ENST00000532048, ENST00000539455, 
Fusion gene scores* DoF score23 X 21 X 14=67626 X 8 X 5=240
# samples 359
** MAII scorelog2(35/6762*10)=-4.27202318906105
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(9/240*10)=-1.41503749927884
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CELF1 [Title/Abstract] AND MTCH2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCELF1(47494639)-MTCH2(47660603), # samples:1
CELF1(47494640)-MTCH2(47660603), # samples:1
CELF1(47586826)-MTCH2(47644328), # samples:1
CELF1(47494639)-MTCH2(47660602), # samples:1
CELF1(47564876)-MTCH2(47642128), # samples:1
Anticipated loss of major functional domain due to fusion event.CELF1-MTCH2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
CELF1-MTCH2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
CELF1-MTCH2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
CELF1-MTCH2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
CELF1-MTCH2 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
CELF1-MTCH2 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
CELF1-MTCH2 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCELF1

GO:0006376

mRNA splice site selection

11158314

HgeneCELF1

GO:0043484

regulation of RNA splicing

16946708


check buttonFusion gene breakpoints across CELF1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure
check buttonFusion gene breakpoints across MTCH2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-EW-A1OW-01ACELF1chr11

47586826

-MTCH2chr11

47644328

-
ChimerDB4LUSCTCGA-43-6771-01ACELF1chr11

47494639

-MTCH2chr11

47660602

-
ChimerDB4LUSCTCGA-43-6771-01ACELF1chr11

47494640

-MTCH2chr11

47660603

-
ChimerDB4LUSCTCGA-43-6771CELF1chr11

47494639

-MTCH2chr11

47660603

-


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Fusion Gene ORF analysis for CELF1-MTCH2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-5UTRENST00000310513ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-5UTRENST00000310513ENST00000542981CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000310513ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000358597ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-5UTRENST00000358597ENST00000542981CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000358597ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000361904ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-5UTRENST00000361904ENST00000542981CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000361904ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000395290ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-5UTRENST00000395290ENST00000542981CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000395290ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000395292ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-5UTRENST00000395292ENST00000542981CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000395292ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000531165ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-5UTRENST00000531165ENST00000542981CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000531165ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000532048ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-5UTRENST00000532048ENST00000542981CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-5UTRENST00000532048ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-intronENST00000310513ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-intronENST00000310513ENST00000534074CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-intronENST00000310513ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-intronENST00000358597ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-intronENST00000358597ENST00000534074CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-intronENST00000358597ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-intronENST00000361904ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-intronENST00000361904ENST00000534074CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-intronENST00000361904ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-intronENST00000395290ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-intronENST00000395290ENST00000534074CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-intronENST00000395290ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-intronENST00000395292ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-intronENST00000395292ENST00000534074CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-intronENST00000395292ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-intronENST00000531165ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-intronENST00000531165ENST00000534074CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-intronENST00000531165ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660603

-
5CDS-intronENST00000532048ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660602

-
5CDS-intronENST00000532048ENST00000534074CELF1chr11

47494640

-MTCH2chr11

47660603

-
5CDS-intronENST00000532048ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660603

-
5UTR-3CDSENST00000539455ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660602

-
5UTR-3CDSENST00000539455ENST00000302503CELF1chr11

47494640

-MTCH2chr11

47660603

-
5UTR-3CDSENST00000539455ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660603

-
5UTR-5UTRENST00000539455ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660602

-
5UTR-5UTRENST00000539455ENST00000542981CELF1chr11

47494640

-MTCH2chr11

47660603

-
5UTR-5UTRENST00000539455ENST00000542981CELF1chr11

47494639

-MTCH2chr11

47660603

-
5UTR-intronENST00000539455ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660602

-
5UTR-intronENST00000539455ENST00000534074CELF1chr11

47494640

-MTCH2chr11

47660603

-
5UTR-intronENST00000539455ENST00000534074CELF1chr11

47494639

-MTCH2chr11

47660603

-
Frame-shiftENST00000358597ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660602

-
Frame-shiftENST00000358597ENST00000302503CELF1chr11

47494640

-MTCH2chr11

47660603

-
Frame-shiftENST00000358597ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660603

-
Frame-shiftENST00000361904ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660602

-
Frame-shiftENST00000361904ENST00000302503CELF1chr11

47494640

-MTCH2chr11

47660603

-
Frame-shiftENST00000361904ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660603

-
Frame-shiftENST00000395290ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660602

-
Frame-shiftENST00000395290ENST00000302503CELF1chr11

47494640

-MTCH2chr11

47660603

-
Frame-shiftENST00000395290ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660603

-
Frame-shiftENST00000395292ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660602

-
Frame-shiftENST00000395292ENST00000302503CELF1chr11

47494640

-MTCH2chr11

47660603

-
Frame-shiftENST00000395292ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660603

-
Frame-shiftENST00000531165ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660602

-
Frame-shiftENST00000531165ENST00000302503CELF1chr11

47494640

-MTCH2chr11

47660603

-
Frame-shiftENST00000531165ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660603

-
Frame-shiftENST00000532048ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660602

-
Frame-shiftENST00000532048ENST00000302503CELF1chr11

47494640

-MTCH2chr11

47660603

-
Frame-shiftENST00000532048ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660603

-
In-frameENST00000310513ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660602

-
In-frameENST00000310513ENST00000302503CELF1chr11

47494640

-MTCH2chr11

47660603

-
In-frameENST00000310513ENST00000302503CELF1chr11

47494639

-MTCH2chr11

47660603

-
intron-3CDSENST00000310513ENST00000302503CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000310513ENST00000542981CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000358597ENST00000302503CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000358597ENST00000542981CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000361904ENST00000302503CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000361904ENST00000542981CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000395290ENST00000302503CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000395290ENST00000542981CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000395292ENST00000302503CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000395292ENST00000542981CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000531165ENST00000302503CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000531165ENST00000542981CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000532048ENST00000302503CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000532048ENST00000542981CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000539455ENST00000302503CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-3CDSENST00000539455ENST00000542981CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-5UTRENST00000310513ENST00000534074CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-5UTRENST00000358597ENST00000534074CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-5UTRENST00000361904ENST00000534074CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-5UTRENST00000395290ENST00000534074CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-5UTRENST00000395292ENST00000534074CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-5UTRENST00000531165ENST00000534074CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-5UTRENST00000532048ENST00000534074CELF1chr11

47586826

-MTCH2chr11

47644328

-
intron-5UTRENST00000539455ENST00000534074CELF1chr11

47586826

-MTCH2chr11

47644328

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000310513CELF1chr1147494639-ENST00000302503MTCH2chr1147660603-379914571361467443
ENST00000310513CELF1chr1147494640-ENST00000302503MTCH2chr1147660603-379914571361467443
ENST00000310513CELF1chr1147494639-ENST00000302503MTCH2chr1147660602-379914571361467443

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000310513ENST00000302503CELF1chr1147494639-MTCH2chr1147660603-0.0016903960.9983096
ENST00000310513ENST00000302503CELF1chr1147494640-MTCH2chr1147660603-0.0016903960.9983096
ENST00000310513ENST00000302503CELF1chr1147494639-MTCH2chr1147660602-0.0016903960.9983096

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Fusion Genomic Features for CELF1-MTCH2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

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Fusion Protein Features for CELF1-MTCH2


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr11:47494639/chr11:47660603)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCELF1chr11:47494639chr11:47660602ENST00000310513-1214287_308440596.6666666666666Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494639chr11:47660602ENST00000358597-1113287_308444658.3333333333334Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494639chr11:47660602ENST00000361904-1113287_308441475.0Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494639chr11:47660602ENST00000395290-1113287_3084432504.3333333333335Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494639chr11:47660602ENST00000395292-1214287_308441579.6666666666666Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494639chr11:47660602ENST00000532048-1416287_308470488.3333333333333Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494639chr11:47660603ENST00000310513-1214287_308440596.6666666666666Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494639chr11:47660603ENST00000358597-1113287_308444658.3333333333334Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494639chr11:47660603ENST00000361904-1113287_308441475.0Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494639chr11:47660603ENST00000395290-1113287_3084432504.3333333333335Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494639chr11:47660603ENST00000395292-1214287_308441579.6666666666666Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494639chr11:47660603ENST00000532048-1416287_308470488.3333333333333Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494640chr11:47660603ENST00000310513-1214287_308440596.6666666666666Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494640chr11:47660603ENST00000358597-1113287_308444658.3333333333334Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494640chr11:47660603ENST00000361904-1113287_308441475.0Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494640chr11:47660603ENST00000395290-1113287_3084432504.3333333333335Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494640chr11:47660603ENST00000395292-1214287_308441579.6666666666666Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494640chr11:47660603ENST00000532048-1416287_308470488.3333333333333Compositional biasNote=Ser-rich
HgeneCELF1chr11:47494639chr11:47660602ENST00000310513-1214108_188440596.6666666666666DomainRRM 2
HgeneCELF1chr11:47494639chr11:47660602ENST00000310513-121416_99440596.6666666666666DomainRRM 1
HgeneCELF1chr11:47494639chr11:47660602ENST00000358597-1113108_188444658.3333333333334DomainRRM 2
HgeneCELF1chr11:47494639chr11:47660602ENST00000358597-111316_99444658.3333333333334DomainRRM 1
HgeneCELF1chr11:47494639chr11:47660602ENST00000361904-1113108_188441475.0DomainRRM 2
HgeneCELF1chr11:47494639chr11:47660602ENST00000361904-111316_99441475.0DomainRRM 1
HgeneCELF1chr11:47494639chr11:47660602ENST00000395290-1113108_1884432504.3333333333335DomainRRM 2
HgeneCELF1chr11:47494639chr11:47660602ENST00000395290-111316_994432504.3333333333335DomainRRM 1
HgeneCELF1chr11:47494639chr11:47660602ENST00000395292-1214108_188441579.6666666666666DomainRRM 2
HgeneCELF1chr11:47494639chr11:47660602ENST00000395292-121416_99441579.6666666666666DomainRRM 1
HgeneCELF1chr11:47494639chr11:47660602ENST00000532048-1416108_188470488.3333333333333DomainRRM 2
HgeneCELF1chr11:47494639chr11:47660602ENST00000532048-141616_99470488.3333333333333DomainRRM 1
HgeneCELF1chr11:47494639chr11:47660603ENST00000310513-1214108_188440596.6666666666666DomainRRM 2
HgeneCELF1chr11:47494639chr11:47660603ENST00000310513-121416_99440596.6666666666666DomainRRM 1
HgeneCELF1chr11:47494639chr11:47660603ENST00000358597-1113108_188444658.3333333333334DomainRRM 2
HgeneCELF1chr11:47494639chr11:47660603ENST00000358597-111316_99444658.3333333333334DomainRRM 1
HgeneCELF1chr11:47494639chr11:47660603ENST00000361904-1113108_188441475.0DomainRRM 2
HgeneCELF1chr11:47494639chr11:47660603ENST00000361904-111316_99441475.0DomainRRM 1
HgeneCELF1chr11:47494639chr11:47660603ENST00000395290-1113108_1884432504.3333333333335DomainRRM 2
HgeneCELF1chr11:47494639chr11:47660603ENST00000395290-111316_994432504.3333333333335DomainRRM 1
HgeneCELF1chr11:47494639chr11:47660603ENST00000395292-1214108_188441579.6666666666666DomainRRM 2
HgeneCELF1chr11:47494639chr11:47660603ENST00000395292-121416_99441579.6666666666666DomainRRM 1
HgeneCELF1chr11:47494639chr11:47660603ENST00000532048-1416108_188470488.3333333333333DomainRRM 2
HgeneCELF1chr11:47494639chr11:47660603ENST00000532048-141616_99470488.3333333333333DomainRRM 1
HgeneCELF1chr11:47494640chr11:47660603ENST00000310513-1214108_188440596.6666666666666DomainRRM 2
HgeneCELF1chr11:47494640chr11:47660603ENST00000310513-121416_99440596.6666666666666DomainRRM 1
HgeneCELF1chr11:47494640chr11:47660603ENST00000358597-1113108_188444658.3333333333334DomainRRM 2
HgeneCELF1chr11:47494640chr11:47660603ENST00000358597-111316_99444658.3333333333334DomainRRM 1
HgeneCELF1chr11:47494640chr11:47660603ENST00000361904-1113108_188441475.0DomainRRM 2
HgeneCELF1chr11:47494640chr11:47660603ENST00000361904-111316_99441475.0DomainRRM 1
HgeneCELF1chr11:47494640chr11:47660603ENST00000395290-1113108_1884432504.3333333333335DomainRRM 2
HgeneCELF1chr11:47494640chr11:47660603ENST00000395290-111316_994432504.3333333333335DomainRRM 1
HgeneCELF1chr11:47494640chr11:47660603ENST00000395292-1214108_188441579.6666666666666DomainRRM 2
HgeneCELF1chr11:47494640chr11:47660603ENST00000395292-121416_99441579.6666666666666DomainRRM 1
HgeneCELF1chr11:47494640chr11:47660603ENST00000532048-1416108_188470488.3333333333333DomainRRM 2
HgeneCELF1chr11:47494640chr11:47660603ENST00000532048-141616_99470488.3333333333333DomainRRM 1
TgeneMTCH2chr11:47494639chr11:47660602ENST00000302503013118_20629304.0RepeatNote=Solcar 2
TgeneMTCH2chr11:47494639chr11:47660603ENST00000302503013118_20629304.0RepeatNote=Solcar 2
TgeneMTCH2chr11:47494640chr11:47660603ENST00000302503013118_20629304.0RepeatNote=Solcar 2
TgeneMTCH2chr11:47494639chr11:47660602ENST00000302503013175_19529304.0TransmembraneHelical
TgeneMTCH2chr11:47494639chr11:47660602ENST00000302503013224_24429304.0TransmembraneHelical
TgeneMTCH2chr11:47494639chr11:47660603ENST00000302503013175_19529304.0TransmembraneHelical
TgeneMTCH2chr11:47494639chr11:47660603ENST00000302503013224_24429304.0TransmembraneHelical
TgeneMTCH2chr11:47494640chr11:47660603ENST00000302503013175_19529304.0TransmembraneHelical
TgeneMTCH2chr11:47494640chr11:47660603ENST00000302503013224_24429304.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCELF1chr11:47494639chr11:47660602ENST00000310513-1214401_479440596.6666666666666DomainRRM 3
HgeneCELF1chr11:47494639chr11:47660602ENST00000358597-1113401_479444658.3333333333334DomainRRM 3
HgeneCELF1chr11:47494639chr11:47660602ENST00000361904-1113401_479441475.0DomainRRM 3
HgeneCELF1chr11:47494639chr11:47660602ENST00000395290-1113401_4794432504.3333333333335DomainRRM 3
HgeneCELF1chr11:47494639chr11:47660602ENST00000395292-1214401_479441579.6666666666666DomainRRM 3
HgeneCELF1chr11:47494639chr11:47660602ENST00000532048-1416401_479470488.3333333333333DomainRRM 3
HgeneCELF1chr11:47494639chr11:47660603ENST00000310513-1214401_479440596.6666666666666DomainRRM 3
HgeneCELF1chr11:47494639chr11:47660603ENST00000358597-1113401_479444658.3333333333334DomainRRM 3
HgeneCELF1chr11:47494639chr11:47660603ENST00000361904-1113401_479441475.0DomainRRM 3
HgeneCELF1chr11:47494639chr11:47660603ENST00000395290-1113401_4794432504.3333333333335DomainRRM 3
HgeneCELF1chr11:47494639chr11:47660603ENST00000395292-1214401_479441579.6666666666666DomainRRM 3
HgeneCELF1chr11:47494639chr11:47660603ENST00000532048-1416401_479470488.3333333333333DomainRRM 3
HgeneCELF1chr11:47494640chr11:47660603ENST00000310513-1214401_479440596.6666666666666DomainRRM 3
HgeneCELF1chr11:47494640chr11:47660603ENST00000358597-1113401_479444658.3333333333334DomainRRM 3
HgeneCELF1chr11:47494640chr11:47660603ENST00000361904-1113401_479441475.0DomainRRM 3
HgeneCELF1chr11:47494640chr11:47660603ENST00000395290-1113401_4794432504.3333333333335DomainRRM 3
HgeneCELF1chr11:47494640chr11:47660603ENST00000395292-1214401_479441579.6666666666666DomainRRM 3
HgeneCELF1chr11:47494640chr11:47660603ENST00000532048-1416401_479470488.3333333333333DomainRRM 3
TgeneMTCH2chr11:47494639chr11:47660602ENST000003025030132_9829304.0RepeatNote=Solcar 1
TgeneMTCH2chr11:47494639chr11:47660603ENST000003025030132_9829304.0RepeatNote=Solcar 1
TgeneMTCH2chr11:47494640chr11:47660603ENST000003025030132_9829304.0RepeatNote=Solcar 1
TgeneMTCH2chr11:47494639chr11:47660602ENST000003025030138_2829304.0TransmembraneHelical
TgeneMTCH2chr11:47494639chr11:47660603ENST000003025030138_2829304.0TransmembraneHelical
TgeneMTCH2chr11:47494640chr11:47660603ENST000003025030138_2829304.0TransmembraneHelical


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Fusion Gene Sequence for CELF1-MTCH2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>15591_15591_1_CELF1-MTCH2_CELF1_chr11_47494639_ENST00000310513_MTCH2_chr11_47660602_ENST00000302503_length(transcript)=3799nt_BP=1457nt
GGCAGCGGCAGCGGCGGCGGGACGCGGAGGCTCCCCCGGGATTCGGCCTCAGCAGCGAGGCGGCGGCGGCGGCTGCGGAGGCGCAGGCAG
CAACTGAGGCAGCGGCAGGCTCAGGTGCAGCCGCTGCTCAAAGAAAATGAACGGCACCCTGGACCACCCAGACCAACCAGATCTTGATGC
TATCAAGATGTTTGTGGGCCAGGTTCCAAGGACCTGGTCTGAAAAGGACTTGCGGGAACTCTTCGAACAGTATGGTGCTGTGTATGAAAT
CAACGTCCTAAGGGATAGGAGCCAAAACCCGCCTCAGAGCAAAGGGTGCTGTTTTGTTACATTTTACACCCGTAAAGCTGCATTAGAAGC
TCAGAATGCTCTTCACAACATGAAAGTCCTCCCAGGGATGCATCACCCTATACAGATGAAACCTGCTGACAGTGAGAAGAACAATGCAGT
GGAAGACAGGAAGCTGTTTATTGGTATGATTTCCAAGAAGTGCACTGAAAATGACATCCGAGTCATGTTCTCTTCGTTTGGACAGATTGA
AGAATGCCGGATATTGCGGGGACCTGATGGCCTGAGCCGAGGTTGTGCATTTGTGACTTTTACAACAAGAGCCATGGCACAGACGGCTAT
CAAGGCAATGCACCAAGCACAGACCATGGAGGGTTGCTCATCACCCATGGTGGTAAAATTTGCTGATACACAGAAGGACAAAGAACAGAA
GAGAATGGCCCAGCAGCTCCAGCAGCAGATGCAGCAAATCAGCGCAGCATCTGTGTGGGGAAACCTTGCTGGTCTAAATACTCTTGGACC
CCAGTATTTAGCACTCCTTCAGCAGACTGCCTCCTCTGGGAACCTCAACACCCTGAGCAGCCTCCACCCAATGGGAGGGTTGAATGCAAT
GCAGTTACAGAATTTGGCTGCACTAGCTGCTGCAGCTAGTGCAGCTCAGAACACACCAAGTGGTACCAATGCTCTCACTACATCCAGCAG
TCCCCTCAGCGTGCTCACTAGTTCAGGGTCCTCACCTAGCTCTAGCAGCAGTAATTCTGTCAACCCCATAGCCTCACTTGGAGCCCTGCA
GACATTAGCTGGAGCAACGGCTGGCCTCAATGTTGGCTCTTTGGCAGGAATGGCTGCTTTAAATGGTGGCCTGGGCAGCAGTGGCCTTTC
CAATGGCACCGGGAGCACCATGGAGGCCCTCACTCAGGCCTACTCGGGTATCCAGCAATATGCTGCTGCTGCGCTCCCCACTCTGTACAA
CCAGAATCTTCTGACACAGCAGAGTATTGGTGCTGCTGGAAGCCAGAAGGAAGGTCCAGAGGGAGCCAACCTGTTCATCTACCACCTGCC
CCAGGAGTTTGGTGATCAGGACCTGCTGCAGATGTTTATGCCCTTTGGGAATGTCGTGTCTGCCAAGGTTTTCATAGACAAGCAGACAAA
CCTGAGCAAGTGTTTTGGTGGGATATGAGCCTCTTCCTCCAACAATAGGACGAAATATTTTTGGGCGGCAAGTGTGTCAGCTTCCTGGTC
TCTTTAGTTATGCTCAGCACATTGCCAGTATCGATGGGAGGCGCGGGTTGTTCACAGGCTTAACTCCAAGACTGTGTTCGGGAGTCCTTG
GAACTGTGGTCCATGGTAAAGTTTTACAGCATTACCAGGAGAGTGACAAGGGTGAGGAGTTAGGACCTGGAAATGTACAGAAAGAAGTCT
CATCTTCCTTTGACCACGTTATCAAGGAGACAACTCGAGAGATGATCGCTCGTTCTGCTGCTACCCTCATCACACATCCCTTCCATGTGA
TCACTCTGAGATCTATGGTACAGTTCATTGGCAGAGAATCCAAGTACTGTGGACTTTGTGATTCCATAATAACCATCTATCGGGAAGAGG
GCATTCTAGGATTTTTCGCGGGTCTTGTTCCTCGCCTTCTAGGTGACATCCTTTCTTTGTGGCTGTGTAACTCACTGGCCTACCTCGTCA
ATACCTATGCACTGGACAGTGGGGTTTCTACCATGAATGAAATGAAGAGTTATTCTCAAGCTGTCACAGGATTTTTTGCGAGTATGTTGA
CCTATCCCTTTGTGCTTGTCTCCAATCTTATGGCTGTCAACAACTGTGGTCTTGCTGGTGGATGCCCTCCTTACTCCCCAATATATACGT
CTTGGATAGACTGTTGGTGCATGCTACAAAAAGAGGGGAATATGAGCCGAGGAAATAGCTTATTTTTCCGGAAGGTCCCCTTTGGGAAGA
CTTATTGTTGTGACCTGAAAATGTTAATTTGAAGATGTGGGGCAGGGACAGTGACATTTCTGTAGTCCCAGATGCACAGAATTATGGGAG
AGAATGTTGATTTCTATACAGTGTGGCGCGCTTTTTTAATAATCATTTAATCTTGGGAAAATTCAGGTGTTTGGTGTCTGCCTTTTTTGT
TCTTTTTTCCAGCACAACATAACTTACCACTGATACTCCCCCTTTAGTTATTCTGAATTAGGATATTTTTGCTCCAAATTCTTATTTTAC
TTAACCAGAAGGGAAAAAAAGTTGTATTTTCCTGAAGCTACAGGCACTTTGTCATGTGATTTTTGAGTCTCAATTTAAGGCTTTGTAAAA
TGAAGAGTAGAATTCCAAGAAAAATGAGAAATAATTTTGTAAAACTTAACAAAATCACTAAATTAAACTATATGGGAGGTTATGAATTAC
TTTTTCTTGGGTAGACCCTAAAATGTCAGTAGCATGCACCAGAATCTGACTCCCATTATGCTTCTAAGCACATTTCATTGACCTTGTCTC
TCATACTTCAAGAAAAGGACAGTACATTGCTACATTACCCTAGAAAGTCTGTGTGAGGATCTGCCCCTTCAGTCTGTTATTGCAAAGTAA
TAAAATGTCACCTACAGGGAGCCTCTGAGCCTACTCTAGTTCAAGAGGCTACCTGAAAAAAAATAAATAAGATAAAGGGTCAGCAACAAC
AAAGAAAAAGACAATTACAGAAAATAAGCAAGATTTGGAAAGGAAGTATAATGGCACTTTTTTCCTCAAAGGAAGTTCTTGTTTTCACAT
AAAATATGAAAAGCAGATCCTGCAGGAGTAACCCCCTTCTTTAAGAGCCAAGTATTTGCCAGTGCTTAAATTACACCATACAGTTCTAAT
TATATATAATCTTTTGTTCTTCAGTTTTTTGTTTTGTTTCCTTTTTGTTATTGTTGCCGAAGGTGAGTAGTTTTGCATTTCTGATGACAG
CCTTGGAAAGTATATTTGTAACTCCATGTCTGGTAATGCCAACCCAAGTCGACATGGGTCTTAGGACACTGACCACCTCACATGCCATAC
CCTCAGTTAAGCATGTTAACATTTATAGGAGGAAAAAAATCACTTTGGGAGAAAATAAAATTCAACTCAAGCATAAAGCTTCTGTTTACT
CAGGCCTTCTAAAAAGCAGGTTAAAATGCTCTAAAATGAGAAAGCCTGTGGTTTCACTTATTTATATAACTCACTGGGACATTGCCAAAT
GAGTAAGCACTTAATTCGCTGCTTCTGAGACTTCTCTGTCAAAACAGCCCCACTGATAATATTAGACAGAACGAGAATGCAGGGGTCTCT
TCCCTCCCCTGGGGTTTAGGAAGCTCATGAGGAGCTCGGCTTAAAATGTCTTTGATGTCTCTTCCTTTGTCTCAAAAAGTAATGTCAATT
TTATATACTATTTCAATATTACTATCTGCATTTGTTTTAATATAAAAATGTTTGCTGCCTACCTTTTTCTCCCAAAAAATCTTTAAGTAA

>15591_15591_1_CELF1-MTCH2_CELF1_chr11_47494639_ENST00000310513_MTCH2_chr11_47660602_ENST00000302503_length(amino acids)=443AA_BP=
MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH
PIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP
MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAA
QNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYS

--------------------------------------------------------------
>15591_15591_2_CELF1-MTCH2_CELF1_chr11_47494639_ENST00000310513_MTCH2_chr11_47660603_ENST00000302503_length(transcript)=3799nt_BP=1457nt
GGCAGCGGCAGCGGCGGCGGGACGCGGAGGCTCCCCCGGGATTCGGCCTCAGCAGCGAGGCGGCGGCGGCGGCTGCGGAGGCGCAGGCAG
CAACTGAGGCAGCGGCAGGCTCAGGTGCAGCCGCTGCTCAAAGAAAATGAACGGCACCCTGGACCACCCAGACCAACCAGATCTTGATGC
TATCAAGATGTTTGTGGGCCAGGTTCCAAGGACCTGGTCTGAAAAGGACTTGCGGGAACTCTTCGAACAGTATGGTGCTGTGTATGAAAT
CAACGTCCTAAGGGATAGGAGCCAAAACCCGCCTCAGAGCAAAGGGTGCTGTTTTGTTACATTTTACACCCGTAAAGCTGCATTAGAAGC
TCAGAATGCTCTTCACAACATGAAAGTCCTCCCAGGGATGCATCACCCTATACAGATGAAACCTGCTGACAGTGAGAAGAACAATGCAGT
GGAAGACAGGAAGCTGTTTATTGGTATGATTTCCAAGAAGTGCACTGAAAATGACATCCGAGTCATGTTCTCTTCGTTTGGACAGATTGA
AGAATGCCGGATATTGCGGGGACCTGATGGCCTGAGCCGAGGTTGTGCATTTGTGACTTTTACAACAAGAGCCATGGCACAGACGGCTAT
CAAGGCAATGCACCAAGCACAGACCATGGAGGGTTGCTCATCACCCATGGTGGTAAAATTTGCTGATACACAGAAGGACAAAGAACAGAA
GAGAATGGCCCAGCAGCTCCAGCAGCAGATGCAGCAAATCAGCGCAGCATCTGTGTGGGGAAACCTTGCTGGTCTAAATACTCTTGGACC
CCAGTATTTAGCACTCCTTCAGCAGACTGCCTCCTCTGGGAACCTCAACACCCTGAGCAGCCTCCACCCAATGGGAGGGTTGAATGCAAT
GCAGTTACAGAATTTGGCTGCACTAGCTGCTGCAGCTAGTGCAGCTCAGAACACACCAAGTGGTACCAATGCTCTCACTACATCCAGCAG
TCCCCTCAGCGTGCTCACTAGTTCAGGGTCCTCACCTAGCTCTAGCAGCAGTAATTCTGTCAACCCCATAGCCTCACTTGGAGCCCTGCA
GACATTAGCTGGAGCAACGGCTGGCCTCAATGTTGGCTCTTTGGCAGGAATGGCTGCTTTAAATGGTGGCCTGGGCAGCAGTGGCCTTTC
CAATGGCACCGGGAGCACCATGGAGGCCCTCACTCAGGCCTACTCGGGTATCCAGCAATATGCTGCTGCTGCGCTCCCCACTCTGTACAA
CCAGAATCTTCTGACACAGCAGAGTATTGGTGCTGCTGGAAGCCAGAAGGAAGGTCCAGAGGGAGCCAACCTGTTCATCTACCACCTGCC
CCAGGAGTTTGGTGATCAGGACCTGCTGCAGATGTTTATGCCCTTTGGGAATGTCGTGTCTGCCAAGGTTTTCATAGACAAGCAGACAAA
CCTGAGCAAGTGTTTTGGTGGGATATGAGCCTCTTCCTCCAACAATAGGACGAAATATTTTTGGGCGGCAAGTGTGTCAGCTTCCTGGTC
TCTTTAGTTATGCTCAGCACATTGCCAGTATCGATGGGAGGCGCGGGTTGTTCACAGGCTTAACTCCAAGACTGTGTTCGGGAGTCCTTG
GAACTGTGGTCCATGGTAAAGTTTTACAGCATTACCAGGAGAGTGACAAGGGTGAGGAGTTAGGACCTGGAAATGTACAGAAAGAAGTCT
CATCTTCCTTTGACCACGTTATCAAGGAGACAACTCGAGAGATGATCGCTCGTTCTGCTGCTACCCTCATCACACATCCCTTCCATGTGA
TCACTCTGAGATCTATGGTACAGTTCATTGGCAGAGAATCCAAGTACTGTGGACTTTGTGATTCCATAATAACCATCTATCGGGAAGAGG
GCATTCTAGGATTTTTCGCGGGTCTTGTTCCTCGCCTTCTAGGTGACATCCTTTCTTTGTGGCTGTGTAACTCACTGGCCTACCTCGTCA
ATACCTATGCACTGGACAGTGGGGTTTCTACCATGAATGAAATGAAGAGTTATTCTCAAGCTGTCACAGGATTTTTTGCGAGTATGTTGA
CCTATCCCTTTGTGCTTGTCTCCAATCTTATGGCTGTCAACAACTGTGGTCTTGCTGGTGGATGCCCTCCTTACTCCCCAATATATACGT
CTTGGATAGACTGTTGGTGCATGCTACAAAAAGAGGGGAATATGAGCCGAGGAAATAGCTTATTTTTCCGGAAGGTCCCCTTTGGGAAGA
CTTATTGTTGTGACCTGAAAATGTTAATTTGAAGATGTGGGGCAGGGACAGTGACATTTCTGTAGTCCCAGATGCACAGAATTATGGGAG
AGAATGTTGATTTCTATACAGTGTGGCGCGCTTTTTTAATAATCATTTAATCTTGGGAAAATTCAGGTGTTTGGTGTCTGCCTTTTTTGT
TCTTTTTTCCAGCACAACATAACTTACCACTGATACTCCCCCTTTAGTTATTCTGAATTAGGATATTTTTGCTCCAAATTCTTATTTTAC
TTAACCAGAAGGGAAAAAAAGTTGTATTTTCCTGAAGCTACAGGCACTTTGTCATGTGATTTTTGAGTCTCAATTTAAGGCTTTGTAAAA
TGAAGAGTAGAATTCCAAGAAAAATGAGAAATAATTTTGTAAAACTTAACAAAATCACTAAATTAAACTATATGGGAGGTTATGAATTAC
TTTTTCTTGGGTAGACCCTAAAATGTCAGTAGCATGCACCAGAATCTGACTCCCATTATGCTTCTAAGCACATTTCATTGACCTTGTCTC
TCATACTTCAAGAAAAGGACAGTACATTGCTACATTACCCTAGAAAGTCTGTGTGAGGATCTGCCCCTTCAGTCTGTTATTGCAAAGTAA
TAAAATGTCACCTACAGGGAGCCTCTGAGCCTACTCTAGTTCAAGAGGCTACCTGAAAAAAAATAAATAAGATAAAGGGTCAGCAACAAC
AAAGAAAAAGACAATTACAGAAAATAAGCAAGATTTGGAAAGGAAGTATAATGGCACTTTTTTCCTCAAAGGAAGTTCTTGTTTTCACAT
AAAATATGAAAAGCAGATCCTGCAGGAGTAACCCCCTTCTTTAAGAGCCAAGTATTTGCCAGTGCTTAAATTACACCATACAGTTCTAAT
TATATATAATCTTTTGTTCTTCAGTTTTTTGTTTTGTTTCCTTTTTGTTATTGTTGCCGAAGGTGAGTAGTTTTGCATTTCTGATGACAG
CCTTGGAAAGTATATTTGTAACTCCATGTCTGGTAATGCCAACCCAAGTCGACATGGGTCTTAGGACACTGACCACCTCACATGCCATAC
CCTCAGTTAAGCATGTTAACATTTATAGGAGGAAAAAAATCACTTTGGGAGAAAATAAAATTCAACTCAAGCATAAAGCTTCTGTTTACT
CAGGCCTTCTAAAAAGCAGGTTAAAATGCTCTAAAATGAGAAAGCCTGTGGTTTCACTTATTTATATAACTCACTGGGACATTGCCAAAT
GAGTAAGCACTTAATTCGCTGCTTCTGAGACTTCTCTGTCAAAACAGCCCCACTGATAATATTAGACAGAACGAGAATGCAGGGGTCTCT
TCCCTCCCCTGGGGTTTAGGAAGCTCATGAGGAGCTCGGCTTAAAATGTCTTTGATGTCTCTTCCTTTGTCTCAAAAAGTAATGTCAATT
TTATATACTATTTCAATATTACTATCTGCATTTGTTTTAATATAAAAATGTTTGCTGCCTACCTTTTTCTCCCAAAAAATCTTTAAGTAA

>15591_15591_2_CELF1-MTCH2_CELF1_chr11_47494639_ENST00000310513_MTCH2_chr11_47660603_ENST00000302503_length(amino acids)=443AA_BP=
MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH
PIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP
MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAA
QNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYS

--------------------------------------------------------------
>15591_15591_3_CELF1-MTCH2_CELF1_chr11_47494640_ENST00000310513_MTCH2_chr11_47660603_ENST00000302503_length(transcript)=3799nt_BP=1457nt
GGCAGCGGCAGCGGCGGCGGGACGCGGAGGCTCCCCCGGGATTCGGCCTCAGCAGCGAGGCGGCGGCGGCGGCTGCGGAGGCGCAGGCAG
CAACTGAGGCAGCGGCAGGCTCAGGTGCAGCCGCTGCTCAAAGAAAATGAACGGCACCCTGGACCACCCAGACCAACCAGATCTTGATGC
TATCAAGATGTTTGTGGGCCAGGTTCCAAGGACCTGGTCTGAAAAGGACTTGCGGGAACTCTTCGAACAGTATGGTGCTGTGTATGAAAT
CAACGTCCTAAGGGATAGGAGCCAAAACCCGCCTCAGAGCAAAGGGTGCTGTTTTGTTACATTTTACACCCGTAAAGCTGCATTAGAAGC
TCAGAATGCTCTTCACAACATGAAAGTCCTCCCAGGGATGCATCACCCTATACAGATGAAACCTGCTGACAGTGAGAAGAACAATGCAGT
GGAAGACAGGAAGCTGTTTATTGGTATGATTTCCAAGAAGTGCACTGAAAATGACATCCGAGTCATGTTCTCTTCGTTTGGACAGATTGA
AGAATGCCGGATATTGCGGGGACCTGATGGCCTGAGCCGAGGTTGTGCATTTGTGACTTTTACAACAAGAGCCATGGCACAGACGGCTAT
CAAGGCAATGCACCAAGCACAGACCATGGAGGGTTGCTCATCACCCATGGTGGTAAAATTTGCTGATACACAGAAGGACAAAGAACAGAA
GAGAATGGCCCAGCAGCTCCAGCAGCAGATGCAGCAAATCAGCGCAGCATCTGTGTGGGGAAACCTTGCTGGTCTAAATACTCTTGGACC
CCAGTATTTAGCACTCCTTCAGCAGACTGCCTCCTCTGGGAACCTCAACACCCTGAGCAGCCTCCACCCAATGGGAGGGTTGAATGCAAT
GCAGTTACAGAATTTGGCTGCACTAGCTGCTGCAGCTAGTGCAGCTCAGAACACACCAAGTGGTACCAATGCTCTCACTACATCCAGCAG
TCCCCTCAGCGTGCTCACTAGTTCAGGGTCCTCACCTAGCTCTAGCAGCAGTAATTCTGTCAACCCCATAGCCTCACTTGGAGCCCTGCA
GACATTAGCTGGAGCAACGGCTGGCCTCAATGTTGGCTCTTTGGCAGGAATGGCTGCTTTAAATGGTGGCCTGGGCAGCAGTGGCCTTTC
CAATGGCACCGGGAGCACCATGGAGGCCCTCACTCAGGCCTACTCGGGTATCCAGCAATATGCTGCTGCTGCGCTCCCCACTCTGTACAA
CCAGAATCTTCTGACACAGCAGAGTATTGGTGCTGCTGGAAGCCAGAAGGAAGGTCCAGAGGGAGCCAACCTGTTCATCTACCACCTGCC
CCAGGAGTTTGGTGATCAGGACCTGCTGCAGATGTTTATGCCCTTTGGGAATGTCGTGTCTGCCAAGGTTTTCATAGACAAGCAGACAAA
CCTGAGCAAGTGTTTTGGTGGGATATGAGCCTCTTCCTCCAACAATAGGACGAAATATTTTTGGGCGGCAAGTGTGTCAGCTTCCTGGTC
TCTTTAGTTATGCTCAGCACATTGCCAGTATCGATGGGAGGCGCGGGTTGTTCACAGGCTTAACTCCAAGACTGTGTTCGGGAGTCCTTG
GAACTGTGGTCCATGGTAAAGTTTTACAGCATTACCAGGAGAGTGACAAGGGTGAGGAGTTAGGACCTGGAAATGTACAGAAAGAAGTCT
CATCTTCCTTTGACCACGTTATCAAGGAGACAACTCGAGAGATGATCGCTCGTTCTGCTGCTACCCTCATCACACATCCCTTCCATGTGA
TCACTCTGAGATCTATGGTACAGTTCATTGGCAGAGAATCCAAGTACTGTGGACTTTGTGATTCCATAATAACCATCTATCGGGAAGAGG
GCATTCTAGGATTTTTCGCGGGTCTTGTTCCTCGCCTTCTAGGTGACATCCTTTCTTTGTGGCTGTGTAACTCACTGGCCTACCTCGTCA
ATACCTATGCACTGGACAGTGGGGTTTCTACCATGAATGAAATGAAGAGTTATTCTCAAGCTGTCACAGGATTTTTTGCGAGTATGTTGA
CCTATCCCTTTGTGCTTGTCTCCAATCTTATGGCTGTCAACAACTGTGGTCTTGCTGGTGGATGCCCTCCTTACTCCCCAATATATACGT
CTTGGATAGACTGTTGGTGCATGCTACAAAAAGAGGGGAATATGAGCCGAGGAAATAGCTTATTTTTCCGGAAGGTCCCCTTTGGGAAGA
CTTATTGTTGTGACCTGAAAATGTTAATTTGAAGATGTGGGGCAGGGACAGTGACATTTCTGTAGTCCCAGATGCACAGAATTATGGGAG
AGAATGTTGATTTCTATACAGTGTGGCGCGCTTTTTTAATAATCATTTAATCTTGGGAAAATTCAGGTGTTTGGTGTCTGCCTTTTTTGT
TCTTTTTTCCAGCACAACATAACTTACCACTGATACTCCCCCTTTAGTTATTCTGAATTAGGATATTTTTGCTCCAAATTCTTATTTTAC
TTAACCAGAAGGGAAAAAAAGTTGTATTTTCCTGAAGCTACAGGCACTTTGTCATGTGATTTTTGAGTCTCAATTTAAGGCTTTGTAAAA
TGAAGAGTAGAATTCCAAGAAAAATGAGAAATAATTTTGTAAAACTTAACAAAATCACTAAATTAAACTATATGGGAGGTTATGAATTAC
TTTTTCTTGGGTAGACCCTAAAATGTCAGTAGCATGCACCAGAATCTGACTCCCATTATGCTTCTAAGCACATTTCATTGACCTTGTCTC
TCATACTTCAAGAAAAGGACAGTACATTGCTACATTACCCTAGAAAGTCTGTGTGAGGATCTGCCCCTTCAGTCTGTTATTGCAAAGTAA
TAAAATGTCACCTACAGGGAGCCTCTGAGCCTACTCTAGTTCAAGAGGCTACCTGAAAAAAAATAAATAAGATAAAGGGTCAGCAACAAC
AAAGAAAAAGACAATTACAGAAAATAAGCAAGATTTGGAAAGGAAGTATAATGGCACTTTTTTCCTCAAAGGAAGTTCTTGTTTTCACAT
AAAATATGAAAAGCAGATCCTGCAGGAGTAACCCCCTTCTTTAAGAGCCAAGTATTTGCCAGTGCTTAAATTACACCATACAGTTCTAAT
TATATATAATCTTTTGTTCTTCAGTTTTTTGTTTTGTTTCCTTTTTGTTATTGTTGCCGAAGGTGAGTAGTTTTGCATTTCTGATGACAG
CCTTGGAAAGTATATTTGTAACTCCATGTCTGGTAATGCCAACCCAAGTCGACATGGGTCTTAGGACACTGACCACCTCACATGCCATAC
CCTCAGTTAAGCATGTTAACATTTATAGGAGGAAAAAAATCACTTTGGGAGAAAATAAAATTCAACTCAAGCATAAAGCTTCTGTTTACT
CAGGCCTTCTAAAAAGCAGGTTAAAATGCTCTAAAATGAGAAAGCCTGTGGTTTCACTTATTTATATAACTCACTGGGACATTGCCAAAT
GAGTAAGCACTTAATTCGCTGCTTCTGAGACTTCTCTGTCAAAACAGCCCCACTGATAATATTAGACAGAACGAGAATGCAGGGGTCTCT
TCCCTCCCCTGGGGTTTAGGAAGCTCATGAGGAGCTCGGCTTAAAATGTCTTTGATGTCTCTTCCTTTGTCTCAAAAAGTAATGTCAATT
TTATATACTATTTCAATATTACTATCTGCATTTGTTTTAATATAAAAATGTTTGCTGCCTACCTTTTTCTCCCAAAAAATCTTTAAGTAA

>15591_15591_3_CELF1-MTCH2_CELF1_chr11_47494640_ENST00000310513_MTCH2_chr11_47660603_ENST00000302503_length(amino acids)=443AA_BP=
MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH
PIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP
MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAA
QNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSNGTGSTMEALTQAYS

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Fusion Gene PPI Analysis for CELF1-MTCH2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for CELF1-MTCH2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for CELF1-MTCH2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneC0028754Obesity1CTD_human