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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:CHP1-RAD51 (FusionGDB2 ID:HG11261TG5888) |
Fusion Gene Summary for CHP1-RAD51 |
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Fusion gene information | Fusion gene name: CHP1-RAD51 | Fusion gene ID: hg11261tg5888 | Hgene | Tgene | Gene symbol | CHP1 | RAD51 | Gene ID | 11261 | 5888 |
Gene name | calcineurin like EF-hand protein 1 | RAD51 recombinase | |
Synonyms | CHP|SLC9A1BP|SPAX9|Sid470p|p22|p24 | BRCC5|FANCR|HRAD51|HsRad51|HsT16930|MRMV2|RAD51A|RECA | |
Cytomap | ('CHP1')('RAD51') 15q15.1 | 15q15.1 | |
Type of gene | protein-coding | protein-coding | |
Description | calcineurin B homologous protein 1EF-hand calcium-binding domain-containing protein p22SLC9A1 binding proteincalcineurin B homologcalcineurin B-like proteincalcineurin homologous proteincalcium binding protein P22calcium-binding protein CHPcalcium | DNA repair protein RAD51 homolog 1BRCA1/BRCA2-containing complex, subunit 5RAD51 homolog ARecA, E. coli, homolog ofRecA-like proteinrecombination protein A | |
Modification date | 20200313 | 20200322 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000558351, ENST00000334660, ENST00000560397, | ||
Fusion gene scores | * DoF score | 11 X 13 X 7=1001 | 7 X 7 X 5=245 |
# samples | 15 | 7 | |
** MAII score | log2(15/1001*10)=-2.73840756834011 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/245*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: CHP1 [Title/Abstract] AND RAD51 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | CHP1(41562816)-RAD51(41011003), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | CHP1-RAD51 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CHP1-RAD51 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CHP1-RAD51 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. CHP1-RAD51 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CHP1 | GO:0010923 | negative regulation of phosphatase activity | 10593895 |
Hgene | CHP1 | GO:0032088 | negative regulation of NF-kappaB transcription factor activity | 10593895 |
Hgene | CHP1 | GO:0032417 | positive regulation of sodium:proton antiporter activity | 8901634|11350981 |
Hgene | CHP1 | GO:0042308 | negative regulation of protein import into nucleus | 10593895 |
Hgene | CHP1 | GO:0051453 | regulation of intracellular pH | 8901634|15035633 |
Hgene | CHP1 | GO:0070885 | negative regulation of calcineurin-NFAT signaling cascade | 10593895 |
Tgene | RAD51 | GO:0000724 | double-strand break repair via homologous recombination | 16428451 |
Tgene | RAD51 | GO:0006268 | DNA unwinding involved in DNA replication | 7988572 |
Tgene | RAD51 | GO:0006974 | cellular response to DNA damage stimulus | 23509288|25585578 |
Tgene | RAD51 | GO:0010569 | regulation of double-strand break repair via homologous recombination | 23754376 |
Tgene | RAD51 | GO:0031297 | replication fork processing | 25585578 |
Tgene | RAD51 | GO:0051106 | positive regulation of DNA ligation | 8929543 |
Tgene | RAD51 | GO:0071479 | cellular response to ionizing radiation | 23509288|23754376 |
Tgene | RAD51 | GO:0072757 | cellular response to camptothecin | 23509288 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUAD | TCGA-55-8085-01A | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
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Fusion Gene ORF analysis for CHP1-RAD51 |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-3CDS | ENST00000558351 | ENST00000267868 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
3UTR-3CDS | ENST00000558351 | ENST00000423169 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
3UTR-intron | ENST00000558351 | ENST00000382643 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
3UTR-intron | ENST00000558351 | ENST00000530766 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
3UTR-intron | ENST00000558351 | ENST00000532743 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
3UTR-intron | ENST00000558351 | ENST00000557850 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
5CDS-intron | ENST00000334660 | ENST00000382643 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
5CDS-intron | ENST00000334660 | ENST00000530766 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
5CDS-intron | ENST00000334660 | ENST00000532743 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
5CDS-intron | ENST00000334660 | ENST00000557850 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
5CDS-intron | ENST00000560397 | ENST00000382643 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
5CDS-intron | ENST00000560397 | ENST00000530766 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
5CDS-intron | ENST00000560397 | ENST00000532743 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
5CDS-intron | ENST00000560397 | ENST00000557850 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
In-frame | ENST00000334660 | ENST00000267868 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
In-frame | ENST00000334660 | ENST00000423169 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
In-frame | ENST00000560397 | ENST00000267868 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
In-frame | ENST00000560397 | ENST00000423169 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000334660 | CHP1 | chr15 | 41562816 | + | ENST00000423169 | RAD51 | chr15 | 41011003 | + | 1528 | 651 | 63 | 1058 | 331 |
ENST00000334660 | CHP1 | chr15 | 41562816 | + | ENST00000267868 | RAD51 | chr15 | 41011003 | + | 2214 | 651 | 63 | 1235 | 390 |
ENST00000560397 | CHP1 | chr15 | 41562816 | + | ENST00000423169 | RAD51 | chr15 | 41011003 | + | 1378 | 501 | 0 | 908 | 302 |
ENST00000560397 | CHP1 | chr15 | 41562816 | + | ENST00000267868 | RAD51 | chr15 | 41011003 | + | 2064 | 501 | 0 | 1085 | 361 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000334660 | ENST00000423169 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + | 0.00143779 | 0.9985623 |
ENST00000334660 | ENST00000267868 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + | 0.000817646 | 0.9991823 |
ENST00000560397 | ENST00000423169 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + | 0.001148936 | 0.99885106 |
ENST00000560397 | ENST00000267868 | CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011003 | + | 0.00069662 | 0.99930334 |
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Fusion Genomic Features for CHP1-RAD51 |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011002 | + | 5.77E-10 | 1 |
CHP1 | chr15 | 41562816 | + | RAD51 | chr15 | 41011002 | + | 5.77E-10 | 1 |
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Fusion Protein Features for CHP1-RAD51 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr15:41562816/chr15:41011003) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CHP1 | chr15:41562816 | chr15:41011003 | ENST00000334660 | + | 5 | 7 | 123_134 | 137 | 196.0 | Calcium binding | Note=1 |
Hgene | CHP1 | chr15:41562816 | chr15:41011003 | ENST00000334660 | + | 5 | 7 | 26_61 | 137 | 196.0 | Domain | EF-hand 1 |
Hgene | CHP1 | chr15:41562816 | chr15:41011003 | ENST00000334660 | + | 5 | 7 | 66_101 | 137 | 196.0 | Domain | EF-hand 2 |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000557850 | 0 | 8 | 48_77 | 0 | 243.0 | Domain | Note=HhH | |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000557850 | 0 | 8 | 127_134 | 0 | 243.0 | Nucleotide binding | ATP |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CHP1 | chr15:41562816 | chr15:41011003 | ENST00000334660 | + | 5 | 7 | 164_175 | 137 | 196.0 | Calcium binding | Note=2 |
Hgene | CHP1 | chr15:41562816 | chr15:41011003 | ENST00000334660 | + | 5 | 7 | 110_145 | 137 | 196.0 | Domain | EF-hand 3 |
Hgene | CHP1 | chr15:41562816 | chr15:41011003 | ENST00000334660 | + | 5 | 7 | 151_186 | 137 | 196.0 | Domain | EF-hand 4 |
Hgene | CHP1 | chr15:41562816 | chr15:41011003 | ENST00000334660 | + | 5 | 7 | 138_147 | 137 | 196.0 | Motif | Nuclear export signal 1 |
Hgene | CHP1 | chr15:41562816 | chr15:41011003 | ENST00000334660 | + | 5 | 7 | 176_185 | 137 | 196.0 | Motif | Nuclear export signal 2 |
Hgene | CHP1 | chr15:41562816 | chr15:41011003 | ENST00000334660 | + | 5 | 7 | 143_185 | 137 | 196.0 | Region | Note=Necessary for nuclear export signal |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000267868 | 4 | 10 | 48_77 | 145 | 340.0 | Domain | Note=HhH | |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000382643 | 4 | 10 | 48_77 | 146 | 341.0 | Domain | Note=HhH | |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000423169 | 4 | 9 | 48_77 | 145 | 281.0 | Domain | Note=HhH | |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000532743 | 4 | 10 | 48_77 | 146 | 341.0 | Domain | Note=HhH | |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000267868 | 4 | 10 | 127_134 | 145 | 340.0 | Nucleotide binding | ATP | |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000382643 | 4 | 10 | 127_134 | 146 | 341.0 | Nucleotide binding | ATP | |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000423169 | 4 | 9 | 127_134 | 145 | 281.0 | Nucleotide binding | ATP | |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000532743 | 4 | 10 | 127_134 | 146 | 341.0 | Nucleotide binding | ATP |
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Fusion Gene Sequence for CHP1-RAD51 |
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>16610_16610_1_CHP1-RAD51_CHP1_chr15_41562816_ENST00000334660_RAD51_chr15_41011003_ENST00000267868_length(transcript)=2214nt_BP=651nt CATTCGGGGCTGGAACTCGAACGCTGACGTTGGCTCCTGAGCCGGGCGCTGCCTCGCGCCTGATTGGCGGGTCCTCGGGGCCGCCCTCCC CAGCGCACCACCCCTGGGTTCCCTCCCGGGTCCGCAGTGGAAACACTGCCCTCTCCCTTCTTGACCCCTAGCCCTTCCTTCCCTCCCTCC TTCCCTCCTGTCGCCGTCTCTTCTGGCGCCGCTGCTCCCGGAGGAGCTCCCGGCACGGCGATGGGTTCTCGGGCCTCCACGTTACTGCGG GACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTTTCCCACAGTCAAATCACTCGCCTCTACAGCCGGTTCACCAGCCTGGACAAA GGAGAGAATGGGACTCTCAGCCGGGAAGATTTCCAGAGGATTCCAGAACTTGCCATCAACCCACTGGGGGACCGGATCATCAATGCCTTC TTTCCAGAGGGAGAGGACCAGGTAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGCCCCATTGAGGATAATGAAAAGAGCAAA GATGTGAATGGACCCGAACCACTCAACAGCCGAAGCAACAAACTGCACTTTGCTTTTCGACTATATGATTTGGATAAAGATGAAAAGATC TCCCGTGATGAGCTGTTACAGCTTCCCATTGACCGGGGTGGAGGTGAAGGAAAGGCCATGTACATTGACACTGAGGGTACCTTTAGGCCA GAACGGCTGCTGGCAGTGGCTGAGAGGTATGGTCTCTCTGGCAGTGATGTCCTGGATAATGTAGCATATGCTCGAGCGTTCAACACAGAC CACCAGACCCAGCTCCTTTATCAAGCATCAGCCATGATGGTAGAATCTAGGTATGCACTGCTTATTGTAGACAGTGCCACCGCCCTTTAC AGAACAGACTACTCGGGTCGAGGTGAGCTTTCAGCCAGGCAGATGCACTTGGCCAGGTTTCTGCGGATGCTTCTGCGACTCGCTGATGAG TTTGGTGTAGCAGTGGTAATCACTAATCAGGTGGTAGCTCAAGTGGATGGAGCAGCGATGTTTGCTGCTGATCCCAAAAAACCTATTGGA GGAAATATCATCGCCCATGCATCAACAACCAGATTGTATCTGAGGAAAGGAAGAGGGGAAACCAGAATCTGCAAAATCTACGACTCTCCC TGTCTTCCTGAAGCTGAAGCTATGTTCGCCATTAATGCAGATGGAGTGGGAGATGCCAAAGACTGAATCATTGGGTTTTTCCTCTGTTAA AAACCTTAAGTGCTGCAGCCTAATGAGAGTGCACTGCTCCCTGGGGTTCTCTACAGGCCTCTTCCTGTTGTGACTGCCAGGATAAAGCTT CCGGGAAAACAGCTATTATATCAGCTTTTCTGATGGTATAAACAGGAGACAGGTCAGTAGTCACAAACTGATCTAAAATGTTTATTCCTT CTGTAGTGTATTAATCTCTGTGTGTTTTCTTTGGTTTTGGAGGAGGGGTATGAAGTATCTTTGACATGGTGCCTTAGGAATGACTTGGGT TTAACAAGCTGTCTACTGGACAATCTTATGTTTCCAAGAGAACTAAAGCTGGAGAGACCTGACCCTTCTCTCACTTCTAAATTAATGGTA AAATAAAATGCCTCAGCTATGTAGCAAAGGGAATGGGTCTGCACAGATTCTTTTTTTCTGTCAGTAAAACTCTCAAGCAGGTTTTTAAGT TGTCTGTCTGAATGATCTTGTGTAAGGTTTTGGTTATGGAGTCTTGTGCCAAACCTACTAGGCCATTAGCCCTTCACCATCTACCTGCTT GGTCTTTCATTGCTAAGACTAACTCAAGATAATCCTAGAGTCTTAAAGCATTTCAGGCCAGTGTGGTGTCTTGCGCCTGTACTCCCAGCA CTTTGGGAGGCCGAGGCAGGTGGATCGCTTGAGCCCAGGAGTTTTAAGTCCAGCTTGGCCAAGGTGGTGAAATCCCATCTCTACAAAAAA TGCAGAACTTAATCTGGACACACTGTTACACGTGCCTGTAGTCCCAGCTACTCGATAGCCTGAGGTGGGAGAATCACTTAAGCCTGGAAG GTGGAAGTTGCAGTGAGTCGAGATTGCACTGCTGCATTCCAGCCAGGGTGACAGAGTGAGACCATGTTTCAAACAAGAAACATTTCAGAG >16610_16610_1_CHP1-RAD51_CHP1_chr15_41562816_ENST00000334660_RAD51_chr15_41011003_ENST00000267868_length(amino acids)=390AA_BP=26 MAGPRGRPPQRTTPGFPPGSAVETLPSPFLTPSPSFPPSFPPVAVSSGAAAPGGAPGTAMGSRASTLLRDEELEEIKKETGFSHSQITRL YSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRL YDLDKDEKISRDELLQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALL IVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGET -------------------------------------------------------------- >16610_16610_2_CHP1-RAD51_CHP1_chr15_41562816_ENST00000334660_RAD51_chr15_41011003_ENST00000423169_length(transcript)=1528nt_BP=651nt CATTCGGGGCTGGAACTCGAACGCTGACGTTGGCTCCTGAGCCGGGCGCTGCCTCGCGCCTGATTGGCGGGTCCTCGGGGCCGCCCTCCC CAGCGCACCACCCCTGGGTTCCCTCCCGGGTCCGCAGTGGAAACACTGCCCTCTCCCTTCTTGACCCCTAGCCCTTCCTTCCCTCCCTCC TTCCCTCCTGTCGCCGTCTCTTCTGGCGCCGCTGCTCCCGGAGGAGCTCCCGGCACGGCGATGGGTTCTCGGGCCTCCACGTTACTGCGG GACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTTTCCCACAGTCAAATCACTCGCCTCTACAGCCGGTTCACCAGCCTGGACAAA GGAGAGAATGGGACTCTCAGCCGGGAAGATTTCCAGAGGATTCCAGAACTTGCCATCAACCCACTGGGGGACCGGATCATCAATGCCTTC TTTCCAGAGGGAGAGGACCAGGTAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGCCCCATTGAGGATAATGAAAAGAGCAAA GATGTGAATGGACCCGAACCACTCAACAGCCGAAGCAACAAACTGCACTTTGCTTTTCGACTATATGATTTGGATAAAGATGAAAAGATC TCCCGTGATGAGCTGTTACAGCTTCCCATTGACCGGGGTGGAGGTGAAGGAAAGGCCATGTACATTGACACTGAGGGTACCTTTAGGCCA GAACGGCTGCTGGCAGTGGCTGAGAGGTATGGTCTCTCTGGCAGTGATGTCCTGGATAATGTAGCATATGCTCGAGCGTTCAACACAGAC CACCAGACCCAGCTCCTTTATCAAGCATCAGCCATGATGGTAGAATCTAGGTATGCACTGCTTATTGTAGACAGTGCCACCGCCCTTTAC AGAACAGACTACTCGGGTCGAGGTGAGCTTTCAGCCAGGCAGATGCACTTGGCCAGGTTTCTGCGGATGCTTCTGCGACTCGCTGATGAG ATTGTATCTGAGGAAAGGAAGAGGGGAAACCAGAATCTGCAAAATCTACGACTCTCCCTGTCTTCCTGAAGCTGAAGCTATGTTCGCCAT TAATGCAGATGGAGTGGGAGATGCCAAAGACTGAATCATTGGGTTTTTCCTCTGTTAAAAACCTTAAGTGCTGCAGCCTAATGAGAGTGC ACTGCTCCCTGGGGTTCTCTACAGGCCTCTTCCTGTTGTGACTGCCAGGATAAAGCTTCCGGGAAAACAGCTATTATATCAGCTTTTCTG ATGGTATAAACAGGAGACAGGTCAGTAGTCACAAACTGATCTAAAATGTTTATTCCTTCTGTAGTGTATTAATCTCTGTGTGTTTTCTTT GGTTTTGGAGGAGGGGTATGAAGTATCTTTGACATGGTGCCTTAGGAATGACTTGGGTTTAACAAGCTGTCTACTGGACAATCTTATGTT >16610_16610_2_CHP1-RAD51_CHP1_chr15_41562816_ENST00000334660_RAD51_chr15_41011003_ENST00000423169_length(amino acids)=331AA_BP=26 MAGPRGRPPQRTTPGFPPGSAVETLPSPFLTPSPSFPPSFPPVAVSSGAAAPGGAPGTAMGSRASTLLRDEELEEIKKETGFSHSQITRL YSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRL YDLDKDEKISRDELLQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALL -------------------------------------------------------------- >16610_16610_3_CHP1-RAD51_CHP1_chr15_41562816_ENST00000560397_RAD51_chr15_41011003_ENST00000267868_length(transcript)=2064nt_BP=501nt TTGACCCCTAGCCCTTCCTTCCCTCCCTCCTTCCCTCCTGTCGCCGTCTCTTCTGGCGCCGCTGCTCCCGGAGGAGCTCCCGGCACGGCG ATGGGTTCTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTTTCCCACAGTCAAATCACTCGC CTCTACAGCCGGTTCACCAGCCTGGACAAAGGAGAGAATGGGACTCTCAGCCGGGAAGATTTCCAGAGGATTCCAGAACTTGCCATCAAC CCACTGGGGGACCGGATCATCAATGCCTTCTTTCCAGAGGGAGAGGACCAGGTAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTC CGCCCCATTGAGGATAATGAAAAGAGCAAAGATGTGAATGGACCCGAACCACTCAACAGCCGAAGCAACAAACTGCACTTTGCTTTTCGA CTATATGATTTGGATAAAGATGAAAAGATCTCCCGTGATGAGCTGTTACAGCTTCCCATTGACCGGGGTGGAGGTGAAGGAAAGGCCATG TACATTGACACTGAGGGTACCTTTAGGCCAGAACGGCTGCTGGCAGTGGCTGAGAGGTATGGTCTCTCTGGCAGTGATGTCCTGGATAAT GTAGCATATGCTCGAGCGTTCAACACAGACCACCAGACCCAGCTCCTTTATCAAGCATCAGCCATGATGGTAGAATCTAGGTATGCACTG CTTATTGTAGACAGTGCCACCGCCCTTTACAGAACAGACTACTCGGGTCGAGGTGAGCTTTCAGCCAGGCAGATGCACTTGGCCAGGTTT CTGCGGATGCTTCTGCGACTCGCTGATGAGTTTGGTGTAGCAGTGGTAATCACTAATCAGGTGGTAGCTCAAGTGGATGGAGCAGCGATG TTTGCTGCTGATCCCAAAAAACCTATTGGAGGAAATATCATCGCCCATGCATCAACAACCAGATTGTATCTGAGGAAAGGAAGAGGGGAA ACCAGAATCTGCAAAATCTACGACTCTCCCTGTCTTCCTGAAGCTGAAGCTATGTTCGCCATTAATGCAGATGGAGTGGGAGATGCCAAA GACTGAATCATTGGGTTTTTCCTCTGTTAAAAACCTTAAGTGCTGCAGCCTAATGAGAGTGCACTGCTCCCTGGGGTTCTCTACAGGCCT CTTCCTGTTGTGACTGCCAGGATAAAGCTTCCGGGAAAACAGCTATTATATCAGCTTTTCTGATGGTATAAACAGGAGACAGGTCAGTAG TCACAAACTGATCTAAAATGTTTATTCCTTCTGTAGTGTATTAATCTCTGTGTGTTTTCTTTGGTTTTGGAGGAGGGGTATGAAGTATCT TTGACATGGTGCCTTAGGAATGACTTGGGTTTAACAAGCTGTCTACTGGACAATCTTATGTTTCCAAGAGAACTAAAGCTGGAGAGACCT GACCCTTCTCTCACTTCTAAATTAATGGTAAAATAAAATGCCTCAGCTATGTAGCAAAGGGAATGGGTCTGCACAGATTCTTTTTTTCTG TCAGTAAAACTCTCAAGCAGGTTTTTAAGTTGTCTGTCTGAATGATCTTGTGTAAGGTTTTGGTTATGGAGTCTTGTGCCAAACCTACTA GGCCATTAGCCCTTCACCATCTACCTGCTTGGTCTTTCATTGCTAAGACTAACTCAAGATAATCCTAGAGTCTTAAAGCATTTCAGGCCA GTGTGGTGTCTTGCGCCTGTACTCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCGCTTGAGCCCAGGAGTTTTAAGTCCAGCTTGGCC AAGGTGGTGAAATCCCATCTCTACAAAAAATGCAGAACTTAATCTGGACACACTGTTACACGTGCCTGTAGTCCCAGCTACTCGATAGCC TGAGGTGGGAGAATCACTTAAGCCTGGAAGGTGGAAGTTGCAGTGAGTCGAGATTGCACTGCTGCATTCCAGCCAGGGTGACAGAGTGAG >16610_16610_3_CHP1-RAD51_CHP1_chr15_41562816_ENST00000560397_RAD51_chr15_41011003_ENST00000267868_length(amino acids)=361AA_BP=165 LTPSPSFPPSFPPVAVSSGAAAPGGAPGTAMGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQLPIDRGGGEGKAM YIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARF LRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAK -------------------------------------------------------------- >16610_16610_4_CHP1-RAD51_CHP1_chr15_41562816_ENST00000560397_RAD51_chr15_41011003_ENST00000423169_length(transcript)=1378nt_BP=501nt TTGACCCCTAGCCCTTCCTTCCCTCCCTCCTTCCCTCCTGTCGCCGTCTCTTCTGGCGCCGCTGCTCCCGGAGGAGCTCCCGGCACGGCG ATGGGTTCTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTTTCCCACAGTCAAATCACTCGC CTCTACAGCCGGTTCACCAGCCTGGACAAAGGAGAGAATGGGACTCTCAGCCGGGAAGATTTCCAGAGGATTCCAGAACTTGCCATCAAC CCACTGGGGGACCGGATCATCAATGCCTTCTTTCCAGAGGGAGAGGACCAGGTAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTC CGCCCCATTGAGGATAATGAAAAGAGCAAAGATGTGAATGGACCCGAACCACTCAACAGCCGAAGCAACAAACTGCACTTTGCTTTTCGA CTATATGATTTGGATAAAGATGAAAAGATCTCCCGTGATGAGCTGTTACAGCTTCCCATTGACCGGGGTGGAGGTGAAGGAAAGGCCATG TACATTGACACTGAGGGTACCTTTAGGCCAGAACGGCTGCTGGCAGTGGCTGAGAGGTATGGTCTCTCTGGCAGTGATGTCCTGGATAAT GTAGCATATGCTCGAGCGTTCAACACAGACCACCAGACCCAGCTCCTTTATCAAGCATCAGCCATGATGGTAGAATCTAGGTATGCACTG CTTATTGTAGACAGTGCCACCGCCCTTTACAGAACAGACTACTCGGGTCGAGGTGAGCTTTCAGCCAGGCAGATGCACTTGGCCAGGTTT CTGCGGATGCTTCTGCGACTCGCTGATGAGATTGTATCTGAGGAAAGGAAGAGGGGAAACCAGAATCTGCAAAATCTACGACTCTCCCTG TCTTCCTGAAGCTGAAGCTATGTTCGCCATTAATGCAGATGGAGTGGGAGATGCCAAAGACTGAATCATTGGGTTTTTCCTCTGTTAAAA ACCTTAAGTGCTGCAGCCTAATGAGAGTGCACTGCTCCCTGGGGTTCTCTACAGGCCTCTTCCTGTTGTGACTGCCAGGATAAAGCTTCC GGGAAAACAGCTATTATATCAGCTTTTCTGATGGTATAAACAGGAGACAGGTCAGTAGTCACAAACTGATCTAAAATGTTTATTCCTTCT GTAGTGTATTAATCTCTGTGTGTTTTCTTTGGTTTTGGAGGAGGGGTATGAAGTATCTTTGACATGGTGCCTTAGGAATGACTTGGGTTT AACAAGCTGTCTACTGGACAATCTTATGTTTCCAAGAGAACTAAAGCTGGAGAGACCTGACCCTTCTCTCACTTCTAAATTAATGGTAAA >16610_16610_4_CHP1-RAD51_CHP1_chr15_41562816_ENST00000560397_RAD51_chr15_41011003_ENST00000423169_length(amino acids)=302AA_BP=165 LTPSPSFPPSFPPVAVSSGAAAPGGAPGTAMGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQLPIDRGGGEGKAM YIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARF 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Fusion Gene PPI Analysis for CHP1-RAD51 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000267868 | 4 | 10 | 184_257 | 145.0 | 340.0 | PALB2 | |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000382643 | 4 | 10 | 184_257 | 146.0 | 341.0 | PALB2 | |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000423169 | 4 | 9 | 184_257 | 145.0 | 281.0 | PALB2 | |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000532743 | 4 | 10 | 184_257 | 146.0 | 341.0 | PALB2 | |
Tgene | RAD51 | chr15:41562816 | chr15:41011003 | ENST00000557850 | 0 | 8 | 184_257 | 0 | 243.0 | PALB2 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for CHP1-RAD51 |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for CHP1-RAD51 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | C0006142 | Malignant neoplasm of breast | 2 | CTD_human;UNIPROT | |
Tgene | C0015625 | Fanconi Anemia | 2 | GENOMICS_ENGLAND;ORPHANET | |
Tgene | C0677776 | Hereditary Breast and Ovarian Cancer Syndrome | 2 | ORPHANET | |
Tgene | C4284093 | FANCONI ANEMIA, COMPLEMENTATION GROUP R | 2 | CTD_human;UNIPROT | |
Tgene | C0018671 | Head and Neck Neoplasms | 1 | CTD_human | |
Tgene | C0018675 | Head Neoplasms | 1 | CTD_human | |
Tgene | C0023465 | Acute monocytic leukemia | 1 | GENOMICS_ENGLAND | |
Tgene | C0023467 | Leukemia, Myelocytic, Acute | 1 | GENOMICS_ENGLAND | |
Tgene | C0027533 | Neck Neoplasms | 1 | CTD_human | |
Tgene | C0265219 | Miller Dieker syndrome | 1 | GENOMICS_ENGLAND | |
Tgene | C0278996 | Malignant Head and Neck Neoplasm | 1 | CTD_human | |
Tgene | C0746787 | Cancer of Neck | 1 | CTD_human | |
Tgene | C0751177 | Cancer of Head | 1 | CTD_human | |
Tgene | C0887900 | Upper Aerodigestive Tract Neoplasms | 1 | CTD_human | |
Tgene | C1449861 | Micronuclei, Chromosome-Defective | 1 | CTD_human | |
Tgene | C1449862 | Micronuclei, Genotoxicant-Induced | 1 | CTD_human | |
Tgene | C3281089 | MIRROR MOVEMENTS 2 | 1 | CTD_human;GENOMICS_ENGLAND | |
Tgene | C3463824 | MYELODYSPLASTIC SYNDROME | 1 | GENOMICS_ENGLAND |