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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:AHSG-NUDC (FusionGDB2 ID:HG197TG10726)

Fusion Gene Summary for AHSG-NUDC

check button Fusion gene summary
Fusion gene informationFusion gene name: AHSG-NUDC
Fusion gene ID: hg197tg10726
HgeneTgene
Gene symbol

AHSG

NUDC

Gene ID

197

10726

Gene namealpha 2-HS glycoproteinnuclear distribution C, dynein complex regulator
SynonymsA2HS|AHS|APMR1|FETUA|HSGAHNUDC|MNUDC|NPD011
Cytomap('AHSG')('NUDC')

3q27.3

1p36.11

Type of geneprotein-codingprotein-coding
Descriptionalpha-2-HS-glycoproteinalpha-2-Z-globulinba-alpha-2-glycoproteinfetuin-Anuclear migration protein nudCnuclear distribution C homolognuclear distribution gene C homolognuclear distribution protein C homolognudC nuclear distribution protein
Modification date2020032920200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000273784, ENST00000411641, 
Fusion gene scores* DoF score13 X 6 X 4=31211 X 11 X 8=968
# samples 1415
** MAII scorelog2(14/312*10)=-1.15611920191728
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(15/968*10)=-2.69004454677871
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: AHSG [Title/Abstract] AND NUDC [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointAHSG(186336426)-NUDC(27271880), # samples:1
Anticipated loss of major functional domain due to fusion event.AHSG-NUDC seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
AHSG-NUDC seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
AHSG-NUDC seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
AHSG-NUDC seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneAHSG

GO:0006953

acute-phase response

12153747

HgeneAHSG

GO:0050766

positive regulation of phagocytosis

12725640


check buttonFusion gene breakpoints across AHSG (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure
check buttonFusion gene breakpoints across NUDC (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4Non-CancerTCGA-BC-A110-11AAHSGchr3

186336426

+NUDCchr1

27271880

+


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Fusion Gene ORF analysis for AHSG-NUDC

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000273784ENST00000484772AHSGchr3

186336426

+NUDCchr1

27271880

+
5CDS-3UTRENST00000411641ENST00000484772AHSGchr3

186336426

+NUDCchr1

27271880

+
In-frameENST00000273784ENST00000321265AHSGchr3

186336426

+NUDCchr1

27271880

+
In-frameENST00000411641ENST00000321265AHSGchr3

186336426

+NUDCchr1

27271880

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000411641AHSGchr3186336426+ENST00000321265NUDCchr127271880+1830894241148374
ENST00000273784AHSGchr3186336426+ENST00000321265NUDCchr127271880+1690754431008321

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000411641ENST00000321265AHSGchr3186336426+NUDCchr127271880+0.0011125960.99888736
ENST00000273784ENST00000321265AHSGchr3186336426+NUDCchr127271880+0.0009805010.9990195

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Fusion Genomic Features for AHSG-NUDC


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
AHSGchr3186336426+NUDCchr127271880+0.0024706810.9975293
AHSGchr3186336426+NUDCchr127271880+0.0024706810.9975293

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for AHSG-NUDC


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:186336426/chr1:27271880)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneAHSGchr3:186336426chr1:27271880ENST00000411641+5727_133225368.0DomainCystatin fetuin-A-type 1

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneAHSGchr3:186336426chr1:27271880ENST00000411641+57144_255225368.0DomainCystatin fetuin-A-type 2
TgeneNUDCchr3:186336426chr1:27271880ENST000003212655960_134247332.0Coiled coilOntology_term=ECO:0000255
TgeneNUDCchr3:186336426chr1:27271880ENST0000032126559167_258247332.0DomainCS
TgeneNUDCchr3:186336426chr1:27271880ENST000003212655968_74247332.0MotifNuclear localization signal


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Fusion Gene Sequence for AHSG-NUDC


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>3158_3158_1_AHSG-NUDC_AHSG_chr3_186336426_ENST00000273784_NUDC_chr1_27271880_ENST00000321265_length(transcript)=1690nt_BP=754nt
TTCCCAGCAGAGCACCTGGGTTGGTCCCGAAGCCTCCAACCACCTGCACGCCTGCCAGGGCCTCTCTGGGGCAGCCATGAAGTCCCTCGT
CCTGCTCCTTTGTCTTGCTCAGCTCTGGGGCTGCCACTCAGCCCCACATGGCCCAGGGCTGATTTATAGACAACCGAACTGCGATGATCC
AGAAACTGAGGAAGCAGCTCTGGTGGCTATAGACTACATCAATCAAAACCTTCCTTGGGGATACAAACACACCTTGAACCAGATTGATGA
AGTAAAGGTGTGGCCTCAGCAGCCCTCCGGAGAGCTGTTTGAGATTGAAATAGACACCCTGGAAACCACCTGCCATGTGCTGGACCCCAC
CCCTGTGGCAAGATGCAGCGTGAGGCAGCTGAAGGAGCATGCTGTCGAAGGAGACTGTGATTTCCAGCTGTTGAAACTAGATGGCAAGTT
TTCCGTGGTATACGCAAAATGTGATTCCAGTCCAGCAGACTCAGCCGAGGACGTGCGCAAGGTGTGCCAAGACTGCCCCCTGCTGGCCCC
GCTGAACGACACCAGGGTGGTGCACGCCGCGAAAGCTGCCCTGGCCGCCTTCAACGCTCAGAACAACGGCTCCAATTTTCAGCTGGAGGA
AATTTCCCGGGCTCAGCTTGTGCCCCTCCCACCTTCTACCTATGTGGAGTTTACAGTGTCTGGCACTGACTGTGTTGCTAAAGAGGCCAC
AGAGGCAGCCAAGTGTAACCTGCTGGCAGAAAAGATCAATAAGATGGAGTGGTGGAGCCGCTTGGTGTCCAGTGACCCTGAGATCAACAC
CAAGAAGATTAACCCTGAGAATTCCAAGCTGTCAGACCTGGACAGTGAGACTCGCAGCATGGTGGAAAAGATGATGTATGACCAGCGACA
GAAGTCCATGGGGCTGCCAACTTCAGACGAACAGAAGAAACAGGAGATTCTGAAGAAGTTCATGGATCAACATCCGGAGATGGATTTTTC
CAAGGCTAAATTCAACTAGCCCCTGTTTTTTCCTCCCTGAACTCTTGGGGCTGAGCTGCAACCACCCAACTTTCTTTCCCACTCTTCTCT
GGGACTTGTGGGCCTCAGGGCTTGGGGCAGGCATGGGACTGGCCCAGGCACACAGGTCCCGGGGCATCAGGAGAAAGGCTGGGTCTTGGG
ACCTTGTCCTCCCCAGTTGGCCTACTGTTACACATTAAAACGATTTGCCCAGCTCCTTCTGTGTCCTCTCTTGCCTCTGGCCTTTCTCTG
GGGCACAGGCCTCTTACGGCTGCTGCTGGGAACTGGGAGTTTGGCTTCTAGCCCAGATTCTGCCATGTGACCTAGGGCACATCCTTGCCC
CTCTCTGGGCCTCAGTTTCTCATTACTTAAAGATTAAAACAAGGCTTGGCCGGGTGTGATGGTTCATGTCTGTAATCCCAGCACTTTGGG
AGGCTGAGGGGAGCAGATCACCTGATGTCAGGAGTTTGAGACCAGCTTGGCCAACATGGAGAAACCCAGTCTCTACTAAAAATACAAAAA
TTAGCCGGGTGTGGTGGTGCACACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGTGGCGGAGGTTGC

>3158_3158_1_AHSG-NUDC_AHSG_chr3_186336426_ENST00000273784_NUDC_chr1_27271880_ENST00000321265_length(amino acids)=321AA_BP=237
MHACQGLSGAAMKSLVLLLCLAQLWGCHSAPHGPGLIYRQPNCDDPETEEAALVAIDYINQNLPWGYKHTLNQIDEVKVWPQQPSGELFE
IEIDTLETTCHVLDPTPVARCSVRQLKEHAVEGDCDFQLLKLDGKFSVVYAKCDSSPADSAEDVRKVCQDCPLLAPLNDTRVVHAAKAAL
AAFNAQNNGSNFQLEEISRAQLVPLPPSTYVEFTVSGTDCVAKEATEAAKCNLLAEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLD

--------------------------------------------------------------
>3158_3158_2_AHSG-NUDC_AHSG_chr3_186336426_ENST00000411641_NUDC_chr1_27271880_ENST00000321265_length(transcript)=1830nt_BP=894nt
TGTTTGCTTTTCCAGGGCTGATGTTTGCAGGGTGTTTTTTTTTTTCTTTTGAACCAAAGCAGAAATCATCCTGTATCCTTATGCAATTCT
TCCGGCAGGCTCCAACAGATAAATAAAGCCCACCACCCTCCATGGGTCTACCTTTCCCAGCAGAGCACCTGGGTTGGTCCCGAAGCCTCC
AACCACCTGCACGCCTGCCAGGGCCTCTCTGGGGCAGCCATGAAGTCCCTCGTCCTGCTCCTTTGTCTTGCTCAGCTCTGGGGCTGCCAC
TCAGCCCCACATGGCCCAGGGCTGATTTATAGACAACCGAACTGCGATGATCCAGAAACTGAGGAAGCAGCTCTGGTGGCTATAGACTAC
ATCAATCAAAACCTTCCTTGGGGATACAAACACACCTTGAACCAGATTGATGAAGTAAAGGTGTGGCCTCAGCAGCCCTCCGGAGAGCTG
TTTGAGATTGAAATAGACACCCTGGAAACCACCTGCCATGTGCTGGACCCCACCCCTGTGGCAAGATGCAGCGTGAGGCAGCTGAAGGAG
CATGCTGTCGAAGGAGACTGTGATTTCCAGCTGTTGAAACTAGATGGCAAGTTTTCCGTGGTATACGCAAAATGTGATTCCAGTCCAGAC
TCAGCCGAGGACGTGCGCAAGGTGTGCCAAGACTGCCCCCTGCTGGCCCCGCTGAACGACACCAGGGTGGTGCACGCCGCGAAAGCTGCC
CTGGCCGCCTTCAACGCTCAGAACAACGGCTCCAATTTTCAGCTGGAGGAAATTTCCCGGGCTCAGCTTGTGCCCCTCCCACCTTCTACC
TATGTGGAGTTTACAGTGTCTGGCACTGACTGTGTTGCTAAAGAGGCCACAGAGGCAGCCAAGTGTAACCTGCTGGCAGAAAAGATCAAT
AAGATGGAGTGGTGGAGCCGCTTGGTGTCCAGTGACCCTGAGATCAACACCAAGAAGATTAACCCTGAGAATTCCAAGCTGTCAGACCTG
GACAGTGAGACTCGCAGCATGGTGGAAAAGATGATGTATGACCAGCGACAGAAGTCCATGGGGCTGCCAACTTCAGACGAACAGAAGAAA
CAGGAGATTCTGAAGAAGTTCATGGATCAACATCCGGAGATGGATTTTTCCAAGGCTAAATTCAACTAGCCCCTGTTTTTTCCTCCCTGA
ACTCTTGGGGCTGAGCTGCAACCACCCAACTTTCTTTCCCACTCTTCTCTGGGACTTGTGGGCCTCAGGGCTTGGGGCAGGCATGGGACT
GGCCCAGGCACACAGGTCCCGGGGCATCAGGAGAAAGGCTGGGTCTTGGGACCTTGTCCTCCCCAGTTGGCCTACTGTTACACATTAAAA
CGATTTGCCCAGCTCCTTCTGTGTCCTCTCTTGCCTCTGGCCTTTCTCTGGGGCACAGGCCTCTTACGGCTGCTGCTGGGAACTGGGAGT
TTGGCTTCTAGCCCAGATTCTGCCATGTGACCTAGGGCACATCCTTGCCCCTCTCTGGGCCTCAGTTTCTCATTACTTAAAGATTAAAAC
AAGGCTTGGCCGGGTGTGATGGTTCATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGGGAGCAGATCACCTGATGTCAGGAGTTTGAG
ACCAGCTTGGCCAACATGGAGAAACCCAGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGTGCACACCTGTAATCCCAGCTAC
TCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGTGGCGGAGGTTGCAGTGAGCCGAGATTGCACTACTTCACTCCAGCATGGGTGA

>3158_3158_2_AHSG-NUDC_AHSG_chr3_186336426_ENST00000411641_NUDC_chr1_27271880_ENST00000321265_length(amino acids)=374AA_BP=290
MQGVFFFLLNQSRNHPVSLCNSSGRLQQINKAHHPPWVYLSQQSTWVGPEASNHLHACQGLSGAAMKSLVLLLCLAQLWGCHSAPHGPGL
IYRQPNCDDPETEEAALVAIDYINQNLPWGYKHTLNQIDEVKVWPQQPSGELFEIEIDTLETTCHVLDPTPVARCSVRQLKEHAVEGDCD
FQLLKLDGKFSVVYAKCDSSPDSAEDVRKVCQDCPLLAPLNDTRVVHAAKAALAAFNAQNNGSNFQLEEISRAQLVPLPPSTYVEFTVSG
TDCVAKEATEAAKCNLLAEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFM

--------------------------------------------------------------

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Fusion Gene PPI Analysis for AHSG-NUDC


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
TgeneNUDCchr3:186336426chr1:27271880ENST0000032126559173_331247.0332.0EML4


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for AHSG-NUDC


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for AHSG-NUDC


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneAHSGC0006663Calcinosis1CTD_human
HgeneAHSGC0013221Drug toxicity1CTD_human
HgeneAHSGC0022660Kidney Failure, Acute1CTD_human
HgeneAHSGC0041755Adverse reaction to drug1CTD_human
HgeneAHSGC0263628Tumoral calcinosis1CTD_human
HgeneAHSGC0521174Microcalcification1CTD_human
HgeneAHSGC1565662Acute Kidney Insufficiency1CTD_human
HgeneAHSGC1859878Alopecia-Mental Retardation Syndrome 11CTD_human;UNIPROT
HgeneAHSGC2609414Acute kidney injury1CTD_human
HgeneAHSGC2931280Perniola Krajewska Carnevale syndrome1ORPHANET