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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:ESR1-CCDC170 (FusionGDB2 ID:HG2099TG80129)

Fusion Gene Summary for ESR1-CCDC170

check button Fusion gene summary
Fusion gene informationFusion gene name: ESR1-CCDC170
Fusion gene ID: hg2099tg80129
HgeneTgene
Gene symbol

ESR1

CCDC170

Gene ID

2099

80129

Gene nameestrogen receptor 1coiled-coil domain containing 170
SynonymsER|ESR|ESRA|ESTRR|Era|NR3A1C6orf97|bA282P11.1
Cytomap('ESR1','ESR1')('C6orf97','CCDC170')

6q25.1-q25.2

6q25.1

Type of geneprotein-codingprotein-coding
Descriptionestrogen receptorE2 receptor alphaER-alphaestradiol receptorestrogen nuclear receptor alphaestrogen receptor alpha E1-E2-1-2estrogen receptor alpha E1-N2-E2-1-2nuclear receptor subfamily 3 group A member 1oestrogen receptor alphacoiled-coil domain-containing protein 170
Modification date2020032920200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000206249, ENST00000338799, 
ENST00000406599, ENST00000427531, 
ENST00000440973, ENST00000443427, 
ENST00000456483, ENST00000482101, 
Fusion gene scores* DoF score21 X 18 X 8=30247 X 13 X 7=637
# samples 3520
** MAII scorelog2(35/3024*10)=-3.11103131238874
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(20/637*10)=-1.67129337248158
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: ESR1 [Title/Abstract] AND CCDC170 [Title/Abstract] AND fusion [Title/Abstract]

Identification of differentially expressed genes and typical fusion genes associated with three subtypes of breast cancer (pmid: 30446971)
Therapeutic role of recurrent ESR1-CCDC170 gene fusions in breast cancer endocrine resistance (pmid: 32771039)
Most frequent breakpointESR1(152023140)-C6orf97(151857453), # samples:4
ESR1(152023140)-CCDC170(151857453), # samples:2
Anticipated loss of major functional domain due to fusion event.ESR1-CCDC170 seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF.
ESR1-CCDC170 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
ESR1-CCDC170 seems lost the major protein functional domain in Hgene partner, which is a transcription factor due to the frame-shifted ORF.
ESR1-CCDC170 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneESR1

GO:0006366

transcription by RNA polymerase II

15831516

HgeneESR1

GO:0010629

negative regulation of gene expression

21695196

HgeneESR1

GO:0030520

intracellular estrogen receptor signaling pathway

9841876

HgeneESR1

GO:0032355

response to estradiol

15304487

HgeneESR1

GO:0043124

negative regulation of I-kappaB kinase/NF-kappaB signaling

7651415|16043358

HgeneESR1

GO:0043433

negative regulation of DNA-binding transcription factor activity

10816575

HgeneESR1

GO:0043627

response to estrogen

11581164

HgeneESR1

GO:0045893

positive regulation of transcription, DNA-templated

9841876|20074560

HgeneESR1

GO:0045899

positive regulation of RNA polymerase II transcriptional preinitiation complex assembly

9841876

HgeneESR1

GO:0045944

positive regulation of transcription by RNA polymerase II

11544182|12047722|15345745|15831516|18563714

HgeneESR1

GO:0051091

positive regulation of DNA-binding transcription factor activity

9328340|10681512

HgeneESR1

GO:0071392

cellular response to estradiol stimulus

15831516



check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-A2-A0CT-01AESR1chr6

152023140

-C6orf97chr6

151857453

+
ChimerDB4BRCATCGA-A2-A0YG-01AESR1chr6

152023140

-C6orf97chr6

151859180

+
ChimerDB4BRCATCGA-A2-A25B-01AESR1chr6

152023140

-C6orf97chr6

151869439

+
ChimerDB4BRCATCGA-A2-A4S3-01AESR1chr6

152023140

-C6orf97chr6

151936578

+
ChimerDB4BRCATCGA-A7-A4SC-01AESR1chr6

152023140

-C6orf97chr6

151917470

+
ChimerDB4BRCATCGA-AC-A8OS-01AESR1chr6

152023140

-C6orf97chr6

151894309

+
ChimerDB4BRCATCGA-AR-A24R-01AESR1chr6

152129499

-C6orf97chr6

151857453

+
ChimerDB4BRCATCGA-BH-A0B1-01AESR1chr6

152023140

-C6orf97chr6

151865707

+
ChimerDB4BRCATCGA-BH-A0C0-01AESR1chr6

152023140

-C6orf97chr6

151907024

+
ChimerDB4BRCATCGA-BH-A0HY-01AESR1chr6

152023140

-C6orf97chr6

151857453

+
ChimerDB4BRCATCGA-BH-A18R-01AESR1chr6

152023140

-C6orf97chr6

151857453

+
ChimerDB4BRCATCGA-D8-A1JP-01AESR1chr6

152011799

-C6orf97chr6

151936578

+
ChimerDB4BRCATCGA-D8-A1XA-01AESR1chr6

152023140

-C6orf97chr6

151894309

+
ChimerDB4BRCATCGA-D8-A27N-01AESR1chr6

152201906

-C6orf97chr6

151857453

+
ChimerDB4UCECTCGA-AJ-A3EJ-01AESR1chr6

152023140

-C6orf97chr6

151917470

+
ChimerDB4UCECTCGA-AJ-A3EM-01AESR1chr6

152023140

-C6orf97chr6

151894309

+
ChimerDB4UCECTCGA-AP-A5FX-01AESR1chr6

152023140

-C6orf97chr6

151857453

+
ChimerDB4UCECTCGA-AX-A3FW-01AESR1chr6

152023140

-C6orf97chr6

151936578

+
ChimerDB4UCSTCGA-NG-A4VU-01AESR1chr6

152023140

-C6orf97chr6

151936578

+
ChimerDB4BRCATCGA-A1-A0SM-01AESR1chr6

152332929

+CCDC170chr6

151869439

+
ChimerDB4BRCATCGA-A2-A0CT-01AESR1chr6

152023140

+CCDC170chr6

151857453

+
ChimerDB4BRCATCGA-A2-A0YG-01AESR1chr6

152023140

+CCDC170chr6

151859180

+
ChimerDB4BRCATCGA-A2-A4S3-01AESR1chr6

152023140

+CCDC170chr6

151936578

+
ChimerDB4BRCATCGA-A2-A4S3-01AESR1chr6

152064277

+CCDC170chr6

151930152

+
ChimerDB4BRCATCGA-A7-A4SC-01AESR1chr6

152023140

+CCDC170chr6

151917470

+
ChimerDB4BRCATCGA-AC-A8OS-01AESR1chr6

152023140

+CCDC170chr6

151894309

+
ChimerDB4BRCATCGA-AR-A24R-01AESR1chr6

152129499

+CCDC170chr6

151857453

+
ChimerDB4BRCATCGA-AR-A24R-01AESR1chr6

152129499

+CCDC170chr6

151859180

+
ChimerDB4BRCATCGA-BH-A18R-01AESR1chr6

152023140

+CCDC170chr6

151857453

+
ChimerDB4BRCATCGA-BH-A1FD-01AESR1chr6

151977898

+CCDC170chr6

151907024

+
ChimerDB4BRCATCGA-BH-A1FD-01AESR1chr6

152163922

+CCDC170chr6

151936578

+
ChimerDB4BRCATCGA-D8-A1JP-01AESR1chr6

152011799

+CCDC170chr6

151936578

+
ChimerDB4BRCATCGA-D8-A27N-01AESR1chr6

152201906

+CCDC170chr6

151857453

+
ChimerDB4OVTCGA-24-1469-01AESR1chr6

152332929

+CCDC170chr6

151907024

+
ChimerDB4OVTCGA-24-1469-01AESR1chr6

152382259

+CCDC170chr6

151859180

+
ChimerDB4OVTCGA-24-1469-01AESR1chr6

152382259

+CCDC170chr6

151914242

+
ChimerDB4UCECTCGA-EY-A4KR-01AESR1chr6

152163922

+CCDC170chr6

151894309

+
ChimerKB4..ESR1chr6

152332790

+CCDC170chr6

152332790

+


Top

Fusion Gene ORF analysis for ESR1-CCDC170

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000206249ENST00000544131ESR1chr6

152129499

+CCDC170chr6

151857453

+
5CDS-3UTRENST00000206249ENST00000544131ESR1chr6

152129499

+CCDC170chr6

151859180

+
5CDS-3UTRENST00000206249ENST00000544131ESR1chr6

152201906

+CCDC170chr6

151857453

+
5CDS-3UTRENST00000206249ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151859180

+
5CDS-3UTRENST00000338799ENST00000544131ESR1chr6

152129499

+CCDC170chr6

151857453

+
5CDS-3UTRENST00000338799ENST00000544131ESR1chr6

152129499

+CCDC170chr6

151859180

+
5CDS-3UTRENST00000338799ENST00000544131ESR1chr6

152201906

+CCDC170chr6

151857453

+
5CDS-3UTRENST00000338799ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151859180

+
5CDS-3UTRENST00000406599ENST00000544131ESR1chr6

152129499

+CCDC170chr6

151857453

+
5CDS-3UTRENST00000406599ENST00000544131ESR1chr6

152129499

+CCDC170chr6

151859180

+
5CDS-3UTRENST00000406599ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151859180

+
5CDS-3UTRENST00000427531ENST00000544131ESR1chr6

152201906

+CCDC170chr6

151857453

+
5CDS-3UTRENST00000427531ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151859180

+
5CDS-3UTRENST00000440973ENST00000544131ESR1chr6

152129499

+CCDC170chr6

151857453

+
5CDS-3UTRENST00000440973ENST00000544131ESR1chr6

152129499

+CCDC170chr6

151859180

+
5CDS-3UTRENST00000440973ENST00000544131ESR1chr6

152201906

+CCDC170chr6

151857453

+
5CDS-3UTRENST00000440973ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151859180

+
5CDS-3UTRENST00000443427ENST00000544131ESR1chr6

152129499

+CCDC170chr6

151857453

+
5CDS-3UTRENST00000443427ENST00000544131ESR1chr6

152129499

+CCDC170chr6

151859180

+
5CDS-3UTRENST00000443427ENST00000544131ESR1chr6

152201906

+CCDC170chr6

151857453

+
5CDS-3UTRENST00000443427ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151859180

+
5CDS-3UTRENST00000456483ENST00000544131ESR1chr6

152129499

+CCDC170chr6

151857453

+
5CDS-3UTRENST00000456483ENST00000544131ESR1chr6

152129499

+CCDC170chr6

151859180

+
5CDS-3UTRENST00000456483ENST00000544131ESR1chr6

152201906

+CCDC170chr6

151857453

+
5CDS-3UTRENST00000456483ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151859180

+
5CDS-intronENST00000206249ENST00000544131ESR1chr6

152332929

+CCDC170chr6

151869439

+
5CDS-intronENST00000206249ENST00000544131ESR1chr6

152163922

+CCDC170chr6

151936578

+
5CDS-intronENST00000206249ENST00000544131ESR1chr6

152332929

+CCDC170chr6

151907024

+
5CDS-intronENST00000206249ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151914242

+
5CDS-intronENST00000206249ENST00000544131ESR1chr6

152163922

+CCDC170chr6

151894309

+
5CDS-intronENST00000338799ENST00000544131ESR1chr6

152332929

+CCDC170chr6

151869439

+
5CDS-intronENST00000338799ENST00000544131ESR1chr6

152163922

+CCDC170chr6

151936578

+
5CDS-intronENST00000338799ENST00000544131ESR1chr6

152332929

+CCDC170chr6

151907024

+
5CDS-intronENST00000338799ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151914242

+
5CDS-intronENST00000338799ENST00000544131ESR1chr6

152163922

+CCDC170chr6

151894309

+
5CDS-intronENST00000406599ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151914242

+
5CDS-intronENST00000427531ENST00000544131ESR1chr6

152332929

+CCDC170chr6

151869439

+
5CDS-intronENST00000427531ENST00000544131ESR1chr6

152163922

+CCDC170chr6

151936578

+
5CDS-intronENST00000427531ENST00000544131ESR1chr6

152332929

+CCDC170chr6

151907024

+
5CDS-intronENST00000427531ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151914242

+
5CDS-intronENST00000427531ENST00000544131ESR1chr6

152163922

+CCDC170chr6

151894309

+
5CDS-intronENST00000440973ENST00000544131ESR1chr6

152332929

+CCDC170chr6

151869439

+
5CDS-intronENST00000440973ENST00000544131ESR1chr6

152163922

+CCDC170chr6

151936578

+
5CDS-intronENST00000440973ENST00000544131ESR1chr6

152332929

+CCDC170chr6

151907024

+
5CDS-intronENST00000440973ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151914242

+
5CDS-intronENST00000440973ENST00000544131ESR1chr6

152163922

+CCDC170chr6

151894309

+
5CDS-intronENST00000443427ENST00000544131ESR1chr6

152332929

+CCDC170chr6

151869439

+
5CDS-intronENST00000443427ENST00000544131ESR1chr6

152163922

+CCDC170chr6

151936578

+
5CDS-intronENST00000443427ENST00000544131ESR1chr6

152332929

+CCDC170chr6

151907024

+
5CDS-intronENST00000443427ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151914242

+
5CDS-intronENST00000443427ENST00000544131ESR1chr6

152163922

+CCDC170chr6

151894309

+
5CDS-intronENST00000456483ENST00000544131ESR1chr6

152332929

+CCDC170chr6

151869439

+
5CDS-intronENST00000456483ENST00000544131ESR1chr6

152163922

+CCDC170chr6

151936578

+
5CDS-intronENST00000456483ENST00000544131ESR1chr6

152332929

+CCDC170chr6

151907024

+
5CDS-intronENST00000456483ENST00000544131ESR1chr6

152382259

+CCDC170chr6

151914242

+
5CDS-intronENST00000456483ENST00000544131ESR1chr6

152163922

+CCDC170chr6

151894309

+
5UTR-3CDSENST00000440973ENST00000239374ESR1chr6

152023140

+CCDC170chr6

151857453

+
5UTR-3CDSENST00000440973ENST00000239374ESR1chr6

152023140

+CCDC170chr6

151859180

+
5UTR-3CDSENST00000440973ENST00000239374ESR1chr6

152023140

+CCDC170chr6

151936578

+
5UTR-3CDSENST00000440973ENST00000239374ESR1chr6

152023140

+CCDC170chr6

151917470

+
5UTR-3CDSENST00000440973ENST00000239374ESR1chr6

152023140

+CCDC170chr6

151894309

+
5UTR-3CDSENST00000440973ENST00000239374ESR1chr6

152011799

+CCDC170chr6

151936578

+
5UTR-3CDSENST00000440973ENST00000367290ESR1chr6

152023140

+CCDC170chr6

151857453

+
5UTR-3CDSENST00000440973ENST00000367290ESR1chr6

152023140

+CCDC170chr6

151859180

+
5UTR-3CDSENST00000440973ENST00000367290ESR1chr6

152023140

+CCDC170chr6

151936578

+
5UTR-3CDSENST00000440973ENST00000367290ESR1chr6

152023140

+CCDC170chr6

151917470

+
5UTR-3CDSENST00000440973ENST00000367290ESR1chr6

152023140

+CCDC170chr6

151894309

+
5UTR-3CDSENST00000440973ENST00000367290ESR1chr6

152011799

+CCDC170chr6

151936578

+
5UTR-3UTRENST00000440973ENST00000544131ESR1chr6

152023140

+CCDC170chr6

151857453

+
5UTR-3UTRENST00000440973ENST00000544131ESR1chr6

152023140

+CCDC170chr6

151859180

+
5UTR-intronENST00000440973ENST00000544131ESR1chr6

152023140

+CCDC170chr6

151936578

+
5UTR-intronENST00000440973ENST00000544131ESR1chr6

152023140

+CCDC170chr6

151917470

+
5UTR-intronENST00000440973ENST00000544131ESR1chr6

152023140

+CCDC170chr6

151894309

+
5UTR-intronENST00000440973ENST00000544131ESR1chr6

152011799

+CCDC170chr6

151936578

+
Frame-shiftENST00000206249ENST00000239374ESR1chr6

152332929

+CCDC170chr6

151869439

+
Frame-shiftENST00000206249ENST00000239374ESR1chr6

152129499

+CCDC170chr6

151857453

+
Frame-shiftENST00000206249ENST00000239374ESR1chr6

152129499

+CCDC170chr6

151859180

+
Frame-shiftENST00000206249ENST00000239374ESR1chr6

152163922

+CCDC170chr6

151936578

+
Frame-shiftENST00000206249ENST00000239374ESR1chr6

152201906

+CCDC170chr6

151857453

+
Frame-shiftENST00000206249ENST00000239374ESR1chr6

152332929

+CCDC170chr6

151907024

+
Frame-shiftENST00000206249ENST00000239374ESR1chr6

152382259

+CCDC170chr6

151859180

+
Frame-shiftENST00000206249ENST00000239374ESR1chr6

152382259

+CCDC170chr6

151914242

+
Frame-shiftENST00000206249ENST00000239374ESR1chr6

152163922

+CCDC170chr6

151894309

+
Frame-shiftENST00000206249ENST00000367290ESR1chr6

152332929

+CCDC170chr6

151869439

+
Frame-shiftENST00000206249ENST00000367290ESR1chr6

152129499

+CCDC170chr6

151857453

+
Frame-shiftENST00000206249ENST00000367290ESR1chr6

152129499

+CCDC170chr6

151859180

+
Frame-shiftENST00000206249ENST00000367290ESR1chr6

152163922

+CCDC170chr6

151936578

+
Frame-shiftENST00000206249ENST00000367290ESR1chr6

152201906

+CCDC170chr6

151857453

+
Frame-shiftENST00000206249ENST00000367290ESR1chr6

152332929

+CCDC170chr6

151907024

+
Frame-shiftENST00000206249ENST00000367290ESR1chr6

152382259

+CCDC170chr6

151859180

+
Frame-shiftENST00000206249ENST00000367290ESR1chr6

152382259

+CCDC170chr6

151914242

+
Frame-shiftENST00000206249ENST00000367290ESR1chr6

152163922

+CCDC170chr6

151894309

+
Frame-shiftENST00000338799ENST00000239374ESR1chr6

152332929

+CCDC170chr6

151869439

+
Frame-shiftENST00000338799ENST00000239374ESR1chr6

152129499

+CCDC170chr6

151857453

+
Frame-shiftENST00000338799ENST00000239374ESR1chr6

152129499

+CCDC170chr6

151859180

+
Frame-shiftENST00000338799ENST00000239374ESR1chr6

152163922

+CCDC170chr6

151936578

+
Frame-shiftENST00000338799ENST00000239374ESR1chr6

152201906

+CCDC170chr6

151857453

+
Frame-shiftENST00000338799ENST00000239374ESR1chr6

152332929

+CCDC170chr6

151907024

+
Frame-shiftENST00000338799ENST00000239374ESR1chr6

152382259

+CCDC170chr6

151859180

+
Frame-shiftENST00000338799ENST00000239374ESR1chr6

152382259

+CCDC170chr6

151914242

+
Frame-shiftENST00000338799ENST00000239374ESR1chr6

152163922

+CCDC170chr6

151894309

+
Frame-shiftENST00000338799ENST00000367290ESR1chr6

152332929

+CCDC170chr6

151869439

+
Frame-shiftENST00000338799ENST00000367290ESR1chr6

152129499

+CCDC170chr6

151857453

+
Frame-shiftENST00000338799ENST00000367290ESR1chr6

152129499

+CCDC170chr6

151859180

+
Frame-shiftENST00000338799ENST00000367290ESR1chr6

152163922

+CCDC170chr6

151936578

+
Frame-shiftENST00000338799ENST00000367290ESR1chr6

152201906

+CCDC170chr6

151857453

+
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check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

Top

Fusion Genomic Features for ESR1-CCDC170


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
ESR1chr6152332929+CCDC170chr6151869438+0.0092086560.9907913
ESR1chr6152023140+CCDC170chr6151857452+0.0023489970.99765104
ESR1chr6152023140+CCDC170chr6151894308+0.0017479370.9982521
ESR1chr6152023140+CCDC170chr6151859179+0.0010345150.9989655
ESR1chr6152023140+CCDC170chr6151936577+0.0005507870.9994492
ESR1chr6152011799+CCDC170chr6151936577+0.0001773930.9998227
ESR1chr6152382259+CCDC170chr6151859179+2.61E-050.9999739
ESR1chr6152023140+CCDC170chr6151917469+2.44E-050.99997556
ESR1chr6152201906+CCDC170chr6151857452+3.66E-060.9999963
ESR1chr6152382259+CCDC170chr6151914241+2.59E-060.9999974
ESR1chr6152163922+CCDC170chr6151894308+2.47E-060.9999975
ESR1chr6152332929+CCDC170chr6151907023+1.37E-060.9999987
ESR1chr6152163922+CCDC170chr6151936577+4.92E-070.9999995
ESR1chr6152129499+CCDC170chr6151857452+1.41E-081
ESR1chr6152129499+CCDC170chr6151859179+4.61E-091
ESR1chr6152332929+CCDC170chr6151869438+0.0092086560.9907913
ESR1chr6152023140+CCDC170chr6151857452+0.0023489970.99765104
ESR1chr6152023140+CCDC170chr6151894308+0.0017479370.9982521
ESR1chr6152023140+CCDC170chr6151859179+0.0010345150.9989655
ESR1chr6152023140+CCDC170chr6151936577+0.0005507870.9994492
ESR1chr6152011799+CCDC170chr6151936577+0.0001773930.9998227
ESR1chr6152382259+CCDC170chr6151859179+2.61E-050.9999739
ESR1chr6152023140+CCDC170chr6151917469+2.44E-050.99997556
ESR1chr6152201906+CCDC170chr6151857452+3.66E-060.9999963
ESR1chr6152382259+CCDC170chr6151914241+2.59E-060.9999974
ESR1chr6152163922+CCDC170chr6151894308+2.47E-060.9999975
ESR1chr6152332929+CCDC170chr6151907023+1.37E-060.9999987
ESR1chr6152163922+CCDC170chr6151936577+4.92E-070.9999995
ESR1chr6152129499+CCDC170chr6151857452+1.41E-081
ESR1chr6152129499+CCDC170chr6151859179+4.61E-091


check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

Top

Fusion Protein Features for ESR1-CCDC170


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:152023140/:151857453)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for ESR1-CCDC170


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for ESR1-CCDC170


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for ESR1-CCDC170


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for ESR1-CCDC170


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneESR1C0006142Malignant neoplasm of breast14CGI;CTD_human;GENOMICS_ENGLAND;UNIPROT
HgeneESR1C0678222Breast Carcinoma14CGI;CTD_human
HgeneESR1C1257931Mammary Neoplasms, Human14CTD_human
HgeneESR1C1458155Mammary Neoplasms14CTD_human
HgeneESR1C4704874Mammary Carcinoma, Human14CTD_human
HgeneESR1C0005586Bipolar Disorder5PSYGENET
HgeneESR1C0011570Mental Depression5PSYGENET
HgeneESR1C0011581Depressive disorder5PSYGENET
HgeneESR1C0036341Schizophrenia5PSYGENET
HgeneESR1C0525045Mood Disorders4PSYGENET
HgeneESR1C3809250ESTROGEN RESISTANCE3GENOMICS_ENGLAND;ORPHANET;UNIPROT
HgeneESR1C0001418Adenocarcinoma2CTD_human
HgeneESR1C0007097Carcinoma2CTD_human
HgeneESR1C0007621Neoplastic Cell Transformation2CTD_human
HgeneESR1C0010054Coronary Arteriosclerosis2CTD_human
HgeneESR1C0021364Male infertility2CTD_human
HgeneESR1C0024121Lung Neoplasms2CTD_human
HgeneESR1C0024667Animal Mammary Neoplasms2CTD_human
HgeneESR1C0025500Mesothelioma2CTD_human
HgeneESR1C0027626Neoplasm Invasiveness2CTD_human
HgeneESR1C0033578Prostatic Neoplasms2CTD_human
HgeneESR1C0205641Adenocarcinoma, Basal Cell2CTD_human
HgeneESR1C0205642Adenocarcinoma, Oxyphilic2CTD_human
HgeneESR1C0205643Carcinoma, Cribriform2CTD_human
HgeneESR1C0205644Carcinoma, Granular Cell2CTD_human
HgeneESR1C0205645Adenocarcinoma, Tubular2CTD_human
HgeneESR1C0205696Anaplastic carcinoma2CTD_human
HgeneESR1C0205697Carcinoma, Spindle-Cell2CTD_human
HgeneESR1C0205698Undifferentiated carcinoma2CTD_human
HgeneESR1C0205699Carcinomatosis2CTD_human
HgeneESR1C0242379Malignant neoplasm of lung2CTD_human
HgeneESR1C0376358Malignant neoplasm of prostate2CTD_human
HgeneESR1C0848676Subfertility, Male2CTD_human
HgeneESR1C0917731Male sterility2CTD_human
HgeneESR1C1257925Mammary Carcinoma, Animal2CTD_human
HgeneESR1C1956346Coronary Artery Disease2CTD_human
HgeneESR1C2239176Liver carcinoma2CTD_human
HgeneESR1C0002395Alzheimer's Disease1CTD_human
HgeneESR1C0004114Astrocytoma1CTD_human
HgeneESR1C0004153Atherosclerosis1CTD_human
HgeneESR1C0005684Malignant neoplasm of urinary bladder1CTD_human
HgeneESR1C0005695Bladder Neoplasm1CTD_human
HgeneESR1C0005940Bone Diseases1CTD_human
HgeneESR1C0005944Metabolic Bone Disorder1CTD_human
HgeneESR1C0007852Cervical Migraine Syndrome1CTD_human
HgeneESR1C0011265Presenile dementia1CTD_human
HgeneESR1C0014170Endometrial Neoplasms1CTD_human
HgeneESR1C0017658Glomerulonephritis1CTD_human
HgeneESR1C0018984Hemicrania migraine1CTD_human
HgeneESR1C0021361Female infertility1CTD_human
HgeneESR1C0023267Fibroid Tumor1CTD_human
HgeneESR1C0023418leukemia1CTD_human
HgeneESR1C0023903Liver neoplasms1CTD_human
HgeneESR1C0024668Mammary Neoplasms, Experimental1CTD_human
HgeneESR1C0024809Marijuana Abuse1PSYGENET
HgeneESR1C0026858Musculoskeletal Pain1CTD_human
HgeneESR1C0027051Myocardial Infarction1CTD_human
HgeneESR1C0027627Neoplasm Metastasis1CTD_human
HgeneESR1C0027643Neoplasm Recurrence, Local1CTD_human
HgeneESR1C0027819Neuroblastoma1CTD_human
HgeneESR1C0028754Obesity1CTD_human
HgeneESR1C0028960Oligospermia1CTD_human
HgeneESR1C0029453Osteopenia1CTD_human
HgeneESR1C0033937Psychoses, Drug1CTD_human
HgeneESR1C0033941Psychoses, Substance-Induced1CTD_human
HgeneESR1C0036939Shared Paranoid Disorder1PSYGENET
HgeneESR1C0038279Sterility, Postpartum1CTD_human
HgeneESR1C0042133Uterine Fibroids1CTD_human
HgeneESR1C0149931Migraine Disorders1CTD_human
HgeneESR1C0205768Subependymal Giant Cell Astrocytoma1CTD_human
HgeneESR1C0235874Disease Exacerbation1CTD_human
HgeneESR1C0270858Abdominal Migraine1CTD_human
HgeneESR1C0276496Familial Alzheimer Disease (FAD)1CTD_human
HgeneESR1C0280783Juvenile Pilocytic Astrocytoma1CTD_human
HgeneESR1C0280785Diffuse Astrocytoma1CTD_human
HgeneESR1C0282612Prostatic Intraepithelial Neoplasias1CTD_human
HgeneESR1C0334579Anaplastic astrocytoma1CTD_human
HgeneESR1C0334580Protoplasmic astrocytoma1CTD_human
HgeneESR1C0334581Gemistocytic astrocytoma1CTD_human
HgeneESR1C0334582Fibrillary Astrocytoma1CTD_human
HgeneESR1C0334583Pilocytic Astrocytoma1CTD_human
HgeneESR1C0338070Childhood Cerebral Astrocytoma1CTD_human
HgeneESR1C0338489Status Migrainosus1CTD_human
HgeneESR1C0341869Subfertility, Female1CTD_human
HgeneESR1C0345904Malignant neoplasm of liver1CTD_human
HgeneESR1C0476089Endometrial Carcinoma1CGI;CTD_human
HgeneESR1C0494463Alzheimer Disease, Late Onset1CTD_human
HgeneESR1C0521664Acute Confusional Migraine1CTD_human
HgeneESR1C0546126Acute Confusional Senile Dementia1CTD_human
HgeneESR1C0547065Mixed oligoastrocytoma1CTD_human
HgeneESR1C0700438Sick Headaches1CTD_human
HgeneESR1C0750900Alzheimer's Disease, Focal Onset1CTD_human
HgeneESR1C0750901Alzheimer Disease, Early Onset1CTD_human
HgeneESR1C0750935Cerebral Astrocytoma1CTD_human
HgeneESR1C0750936Intracranial Astrocytoma1CTD_human
HgeneESR1C0917730Female sterility1CTD_human
HgeneESR1C1563937Atherogenesis1CTD_human
HgeneESR1C1704230Grade I Astrocytoma1CTD_human
HgeneESR1C1704377Bright Disease1CTD_human
HgeneESR1C1720887Female Urogenital Diseases1CTD_human
HgeneESR1C1800706Idiopathic Pulmonary Fibrosis1CTD_human
HgeneESR1C4721508Hamman-Rich Disease1CTD_human
HgeneESR1C4721509Usual Interstitial Pneumonia1CTD_human
HgeneESR1C4721952Familial Idiopathic Pulmonary Fibrosis1CTD_human