![]() |
||||||
|
![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:ALCAM-PARN (FusionGDB2 ID:HG214TG5073) |
Fusion Gene Summary for ALCAM-PARN |
![]() |
Fusion gene information | Fusion gene name: ALCAM-PARN | Fusion gene ID: hg214tg5073 | Hgene | Tgene | Gene symbol | ALCAM | PARN | Gene ID | 214 | 5073 |
Gene name | activated leukocyte cell adhesion molecule | poly(A)-specific ribonuclease | |
Synonyms | CD166|MEMD | DAN|DKCB6|PFBMFT4 | |
Cytomap | ('ALCAM')('PARN') 3q13.11 | 16p13.12 | |
Type of gene | protein-coding | protein-coding | |
Description | CD166 antigen | poly(A)-specific ribonuclease PARNdeadenylating nucleasedeadenylation nucleasepolyadenylate-specific ribonuclease | |
Modification date | 20200320 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000306107, ENST00000472644, ENST00000389927, ENST00000481337, ENST00000486979, | ||
Fusion gene scores | * DoF score | 15 X 13 X 6=1170 | 9 X 8 X 4=288 |
# samples | 17 | 9 | |
** MAII score | log2(17/1170*10)=-2.78290187833307 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/288*10)=-1.67807190511264 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ALCAM [Title/Abstract] AND PARN [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ALCAM(105086325)-PARN(14576684), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | ALCAM-PARN seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ALCAM-PARN seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PARN | GO:0000495 | box H/ACA snoRNA 3'-end processing | 22442037 |
Tgene | PARN | GO:0010587 | miRNA catabolic process | 25049417 |
Tgene | PARN | GO:0071051 | polyadenylation-dependent snoRNA 3'-end processing | 22442037 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
![]() |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
![]() |
![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-CD-A4MI | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
ChimerDB4 | UCEC | TCGA-B5-A11N | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
Top |
Fusion Gene ORF analysis for ALCAM-PARN |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000306107 | ENST00000566021 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
5CDS-intron | ENST00000472644 | ENST00000566021 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
In-frame | ENST00000306107 | ENST00000341484 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
In-frame | ENST00000306107 | ENST00000420015 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
In-frame | ENST00000306107 | ENST00000437198 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
In-frame | ENST00000306107 | ENST00000539279 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
In-frame | ENST00000472644 | ENST00000341484 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
In-frame | ENST00000472644 | ENST00000420015 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
In-frame | ENST00000472644 | ENST00000437198 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
In-frame | ENST00000472644 | ENST00000539279 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-3CDS | ENST00000389927 | ENST00000341484 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-3CDS | ENST00000389927 | ENST00000420015 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-3CDS | ENST00000389927 | ENST00000437198 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-3CDS | ENST00000389927 | ENST00000539279 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-3CDS | ENST00000481337 | ENST00000341484 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-3CDS | ENST00000481337 | ENST00000420015 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-3CDS | ENST00000481337 | ENST00000437198 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-3CDS | ENST00000481337 | ENST00000539279 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-3CDS | ENST00000486979 | ENST00000341484 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-3CDS | ENST00000486979 | ENST00000420015 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-3CDS | ENST00000486979 | ENST00000437198 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-3CDS | ENST00000486979 | ENST00000539279 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-intron | ENST00000389927 | ENST00000566021 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-intron | ENST00000481337 | ENST00000566021 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
intron-intron | ENST00000486979 | ENST00000566021 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - |
![]() |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000306107 | ALCAM | chr3 | 105086325 | + | ENST00000437198 | PARN | chr16 | 14576684 | - | 2029 | 573 | 392 | 1012 | 206 |
ENST00000306107 | ALCAM | chr3 | 105086325 | + | ENST00000420015 | PARN | chr16 | 14576684 | - | 1457 | 573 | 392 | 1012 | 206 |
ENST00000306107 | ALCAM | chr3 | 105086325 | + | ENST00000341484 | PARN | chr16 | 14576684 | - | 1125 | 573 | 392 | 1012 | 206 |
ENST00000306107 | ALCAM | chr3 | 105086325 | + | ENST00000539279 | PARN | chr16 | 14576684 | - | 1062 | 573 | 392 | 1012 | 206 |
ENST00000472644 | ALCAM | chr3 | 105086325 | + | ENST00000437198 | PARN | chr16 | 14576684 | - | 1595 | 139 | 66 | 578 | 170 |
ENST00000472644 | ALCAM | chr3 | 105086325 | + | ENST00000420015 | PARN | chr16 | 14576684 | - | 1023 | 139 | 66 | 578 | 170 |
ENST00000472644 | ALCAM | chr3 | 105086325 | + | ENST00000341484 | PARN | chr16 | 14576684 | - | 691 | 139 | 66 | 578 | 170 |
ENST00000472644 | ALCAM | chr3 | 105086325 | + | ENST00000539279 | PARN | chr16 | 14576684 | - | 628 | 139 | 66 | 578 | 170 |
![]() |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000306107 | ENST00000437198 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - | 0.007057557 | 0.99294245 |
ENST00000306107 | ENST00000420015 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - | 0.009631019 | 0.990369 |
ENST00000306107 | ENST00000341484 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - | 0.014333971 | 0.985666 |
ENST00000306107 | ENST00000539279 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - | 0.015223854 | 0.98477614 |
ENST00000472644 | ENST00000437198 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - | 0.004212467 | 0.99578756 |
ENST00000472644 | ENST00000420015 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - | 0.008627999 | 0.991372 |
ENST00000472644 | ENST00000341484 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - | 0.011654555 | 0.9883455 |
ENST00000472644 | ENST00000539279 | ALCAM | chr3 | 105086325 | + | PARN | chr16 | 14576684 | - | 0.012841049 | 0.9871589 |
Top |
Fusion Genomic Features for ALCAM-PARN |
![]() |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
![]() |
![]() |
Top |
Fusion Protein Features for ALCAM-PARN |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:105086325/chr16:14576684) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
![]() |
![]() |
Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000306107 | + | 1 | 16 | 125_234 | 24 | 1201.0 | Domain | Note=Ig-like V-type 2 |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000306107 | + | 1 | 16 | 245_328 | 24 | 1201.0 | Domain | Note=Ig-like C2-type 1 |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000306107 | + | 1 | 16 | 28_120 | 24 | 1201.0 | Domain | Note=Ig-like V-type 1 |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000306107 | + | 1 | 16 | 333_409 | 24 | 1201.0 | Domain | Note=Ig-like C2-type 2 |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000306107 | + | 1 | 16 | 416_501 | 24 | 1201.0 | Domain | Note=Ig-like C2-type 3 |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000472644 | + | 1 | 15 | 125_234 | 24 | 1319.6666666666667 | Domain | Note=Ig-like V-type 2 |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000472644 | + | 1 | 15 | 245_328 | 24 | 1319.6666666666667 | Domain | Note=Ig-like C2-type 1 |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000472644 | + | 1 | 15 | 28_120 | 24 | 1319.6666666666667 | Domain | Note=Ig-like V-type 1 |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000472644 | + | 1 | 15 | 333_409 | 24 | 1319.6666666666667 | Domain | Note=Ig-like C2-type 2 |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000472644 | + | 1 | 15 | 416_501 | 24 | 1319.6666666666667 | Domain | Note=Ig-like C2-type 3 |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000306107 | + | 1 | 16 | 28_527 | 24 | 1201.0 | Topological domain | Extracellular |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000306107 | + | 1 | 16 | 550_583 | 24 | 1201.0 | Topological domain | Cytoplasmic |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000472644 | + | 1 | 15 | 28_527 | 24 | 1319.6666666666667 | Topological domain | Extracellular |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000472644 | + | 1 | 15 | 550_583 | 24 | 1319.6666666666667 | Topological domain | Cytoplasmic |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000306107 | + | 1 | 16 | 528_549 | 24 | 1201.0 | Transmembrane | Helical |
Hgene | ALCAM | chr3:105086325 | chr16:14576684 | ENST00000472644 | + | 1 | 15 | 528_549 | 24 | 1319.6666666666667 | Transmembrane | Helical |
Tgene | PARN | chr3:105086325 | chr16:14576684 | ENST00000341484 | 20 | 24 | 178_245 | 432 | 579.0 | Domain | R3H | |
Tgene | PARN | chr3:105086325 | chr16:14576684 | ENST00000420015 | 19 | 23 | 178_245 | 447 | 594.0 | Domain | R3H | |
Tgene | PARN | chr3:105086325 | chr16:14576684 | ENST00000437198 | 20 | 24 | 178_245 | 493 | 640.0 | Domain | R3H |
Top |
Fusion Gene Sequence for ALCAM-PARN |
![]() |
>3818_3818_1_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000306107_PARN_chr16_14576684_ENST00000341484_length(transcript)=1125nt_BP=573nt AGAGCAGCCCGGAGACCGCTGCCGCCGCTGCCGCTGCTACCACCGCTGCCACCTGAGGAGACCCGCCGCCCCCCCGTCGCCGCCTCCTGC GAGTCCTTCTTAGCACCTGGCGTTTCATGCACATTGCCACTGCCATTATTATTATCATTCCAATACAAGGAAAATAAAAGAAGATACCAG CGAAAAGAACCGCTTACACCTTTCCGAATTACTCAAGTGTCTCCTGGAAACAGAGGGTCGTTGTCCCCGGAGGAGCAGCCGAAGGGCCCG TGGGCTGGTGTTGACCGGGAGGGAGGAGGAGTTGGGGGCATTGCGTGGTGGAAAGTTGCGTGCGGCAGAGAACCGAAGGTGCAGCGCCAC AGCCCAGGGGACGGTGTGTCTGGGAGAAGACGCTGCCCCTGCGTCGGGACCCGCCAGCGCGCGGGCACCGCGGGGCCCGGGACGACGCCC CCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCT GCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGCTGTCAATACCAGCAAATATGCAGAAAGCTATCGGATCCAAACCTATGCTGAATATA TGGGGAGAAAACAGGAAGAGAAGCAGATCAAAAGAAAGTGGACTGAAGATAGCTGGAAGGAGGCTGACAGCAAACGGTTAAACCCCCAGT GCATACCCTACACCCTGCAGAATCACTATTACCGCAACAATAGTTTTACAGCTCCCAGCACAGTAGGAAAGAGAAATTTGAGTCCTAGTC AAGAGGAAGCTGGCCTGGAGGACGGAGTGTCAGGGGAGATTTCCGACACTGAGCTTGAGCAGACCGATTCCTGTGCAGAGCCCCTCTCAG AGGGAAGGAAAAAGGCCAAGAAATTAAAAAGAATGAAGAAGGAGCTTTCTCCAGCAGGAAGCATCTCGAAGAACAGCCCTGCCACACTCT TTGAAGTTCCTGACACATGGTAACCAAGACCTGAGGGCAGCAAACCGCTGGTGCTGTCGCTGTGAGCAAGAGCCGGCTGGCACATTTGGA AGCCGCACTGTATTTAACTTAATCAAATGTGGTATGGGAGGGGTT >3818_3818_1_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000306107_PARN_chr16_14576684_ENST00000341484_length(amino acids)=206AA_BP=60 MPLRRDPPARGHRGARDDAPSCGVDSVSGPPRRRRNMESKGASSCRLLFCLLISATVFRPAVNTSKYAESYRIQTYAEYMGRKQEEKQIK RKWTEDSWKEADSKRLNPQCIPYTLQNHYYRNNSFTAPSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKR MKKELSPAGSISKNSPATLFEVPDTW -------------------------------------------------------------- >3818_3818_2_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000306107_PARN_chr16_14576684_ENST00000420015_length(transcript)=1457nt_BP=573nt AGAGCAGCCCGGAGACCGCTGCCGCCGCTGCCGCTGCTACCACCGCTGCCACCTGAGGAGACCCGCCGCCCCCCCGTCGCCGCCTCCTGC GAGTCCTTCTTAGCACCTGGCGTTTCATGCACATTGCCACTGCCATTATTATTATCATTCCAATACAAGGAAAATAAAAGAAGATACCAG CGAAAAGAACCGCTTACACCTTTCCGAATTACTCAAGTGTCTCCTGGAAACAGAGGGTCGTTGTCCCCGGAGGAGCAGCCGAAGGGCCCG TGGGCTGGTGTTGACCGGGAGGGAGGAGGAGTTGGGGGCATTGCGTGGTGGAAAGTTGCGTGCGGCAGAGAACCGAAGGTGCAGCGCCAC AGCCCAGGGGACGGTGTGTCTGGGAGAAGACGCTGCCCCTGCGTCGGGACCCGCCAGCGCGCGGGCACCGCGGGGCCCGGGACGACGCCC CCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCT GCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGCTGTCAATACCAGCAAATATGCAGAAAGCTATCGGATCCAAACCTATGCTGAATATA TGGGGAGAAAACAGGAAGAGAAGCAGATCAAAAGAAAGTGGACTGAAGATAGCTGGAAGGAGGCTGACAGCAAACGGTTAAACCCCCAGT GCATACCCTACACCCTGCAGAATCACTATTACCGCAACAATAGTTTTACAGCTCCCAGCACAGTAGGAAAGAGAAATTTGAGTCCTAGTC AAGAGGAAGCTGGCCTGGAGGACGGAGTGTCAGGGGAGATTTCCGACACTGAGCTTGAGCAGACCGATTCCTGTGCAGAGCCCCTCTCAG AGGGAAGGAAAAAGGCCAAGAAATTAAAAAGAATGAAGAAGGAGCTTTCTCCAGCAGGAAGCATCTCGAAGAACAGCCCTGCCACACTCT TTGAAGTTCCTGACACATGGTAACCAAGACCTGAGGGCAGCAAACCGCTGGTGCTGTCGCTGTGAGCAAGAGCCGGCTGGCACATTTGGA AGCCGCACTGTATTTAACTTAATCAAATGTGGTATGGGAGGGGTTGGAAACCAAGTTGTCTCCTGGGGGGGAGAAAACAGGTTTTATTTT TGTGGCTGTGGTTTTTTCCCCTTTTTAATCTAACTGCCTGTTGACATTGACACTCATCACGGTTGTAGGCTGTCATGAATGTGTACGTGC TTAACCAGTGAATTCCGTGTTGCTCTTGTGAGGCCTTTCCTGTCATGACCCAGTGTGCTTAAGAACCTGCCTGATGGGGAGTGTCGGCTG TGAAATCTGCAAAAAGAGCTGACATTCCAGCTGCTGTGATCATGAATTTGGGGGTGTACTGTCCTGCCTGTGCATCTTCTCGCACTGAGA TTTTGAGGCAGTTGCAG >3818_3818_2_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000306107_PARN_chr16_14576684_ENST00000420015_length(amino acids)=206AA_BP=60 MPLRRDPPARGHRGARDDAPSCGVDSVSGPPRRRRNMESKGASSCRLLFCLLISATVFRPAVNTSKYAESYRIQTYAEYMGRKQEEKQIK RKWTEDSWKEADSKRLNPQCIPYTLQNHYYRNNSFTAPSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKR MKKELSPAGSISKNSPATLFEVPDTW -------------------------------------------------------------- >3818_3818_3_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000306107_PARN_chr16_14576684_ENST00000437198_length(transcript)=2029nt_BP=573nt AGAGCAGCCCGGAGACCGCTGCCGCCGCTGCCGCTGCTACCACCGCTGCCACCTGAGGAGACCCGCCGCCCCCCCGTCGCCGCCTCCTGC GAGTCCTTCTTAGCACCTGGCGTTTCATGCACATTGCCACTGCCATTATTATTATCATTCCAATACAAGGAAAATAAAAGAAGATACCAG CGAAAAGAACCGCTTACACCTTTCCGAATTACTCAAGTGTCTCCTGGAAACAGAGGGTCGTTGTCCCCGGAGGAGCAGCCGAAGGGCCCG TGGGCTGGTGTTGACCGGGAGGGAGGAGGAGTTGGGGGCATTGCGTGGTGGAAAGTTGCGTGCGGCAGAGAACCGAAGGTGCAGCGCCAC AGCCCAGGGGACGGTGTGTCTGGGAGAAGACGCTGCCCCTGCGTCGGGACCCGCCAGCGCGCGGGCACCGCGGGGCCCGGGACGACGCCC CCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCT GCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGCTGTCAATACCAGCAAATATGCAGAAAGCTATCGGATCCAAACCTATGCTGAATATA TGGGGAGAAAACAGGAAGAGAAGCAGATCAAAAGAAAGTGGACTGAAGATAGCTGGAAGGAGGCTGACAGCAAACGGTTAAACCCCCAGT GCATACCCTACACCCTGCAGAATCACTATTACCGCAACAATAGTTTTACAGCTCCCAGCACAGTAGGAAAGAGAAATTTGAGTCCTAGTC AAGAGGAAGCTGGCCTGGAGGACGGAGTGTCAGGGGAGATTTCCGACACTGAGCTTGAGCAGACCGATTCCTGTGCAGAGCCCCTCTCAG AGGGAAGGAAAAAGGCCAAGAAATTAAAAAGAATGAAGAAGGAGCTTTCTCCAGCAGGAAGCATCTCGAAGAACAGCCCTGCCACACTCT TTGAAGTTCCTGACACATGGTAACCAAGACCTGAGGGCAGCAAACCGCTGGTGCTGTCGCTGTGAGCAAGAGCCGGCTGGCACATTTGGA AGCCGCACTGTATTTAACTTAATCAAATGTGGTATGGGAGGGGTTGGAAACCAAGTTGTCTCCTGGGGGGGAGAAAACAGGTTTTATTTT TGTGGCTGTGGTTTTTTCCCCTTTTTAATCTAACTGCCTGTTGACATTGACACTCATCACGGTTGTAGGCTGTCATGAATGTGTACGTGC TTAACCAGTGAATTCCGTGTTGCTCTTGTGAGGCCTTTCCTGTCATGACCCAGTGTGCTTAAGAACCTGCCTGATGGGGAGTGTCGGCTG TGAAATCTGCAAAAAGAGCTGACATTCCAGCTGCTGTGATCATGAATTTGGGGGTGTACTGTCCTGCCTGTGCATCTTCTCGCACTGAGA TTTTGAGGCAGTTGCAGCCCTCGGTTAGTCTCCCAGTGGAAAAATCGGTTGTGCCTCCCTGCTTCCCACCATAGCTGCCTGAAAACATGA CGCTCTCAAGCTTGTCCTTCCTTCAGGAAGATGTCCACTCATGCCCACCCATGAGAGGGCTTGCCGTATGCCCTGGCCTTTGGGCATATT TATGTAGAGTTCCTTTCTCCTAAGACGTGAGTTTCTCATGGGGGATGTACGAGTAAAAAGGTTAACTTCTGTTCTTATGCGTGGCGCTGT GTTCACTTTCCAGAGTCTCTGTTCGTTTGTTTGGATGGCGGTCTCGGGGTACGGCAGCGTGTGTGCGTACGTGTCTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATCGTGCAAATCTACAACATGTCCCAGCCCATTCTCCGTTGAAACAGATCACAGC AACGACAAACGCTCATGGCGCTGCTTTGCTCCACCCGCTTCAGATAGATCATTGTTAGATATTTCACATTTTTGTATGGTGGAAATAAAA ATGAAAAATGTATTTCCAAAAGATGAAAATTAAAAACATTTTCATAGGA >3818_3818_3_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000306107_PARN_chr16_14576684_ENST00000437198_length(amino acids)=206AA_BP=60 MPLRRDPPARGHRGARDDAPSCGVDSVSGPPRRRRNMESKGASSCRLLFCLLISATVFRPAVNTSKYAESYRIQTYAEYMGRKQEEKQIK RKWTEDSWKEADSKRLNPQCIPYTLQNHYYRNNSFTAPSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKR MKKELSPAGSISKNSPATLFEVPDTW -------------------------------------------------------------- >3818_3818_4_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000306107_PARN_chr16_14576684_ENST00000539279_length(transcript)=1062nt_BP=573nt AGAGCAGCCCGGAGACCGCTGCCGCCGCTGCCGCTGCTACCACCGCTGCCACCTGAGGAGACCCGCCGCCCCCCCGTCGCCGCCTCCTGC GAGTCCTTCTTAGCACCTGGCGTTTCATGCACATTGCCACTGCCATTATTATTATCATTCCAATACAAGGAAAATAAAAGAAGATACCAG CGAAAAGAACCGCTTACACCTTTCCGAATTACTCAAGTGTCTCCTGGAAACAGAGGGTCGTTGTCCCCGGAGGAGCAGCCGAAGGGCCCG TGGGCTGGTGTTGACCGGGAGGGAGGAGGAGTTGGGGGCATTGCGTGGTGGAAAGTTGCGTGCGGCAGAGAACCGAAGGTGCAGCGCCAC AGCCCAGGGGACGGTGTGTCTGGGAGAAGACGCTGCCCCTGCGTCGGGACCCGCCAGCGCGCGGGCACCGCGGGGCCCGGGACGACGCCC CCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCT GCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGCTGTCAATACCAGCAAATATGCAGAAAGCTATCGGATCCAAACCTATGCTGAATATA TGGGGAGAAAACAGGAAGAGAAGCAGATCAAAAGAAAGTGGACTGAAGATAGCTGGAAGGAGGCTGACAGCAAACGGTTAAACCCCCAGT GCATACCCTACACCCTGCAGAATCACTATTACCGCAACAATAGTTTTACAGCTCCCAGCACAGTAGGAAAGAGAAATTTGAGTCCTAGTC AAGAGGAAGCTGGCCTGGAGGACGGAGTGTCAGGGGAGATTTCCGACACTGAGCTTGAGCAGACCGATTCCTGTGCAGAGCCCCTCTCAG AGGGAAGGAAAAAGGCCAAGAAATTAAAAAGAATGAAGAAGGAGCTTTCTCCAGCAGGAAGCATCTCGAAGAACAGCCCTGCCACACTCT TTGAAGTTCCTGACACATGGTAACCAAGACCTGAGGGCAGCAAACCGCTGGTGCTGTCGCTGTGAGCAAGAG >3818_3818_4_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000306107_PARN_chr16_14576684_ENST00000539279_length(amino acids)=206AA_BP=60 MPLRRDPPARGHRGARDDAPSCGVDSVSGPPRRRRNMESKGASSCRLLFCLLISATVFRPAVNTSKYAESYRIQTYAEYMGRKQEEKQIK RKWTEDSWKEADSKRLNPQCIPYTLQNHYYRNNSFTAPSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKR MKKELSPAGSISKNSPATLFEVPDTW -------------------------------------------------------------- >3818_3818_5_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000472644_PARN_chr16_14576684_ENST00000341484_length(transcript)=691nt_BP=139nt GCCCGGGACGACGCCCCCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCC TGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGCTGTCAATACCAGCAAATATGCAGAAAGCTATCGGATCCAA ACCTATGCTGAATATATGGGGAGAAAACAGGAAGAGAAGCAGATCAAAAGAAAGTGGACTGAAGATAGCTGGAAGGAGGCTGACAGCAAA CGGTTAAACCCCCAGTGCATACCCTACACCCTGCAGAATCACTATTACCGCAACAATAGTTTTACAGCTCCCAGCACAGTAGGAAAGAGA AATTTGAGTCCTAGTCAAGAGGAAGCTGGCCTGGAGGACGGAGTGTCAGGGGAGATTTCCGACACTGAGCTTGAGCAGACCGATTCCTGT GCAGAGCCCCTCTCAGAGGGAAGGAAAAAGGCCAAGAAATTAAAAAGAATGAAGAAGGAGCTTTCTCCAGCAGGAAGCATCTCGAAGAAC AGCCCTGCCACACTCTTTGAAGTTCCTGACACATGGTAACCAAGACCTGAGGGCAGCAAACCGCTGGTGCTGTCGCTGTGAGCAAGAGCC GGCTGGCACATTTGGAAGCCGCACTGTATTTAACTTAATCAAATGTGGTATGGGAGGGGTT >3818_3818_5_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000472644_PARN_chr16_14576684_ENST00000341484_length(amino acids)=170AA_BP=24 MESKGASSCRLLFCLLISATVFRPAVNTSKYAESYRIQTYAEYMGRKQEEKQIKRKWTEDSWKEADSKRLNPQCIPYTLQNHYYRNNSFT APSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKRMKKELSPAGSISKNSPATLFEVPDTW -------------------------------------------------------------- >3818_3818_6_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000472644_PARN_chr16_14576684_ENST00000420015_length(transcript)=1023nt_BP=139nt GCCCGGGACGACGCCCCCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCC TGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGCTGTCAATACCAGCAAATATGCAGAAAGCTATCGGATCCAA ACCTATGCTGAATATATGGGGAGAAAACAGGAAGAGAAGCAGATCAAAAGAAAGTGGACTGAAGATAGCTGGAAGGAGGCTGACAGCAAA CGGTTAAACCCCCAGTGCATACCCTACACCCTGCAGAATCACTATTACCGCAACAATAGTTTTACAGCTCCCAGCACAGTAGGAAAGAGA AATTTGAGTCCTAGTCAAGAGGAAGCTGGCCTGGAGGACGGAGTGTCAGGGGAGATTTCCGACACTGAGCTTGAGCAGACCGATTCCTGT GCAGAGCCCCTCTCAGAGGGAAGGAAAAAGGCCAAGAAATTAAAAAGAATGAAGAAGGAGCTTTCTCCAGCAGGAAGCATCTCGAAGAAC AGCCCTGCCACACTCTTTGAAGTTCCTGACACATGGTAACCAAGACCTGAGGGCAGCAAACCGCTGGTGCTGTCGCTGTGAGCAAGAGCC GGCTGGCACATTTGGAAGCCGCACTGTATTTAACTTAATCAAATGTGGTATGGGAGGGGTTGGAAACCAAGTTGTCTCCTGGGGGGGAGA AAACAGGTTTTATTTTTGTGGCTGTGGTTTTTTCCCCTTTTTAATCTAACTGCCTGTTGACATTGACACTCATCACGGTTGTAGGCTGTC ATGAATGTGTACGTGCTTAACCAGTGAATTCCGTGTTGCTCTTGTGAGGCCTTTCCTGTCATGACCCAGTGTGCTTAAGAACCTGCCTGA TGGGGAGTGTCGGCTGTGAAATCTGCAAAAAGAGCTGACATTCCAGCTGCTGTGATCATGAATTTGGGGGTGTACTGTCCTGCCTGTGCA TCTTCTCGCACTGAGATTTTGAGGCAGTTGCAG >3818_3818_6_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000472644_PARN_chr16_14576684_ENST00000420015_length(amino acids)=170AA_BP=24 MESKGASSCRLLFCLLISATVFRPAVNTSKYAESYRIQTYAEYMGRKQEEKQIKRKWTEDSWKEADSKRLNPQCIPYTLQNHYYRNNSFT APSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKRMKKELSPAGSISKNSPATLFEVPDTW -------------------------------------------------------------- >3818_3818_7_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000472644_PARN_chr16_14576684_ENST00000437198_length(transcript)=1595nt_BP=139nt GCCCGGGACGACGCCCCCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCC TGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGCTGTCAATACCAGCAAATATGCAGAAAGCTATCGGATCCAA ACCTATGCTGAATATATGGGGAGAAAACAGGAAGAGAAGCAGATCAAAAGAAAGTGGACTGAAGATAGCTGGAAGGAGGCTGACAGCAAA CGGTTAAACCCCCAGTGCATACCCTACACCCTGCAGAATCACTATTACCGCAACAATAGTTTTACAGCTCCCAGCACAGTAGGAAAGAGA AATTTGAGTCCTAGTCAAGAGGAAGCTGGCCTGGAGGACGGAGTGTCAGGGGAGATTTCCGACACTGAGCTTGAGCAGACCGATTCCTGT GCAGAGCCCCTCTCAGAGGGAAGGAAAAAGGCCAAGAAATTAAAAAGAATGAAGAAGGAGCTTTCTCCAGCAGGAAGCATCTCGAAGAAC AGCCCTGCCACACTCTTTGAAGTTCCTGACACATGGTAACCAAGACCTGAGGGCAGCAAACCGCTGGTGCTGTCGCTGTGAGCAAGAGCC GGCTGGCACATTTGGAAGCCGCACTGTATTTAACTTAATCAAATGTGGTATGGGAGGGGTTGGAAACCAAGTTGTCTCCTGGGGGGGAGA AAACAGGTTTTATTTTTGTGGCTGTGGTTTTTTCCCCTTTTTAATCTAACTGCCTGTTGACATTGACACTCATCACGGTTGTAGGCTGTC ATGAATGTGTACGTGCTTAACCAGTGAATTCCGTGTTGCTCTTGTGAGGCCTTTCCTGTCATGACCCAGTGTGCTTAAGAACCTGCCTGA TGGGGAGTGTCGGCTGTGAAATCTGCAAAAAGAGCTGACATTCCAGCTGCTGTGATCATGAATTTGGGGGTGTACTGTCCTGCCTGTGCA TCTTCTCGCACTGAGATTTTGAGGCAGTTGCAGCCCTCGGTTAGTCTCCCAGTGGAAAAATCGGTTGTGCCTCCCTGCTTCCCACCATAG CTGCCTGAAAACATGACGCTCTCAAGCTTGTCCTTCCTTCAGGAAGATGTCCACTCATGCCCACCCATGAGAGGGCTTGCCGTATGCCCT GGCCTTTGGGCATATTTATGTAGAGTTCCTTTCTCCTAAGACGTGAGTTTCTCATGGGGGATGTACGAGTAAAAAGGTTAACTTCTGTTC TTATGCGTGGCGCTGTGTTCACTTTCCAGAGTCTCTGTTCGTTTGTTTGGATGGCGGTCTCGGGGTACGGCAGCGTGTGTGCGTACGTGT CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATCGTGCAAATCTACAACATGTCCCAGCCCATTCTCCGT TGAAACAGATCACAGCAACGACAAACGCTCATGGCGCTGCTTTGCTCCACCCGCTTCAGATAGATCATTGTTAGATATTTCACATTTTTG TATGGTGGAAATAAAAATGAAAAATGTATTTCCAAAAGATGAAAATTAAAAACATTTTCATAGGA >3818_3818_7_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000472644_PARN_chr16_14576684_ENST00000437198_length(amino acids)=170AA_BP=24 MESKGASSCRLLFCLLISATVFRPAVNTSKYAESYRIQTYAEYMGRKQEEKQIKRKWTEDSWKEADSKRLNPQCIPYTLQNHYYRNNSFT APSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKRMKKELSPAGSISKNSPATLFEVPDTW -------------------------------------------------------------- >3818_3818_8_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000472644_PARN_chr16_14576684_ENST00000539279_length(transcript)=628nt_BP=139nt GCCCGGGACGACGCCCCCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCC TGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGCTGTCAATACCAGCAAATATGCAGAAAGCTATCGGATCCAA ACCTATGCTGAATATATGGGGAGAAAACAGGAAGAGAAGCAGATCAAAAGAAAGTGGACTGAAGATAGCTGGAAGGAGGCTGACAGCAAA CGGTTAAACCCCCAGTGCATACCCTACACCCTGCAGAATCACTATTACCGCAACAATAGTTTTACAGCTCCCAGCACAGTAGGAAAGAGA AATTTGAGTCCTAGTCAAGAGGAAGCTGGCCTGGAGGACGGAGTGTCAGGGGAGATTTCCGACACTGAGCTTGAGCAGACCGATTCCTGT GCAGAGCCCCTCTCAGAGGGAAGGAAAAAGGCCAAGAAATTAAAAAGAATGAAGAAGGAGCTTTCTCCAGCAGGAAGCATCTCGAAGAAC AGCCCTGCCACACTCTTTGAAGTTCCTGACACATGGTAACCAAGACCTGAGGGCAGCAAACCGCTGGTGCTGTCGCTGTGAGCAAGAG >3818_3818_8_ALCAM-PARN_ALCAM_chr3_105086325_ENST00000472644_PARN_chr16_14576684_ENST00000539279_length(amino acids)=170AA_BP=24 MESKGASSCRLLFCLLISATVFRPAVNTSKYAESYRIQTYAEYMGRKQEEKQIKRKWTEDSWKEADSKRLNPQCIPYTLQNHYYRNNSFT APSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKRMKKELSPAGSISKNSPATLFEVPDTW -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for ALCAM-PARN |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for ALCAM-PARN |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for ALCAM-PARN |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ALCAM | C0007097 | Carcinoma | 1 | CTD_human |
Hgene | ALCAM | C0024667 | Animal Mammary Neoplasms | 1 | CTD_human |
Hgene | ALCAM | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |
Hgene | ALCAM | C0205696 | Anaplastic carcinoma | 1 | CTD_human |
Hgene | ALCAM | C0205697 | Carcinoma, Spindle-Cell | 1 | CTD_human |
Hgene | ALCAM | C0205698 | Undifferentiated carcinoma | 1 | CTD_human |
Hgene | ALCAM | C0205699 | Carcinomatosis | 1 | CTD_human |
Hgene | ALCAM | C1257925 | Mammary Carcinoma, Animal | 1 | CTD_human |
Tgene | C4225347 | PULMONARY FIBROSIS AND/OR BONE MARROW FAILURE, TELOMERE-RELATED, 4 | 4 | CTD_human;GENOMICS_ENGLAND;UNIPROT | |
Tgene | C4225356 | DYSKERATOSIS CONGENITA, AUTOSOMAL RECESSIVE 6 | 3 | CTD_human;GENOMICS_ENGLAND;UNIPROT | |
Tgene | C0265965 | Dyskeratosis Congenita | 2 | GENOMICS_ENGLAND;ORPHANET | |
Tgene | C0085786 | Hamman-Rich syndrome | 1 | ORPHANET | |
Tgene | C1800706 | Idiopathic Pulmonary Fibrosis | 1 | CTD_human;ORPHANET | |
Tgene | C1846142 | HOYERAAL-HREIDARSSON SYNDROME | 1 | ORPHANET | |
Tgene | C4721508 | Hamman-Rich Disease | 1 | CTD_human | |
Tgene | C4721509 | Usual Interstitial Pneumonia | 1 | CTD_human | |
Tgene | C4721952 | Familial Idiopathic Pulmonary Fibrosis | 1 | CTD_human |