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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:CACYBP-RABGAP1L (FusionGDB2 ID:HG27101TG9910)

Fusion Gene Summary for CACYBP-RABGAP1L

check button Fusion gene summary
Fusion gene informationFusion gene name: CACYBP-RABGAP1L
Fusion gene ID: hg27101tg9910
HgeneTgene
Gene symbol

CACYBP

RABGAP1L

Gene ID

27101

9910

Gene namecalcyclin binding proteinRAB GTPase activating protein 1 like
SynonymsGIG5|PNAS-107|S100A6BP|SIPHHL|TBC1D18
Cytomap('CACYBP')('RABGAP1L')

1q25.1

1q25.1

Type of geneprotein-codingprotein-coding
Descriptioncalcyclin-binding proteinS100A6-binding proteinSiah-interacting protein (SIP)growth-inhibiting gene 5 proteinhCacyBPrab GTPase-activating protein 1-likeTBC1 domain family, member 18expressed in hematopoietic cells, heart, liver (HLL)
Modification date2020032720200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000367679, ENST00000367681, 
ENST00000405362, ENST00000406752, 
ENST00000367679, ENST00000367681, 
ENST00000405362, ENST00000406752, 
Fusion gene scores* DoF score2 X 3 X 4=2416 X 16 X 10=2560
# samples 419
** MAII scorelog2(4/24*10)=0.736965594166206
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(19/2560*10)=-3.75207248655641
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CACYBP [Title/Abstract] AND RABGAP1L [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCACYBP(174976333)-RABGAP1L(174957777), # samples:1
CACYBP(174976333)-RABGAP1L(174958985), # samples:1
CACYBP(174969331)-RABGAP1L(174926594), # samples:1
CACYBP(174969331)-RABGAP1L(174938414), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneRABGAP1L

GO:0032880

regulation of protein localization

16923123



check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4CHOLTCGA-W5-AA2W-01ACACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
ChimerDB4LUSCTCGA-77-7337CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
ChimerDB4STADTCGA-VQ-A8PCCACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
ChimerDB4STADTCGA-VQ-A8PCCACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+


Top

Fusion Gene ORF analysis for CACYBP-RABGAP1L

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000367679ENST00000347255CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000367679ENST00000347255CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-3UTRENST00000367679ENST00000347255CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-3UTRENST00000367679ENST00000347255CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-3UTRENST00000367679ENST00000367686CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000367679ENST00000367686CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-3UTRENST00000367679ENST00000367686CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-3UTRENST00000367679ENST00000367686CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-3UTRENST00000367679ENST00000367687CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000367679ENST00000367687CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-3UTRENST00000367679ENST00000367687CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-3UTRENST00000367679ENST00000367687CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-3UTRENST00000367679ENST00000392064CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000367679ENST00000478442CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000367679ENST00000486220CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000367679ENST00000489615CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000367679ENST00000489615CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-3UTRENST00000367679ENST00000489615CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-3UTRENST00000367679ENST00000489615CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-3UTRENST00000367681ENST00000347255CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-3UTRENST00000367681ENST00000347255CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-3UTRENST00000367681ENST00000367686CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-3UTRENST00000367681ENST00000367686CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-3UTRENST00000367681ENST00000367687CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-3UTRENST00000367681ENST00000367687CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-3UTRENST00000367681ENST00000489615CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-3UTRENST00000367681ENST00000489615CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-3UTRENST00000405362ENST00000347255CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-3UTRENST00000405362ENST00000347255CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-3UTRENST00000405362ENST00000367686CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-3UTRENST00000405362ENST00000367686CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-3UTRENST00000405362ENST00000367687CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-3UTRENST00000405362ENST00000367687CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-3UTRENST00000405362ENST00000489615CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-3UTRENST00000405362ENST00000489615CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-3UTRENST00000406752ENST00000347255CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000406752ENST00000347255CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-3UTRENST00000406752ENST00000367686CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000406752ENST00000367686CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-3UTRENST00000406752ENST00000367687CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000406752ENST00000367687CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-3UTRENST00000406752ENST00000392064CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000406752ENST00000478442CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000406752ENST00000486220CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000406752ENST00000489615CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-3UTRENST00000406752ENST00000489615CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000367679ENST00000251507CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-intronENST00000367679ENST00000251507CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000367679ENST00000251507CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367679ENST00000251507CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367679ENST00000325589CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-intronENST00000367679ENST00000325589CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000367679ENST00000325589CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367679ENST00000325589CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367679ENST00000357444CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-intronENST00000367679ENST00000357444CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000367679ENST00000357444CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367679ENST00000357444CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367679ENST00000367688CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-intronENST00000367679ENST00000367688CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000367679ENST00000367688CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367679ENST00000367688CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367679ENST00000367689CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-intronENST00000367679ENST00000367689CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000367679ENST00000367689CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367679ENST00000367689CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367679ENST00000392064CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000367679ENST00000392064CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367679ENST00000392064CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367679ENST00000478442CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000367679ENST00000478442CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367679ENST00000478442CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367679ENST00000486220CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000367679ENST00000486220CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367679ENST00000486220CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367681ENST00000251507CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367681ENST00000251507CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367681ENST00000325589CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367681ENST00000325589CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367681ENST00000357444CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367681ENST00000357444CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367681ENST00000367688CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367681ENST00000367688CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367681ENST00000367689CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367681ENST00000367689CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367681ENST00000392064CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367681ENST00000392064CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367681ENST00000478442CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367681ENST00000478442CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000367681ENST00000486220CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000367681ENST00000486220CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000405362ENST00000251507CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000405362ENST00000251507CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000405362ENST00000325589CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000405362ENST00000325589CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000405362ENST00000357444CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000405362ENST00000357444CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000405362ENST00000367688CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000405362ENST00000367688CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000405362ENST00000367689CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000405362ENST00000367689CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000405362ENST00000392064CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000405362ENST00000392064CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000405362ENST00000478442CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000405362ENST00000478442CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000405362ENST00000486220CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
5CDS-intronENST00000405362ENST00000486220CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
5CDS-intronENST00000406752ENST00000251507CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-intronENST00000406752ENST00000251507CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000406752ENST00000325589CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-intronENST00000406752ENST00000325589CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000406752ENST00000357444CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-intronENST00000406752ENST00000357444CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000406752ENST00000367688CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-intronENST00000406752ENST00000367688CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000406752ENST00000367689CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
5CDS-intronENST00000406752ENST00000367689CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000406752ENST00000392064CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000406752ENST00000478442CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
5CDS-intronENST00000406752ENST00000486220CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-3UTRENST00000367681ENST00000347255CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000367681ENST00000347255CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-3UTRENST00000367681ENST00000367686CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000367681ENST00000367686CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-3UTRENST00000367681ENST00000367687CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000367681ENST00000367687CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-3UTRENST00000367681ENST00000392064CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000367681ENST00000478442CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000367681ENST00000486220CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000367681ENST00000489615CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000367681ENST00000489615CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-3UTRENST00000405362ENST00000347255CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000405362ENST00000347255CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-3UTRENST00000405362ENST00000367686CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000405362ENST00000367686CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-3UTRENST00000405362ENST00000367687CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000405362ENST00000367687CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-3UTRENST00000405362ENST00000392064CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000405362ENST00000478442CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000405362ENST00000486220CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000405362ENST00000489615CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-3UTRENST00000405362ENST00000489615CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-3UTRENST00000406752ENST00000347255CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
intron-3UTRENST00000406752ENST00000347255CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
intron-3UTRENST00000406752ENST00000367686CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
intron-3UTRENST00000406752ENST00000367686CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
intron-3UTRENST00000406752ENST00000367687CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
intron-3UTRENST00000406752ENST00000367687CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
intron-3UTRENST00000406752ENST00000489615CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
intron-3UTRENST00000406752ENST00000489615CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
intron-intronENST00000367681ENST00000251507CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-intronENST00000367681ENST00000251507CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000367681ENST00000325589CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-intronENST00000367681ENST00000325589CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000367681ENST00000357444CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-intronENST00000367681ENST00000357444CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000367681ENST00000367688CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-intronENST00000367681ENST00000367688CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000367681ENST00000367689CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-intronENST00000367681ENST00000367689CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000367681ENST00000392064CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000367681ENST00000478442CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000367681ENST00000486220CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000405362ENST00000251507CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-intronENST00000405362ENST00000251507CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000405362ENST00000325589CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-intronENST00000405362ENST00000325589CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000405362ENST00000357444CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-intronENST00000405362ENST00000357444CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000405362ENST00000367688CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-intronENST00000405362ENST00000367688CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000405362ENST00000367689CACYBPchr1

174969331

+RABGAP1Lchr1

174926594

+
intron-intronENST00000405362ENST00000367689CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000405362ENST00000392064CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000405362ENST00000478442CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000405362ENST00000486220CACYBPchr1

174969331

+RABGAP1Lchr1

174938414

+
intron-intronENST00000406752ENST00000251507CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
intron-intronENST00000406752ENST00000251507CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
intron-intronENST00000406752ENST00000325589CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
intron-intronENST00000406752ENST00000325589CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
intron-intronENST00000406752ENST00000357444CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
intron-intronENST00000406752ENST00000357444CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
intron-intronENST00000406752ENST00000367688CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
intron-intronENST00000406752ENST00000367688CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
intron-intronENST00000406752ENST00000367689CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
intron-intronENST00000406752ENST00000367689CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
intron-intronENST00000406752ENST00000392064CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
intron-intronENST00000406752ENST00000392064CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
intron-intronENST00000406752ENST00000478442CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
intron-intronENST00000406752ENST00000478442CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+
intron-intronENST00000406752ENST00000486220CACYBPchr1

174976333

+RABGAP1Lchr1

174957777

+
intron-intronENST00000406752ENST00000486220CACYBPchr1

174976333

+RABGAP1Lchr1

174958985

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for CACYBP-RABGAP1L


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
CACYBPchr1174976333+RABGAP1Lchr1174957777+0.0312800850.96871996
CACYBPchr1174976333+RABGAP1Lchr1174958985+0.0067577930.9932422
CACYBPchr1174969331+RABGAP1Lchr1174938413+5.32E-060.99999464
CACYBPchr1174969331+RABGAP1Lchr1174926593+2.92E-070.99999976
CACYBPchr1174976333+RABGAP1Lchr1174957777+0.0312800850.96871996
CACYBPchr1174976333+RABGAP1Lchr1174958985+0.0067577930.9932422
CACYBPchr1174969331+RABGAP1Lchr1174938413+5.32E-060.99999464
CACYBPchr1174969331+RABGAP1Lchr1174926593+2.92E-070.99999976


check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for CACYBP-RABGAP1L


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:174976333/:174957777)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for CACYBP-RABGAP1L


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for CACYBP-RABGAP1L


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for CACYBP-RABGAP1L


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for CACYBP-RABGAP1L


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneC0023893Liver Cirrhosis, Experimental1CTD_human