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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:ARHGAP5-NUMB (FusionGDB2 ID:HG394TG8650)

Fusion Gene Summary for ARHGAP5-NUMB

check button Fusion gene summary
Fusion gene informationFusion gene name: ARHGAP5-NUMB
Fusion gene ID: hg394tg8650
HgeneTgene
Gene symbol

ARHGAP5

NUMB

Gene ID

394

8650

Gene nameRho GTPase activating protein 5NUMB endocytic adaptor protein
SynonymsGFI2|RhoGAP5|p190-B|p190BRhoGAPC14orf41|S171|c14_5527
Cytomap('ARHGAP5')('NUMB')

14q12

14q24.2-q24.3

Type of geneprotein-codingprotein-coding
Descriptionrho GTPase-activating protein 5growth factor independent 2p100 RasGAP-associated p105 proteinp105 RhoGAPrho-type GTPase-activating protein 5protein numb homologh-Numbnumb homolog
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000345122, ENST00000432921, 
ENST00000539826, ENST00000556611, 
ENST00000396582, ENST00000433497, 
Fusion gene scores* DoF score10 X 4 X 7=28010 X 9 X 5=450
# samples 1210
** MAII scorelog2(12/280*10)=-1.22239242133645
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(10/450*10)=-2.16992500144231
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: ARHGAP5 [Title/Abstract] AND NUMB [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointARHGAP5(32563592)-NUMB(73822474), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4STADTCGA-CD-8527-01AARHGAP5chr14

32563592

+NUMBchr14

73822474

-


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Fusion Gene ORF analysis for ARHGAP5-NUMB

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-5UTRENST00000345122ENST00000355058ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000356296ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000359560ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000454166ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000535282ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000544991ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000554521ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000554546ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000555238ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000555394ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000555738ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000557597ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000559312ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000345122ENST00000560335ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000355058ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000356296ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000359560ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000454166ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000535282ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000544991ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000554521ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000554546ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000555238ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000555394ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000555738ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000557597ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000559312ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000432921ENST00000560335ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000355058ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000356296ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000359560ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000454166ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000535282ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000544991ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000554521ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000554546ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000555238ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000555394ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000555738ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000557597ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000559312ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000539826ENST00000560335ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000355058ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000356296ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000359560ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000454166ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000535282ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000544991ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000554521ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000554546ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000555238ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000555394ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000555738ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000557597ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000559312ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-5UTRENST00000556611ENST00000560335ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-intronENST00000345122ENST00000556600ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-intronENST00000345122ENST00000556772ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-intronENST00000432921ENST00000556600ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-intronENST00000432921ENST00000556772ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-intronENST00000539826ENST00000556600ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-intronENST00000539826ENST00000556772ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-intronENST00000556611ENST00000556600ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
5CDS-intronENST00000556611ENST00000556772ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000355058ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000356296ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000359560ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000454166ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000535282ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000544991ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000554521ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000554546ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000555238ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000555394ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000555738ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000557597ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000559312ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000396582ENST00000560335ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000355058ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000356296ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000359560ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000454166ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000535282ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000544991ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000554521ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000554546ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000555238ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000555394ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000555738ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000557597ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000559312ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-5UTRENST00000433497ENST00000560335ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-intronENST00000396582ENST00000556600ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-intronENST00000396582ENST00000556772ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-intronENST00000433497ENST00000556600ARHGAP5chr14

32563592

+NUMBchr14

73822474

-
intron-intronENST00000433497ENST00000556772ARHGAP5chr14

32563592

+NUMBchr14

73822474

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for ARHGAP5-NUMB


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)


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Fusion Protein Features for ARHGAP5-NUMB


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:32563592/:73822474)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for ARHGAP5-NUMB


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for ARHGAP5-NUMB


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for ARHGAP5-NUMB


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for ARHGAP5-NUMB


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneC4085590Cone-Rod Dystrophies1GENOMICS_ENGLAND