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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:FAM66C-CACNA1C (FusionGDB2 ID:HG440078TG775)

Fusion Gene Summary for FAM66C-CACNA1C

check button Fusion gene summary
Fusion gene informationFusion gene name: FAM66C-CACNA1C
Fusion gene ID: hg440078tg775
HgeneTgene
Gene symbol

FAM66C

CACNA1C

Gene ID

440078

775

Gene namefamily with sequence similarity 66 member Ccalcium voltage-gated channel subunit alpha1 C
Synonyms-CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8
Cytomap('FAM66C')('CACNA1C')

12p13.31

12p13.33

Type of genencRNAprotein-coding
Description-voltage-dependent L-type calcium channel subunit alpha-1CDHPR, alpha-1 subunitcalcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac musclecalcium channel, cardic dihydropyridine-sensitive, alpha-1 subunitcalcium channel, voltage-dependent,
Modification date2020031320200315
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000454799, ENST00000456135, 
ENST00000541558, ENST00000544214, 
ENST00000372173, ENST00000420514, 
ENST00000438689, ENST00000535567, 
ENST00000540566, 
Fusion gene scores* DoF score1 X 1 X 1=121 X 20 X 10=4200
# samples 124
** MAII scorelog2(1/1*10)=3.32192809488736log2(24/4200*10)=-4.12928301694497
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FAM66C [Title/Abstract] AND CACNA1C [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointFAM66C(8333348)-CACNA1C(2224390), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneCACNA1C

GO:0007204

positive regulation of cytosolic calcium ion concentration

12130699

TgeneCACNA1C

GO:0061577

calcium ion transmembrane transport via high voltage-gated calcium channel

15454078

TgeneCACNA1C

GO:0070588

calcium ion transmembrane transport

15454078



check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4PRADTCGA-CH-5792FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+


Top

Fusion Gene ORF analysis for FAM66C-CACNA1C

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-3CDSENST00000454799ENST00000327702FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000335762FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000344100FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000347598FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399591FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399595FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399597FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399601FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399603FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399606FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399617FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399621FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399629FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399634FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399637FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399638FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399641FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399644FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399649FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000399655FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000402845FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000406454FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000454799ENST00000480911FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000327702FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000335762FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000344100FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000347598FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399591FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399595FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399597FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399601FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399603FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399606FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399617FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399621FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399629FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399634FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399637FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399638FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399641FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399644FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399649FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000399655FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000402845FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000406454FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000456135ENST00000480911FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000327702FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000335762FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000344100FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000347598FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399591FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399595FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399597FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399601FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399603FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399606FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399617FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399621FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399629FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399634FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399637FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399638FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399641FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399644FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399649FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000399655FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000402845FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000406454FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000541558ENST00000480911FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000327702FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000335762FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000344100FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000347598FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399591FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399595FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399597FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399601FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399603FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399606FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399617FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399621FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399629FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399634FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399637FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399638FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399641FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399644FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399649FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000399655FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000402845FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000406454FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-3CDSENST00000544214ENST00000480911FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-intronENST00000454799ENST00000491104FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-intronENST00000456135ENST00000491104FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-intronENST00000541558ENST00000491104FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
3UTR-intronENST00000544214ENST00000491104FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000327702FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000335762FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000344100FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000347598FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399591FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399595FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399597FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399601FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399603FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399606FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399617FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399621FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399629FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399634FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399637FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399638FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399641FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399644FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399649FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000399655FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000402845FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000406454FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000372173ENST00000480911FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000327702FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000335762FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000344100FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000347598FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399591FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399595FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399597FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399601FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399603FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399606FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399617FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399621FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399629FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399634FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399637FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399638FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399641FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399644FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399649FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000399655FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000402845FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000406454FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000420514ENST00000480911FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000327702FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000335762FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000344100FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000347598FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399591FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399595FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399597FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399601FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399603FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399606FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399617FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399621FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399629FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399634FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399637FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399638FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399641FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399644FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399649FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000399655FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000402845FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000406454FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000438689ENST00000480911FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000327702FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000335762FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000344100FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000347598FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399591FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399595FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399597FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399601FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399603FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399606FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399617FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399621FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399629FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399634FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399637FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399638FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399641FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399644FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399649FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000399655FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000402845FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000406454FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000535567ENST00000480911FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000327702FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000335762FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000344100FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000347598FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399591FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399595FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399597FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399601FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399603FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399606FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399617FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399621FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399629FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399634FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399637FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399638FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399641FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399644FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399649FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000399655FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000402845FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000406454FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-3CDSENST00000540566ENST00000480911FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-intronENST00000372173ENST00000491104FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-intronENST00000420514ENST00000491104FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-intronENST00000438689ENST00000491104FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-intronENST00000535567ENST00000491104FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+
intron-intronENST00000540566ENST00000491104FAM66Cchr12

8333348

+CACNA1Cchr12

2224390

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for FAM66C-CACNA1C


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
FAM66Cchr128333348+CACNA1Cchr122224389+0.0021501520.9978498
FAM66Cchr128333348+CACNA1Cchr122224389+0.0021501520.9978498


check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for FAM66C-CACNA1C


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:8333348/:2224390)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for FAM66C-CACNA1C


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for FAM66C-CACNA1C


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for FAM66C-CACNA1C


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for FAM66C-CACNA1C


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneC0005586Bipolar Disorder9CTD_human;PSYGENET
TgeneC1832916Timothy syndrome8CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
TgeneC1142166Brugada Syndrome (disorder)7CLINGEN;GENOMICS_ENGLAND
TgeneC1269683Major Depressive Disorder6CTD_human;PSYGENET
TgeneC0011570Mental Depression5PSYGENET
TgeneC0011581Depressive disorder5PSYGENET
TgeneC0041696Unipolar Depression5PSYGENET
TgeneC0525045Mood Disorders5PSYGENET
TgeneC2678478Brugada Syndrome 35CTD_human;GENOMICS_ENGLAND;UNIPROT
TgeneC0005587Depression, Bipolar4CTD_human
TgeneC0024713Manic Disorder4CTD_human
TgeneC0036341Schizophrenia4PSYGENET
TgeneC0338831Manic4CTD_human
TgeneC0033975Psychotic Disorders3PSYGENET
TgeneC0178417Anhedonia2PSYGENET
TgeneC0002895Anemia, Sickle Cell1GENOMICS_ENGLAND
TgeneC0003257Antibody Deficiency Syndrome1CTD_human
TgeneC0003469Anxiety Disorders1CTD_human
TgeneC0003811Cardiac Arrhythmia1CTD_human
TgeneC0004352Autistic Disorder1CTD_human
TgeneC0007194Hypertrophic Cardiomyopathy1GENOMICS_ENGLAND
TgeneC0011574Involutional Depression1CTD_human
TgeneC0020538Hypertensive disease1CTD_human
TgeneC0020615Hypoglycemia1CTD_human
TgeneC0021051Immunologic Deficiency Syndromes1CTD_human
TgeneC0038441Stress Disorders, Traumatic1CTD_human
TgeneC0039070Syncope1GENOMICS_ENGLAND
TgeneC0085298Sudden Cardiac Death1GENOMICS_ENGLAND
TgeneC0151879Shortened QT interval1GENOMICS_ENGLAND
TgeneC0206762Limb Deformities, Congenital1CTD_human
TgeneC0234985Mental deterioration1CTD_human
TgeneC0271708Fasting Hypoglycemia1CTD_human
TgeneC0271710Reactive hypoglycemia1CTD_human
TgeneC0338656Impaired cognition1CTD_human
TgeneC0342788Renal carnitine transport defect1GENOMICS_ENGLAND
TgeneC0349204Nonorganic psychosis1PSYGENET
TgeneC0376280Anxiety States, Neurotic1CTD_human
TgeneC0392156Akathisia1CTD_human
TgeneC1270972Mild cognitive disorder1CTD_human
TgeneC1279420Anxiety neurosis (finding)1CTD_human
TgeneC1571983Involutional paraphrenia1CTD_human
TgeneC1571984Psychosis, Involutional1CTD_human
TgeneC3887612Psychomotor Agitation1CTD_human