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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:P2RX4-ZNF664 (FusionGDB2 ID:HG5025TG144348)

Fusion Gene Summary for P2RX4-ZNF664

check button Fusion gene summary
Fusion gene informationFusion gene name: P2RX4-ZNF664
Fusion gene ID: hg5025tg144348
HgeneTgene
Gene symbol

P2RX4

ZNF664

Gene ID

5025

144348

Gene namepurinergic receptor P2X 4zinc finger protein 664
SynonymsP2X4|P2X4RZFOC1|ZNF176
Cytomap('P2RX4')('ZNF664')

12q24.31

12q24.31

Type of geneprotein-codingprotein-coding
DescriptionP2X purinoceptor 4ATP receptorATP-gated cation channel proteinP2X receptor, subunit 4purinergic receptor P2X, ligand gated ion channel, 4purinergic receptor P2X4purinoceptor P2X4zinc finger protein 664zinc finger Organ of Corti 1zinc finger protein 176zinc finger protein from organ of Corti
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000540930, ENST00000337233, 
ENST00000359949, ENST00000541532, 
ENST00000543171, 
Fusion gene scores* DoF score3 X 2 X 3=1810 X 8 X 5=400
# samples 311
** MAII scorelog2(3/18*10)=0.736965594166206
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(11/400*10)=-1.86249647625006
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: P2RX4 [Title/Abstract] AND ZNF664 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointP2RX4(121648101)-ZNF664(124495928), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneP2RX4

GO:0007165

signal transduction

9016352

HgeneP2RX4

GO:0010524

positive regulation of calcium ion transport into cytosol

10969036

HgeneP2RX4

GO:0033198

response to ATP

9016352

HgeneP2RX4

GO:0034220

ion transmembrane transport

10515189

HgeneP2RX4

GO:0034405

response to fluid shear stress

10969036

HgeneP2RX4

GO:0050850

positive regulation of calcium-mediated signaling

10969036

HgeneP2RX4

GO:0051899

membrane depolarization

9016352

HgeneP2RX4

GO:0070588

calcium ion transmembrane transport

9016352

HgeneP2RX4

GO:0071318

cellular response to ATP

10515189

HgeneP2RX4

GO:0097190

apoptotic signaling pathway

17264311



check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4LUADTCGA-73-4668-01AP2RX4chr12

121648101

+ZNF664chr12

124495928

+


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Fusion Gene ORF analysis for P2RX4-ZNF664

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-3UTRENST00000540930ENST00000537532P2RX4chr12

121648101

+ZNF664chr12

124495928

+
3UTR-5UTRENST00000540930ENST00000337815P2RX4chr12

121648101

+ZNF664chr12

124495928

+
3UTR-5UTRENST00000540930ENST00000392404P2RX4chr12

121648101

+ZNF664chr12

124495928

+
3UTR-5UTRENST00000540930ENST00000538932P2RX4chr12

121648101

+ZNF664chr12

124495928

+
3UTR-5UTRENST00000540930ENST00000539644P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-3UTRENST00000337233ENST00000537532P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-3UTRENST00000359949ENST00000537532P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-3UTRENST00000541532ENST00000537532P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-5UTRENST00000337233ENST00000337815P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-5UTRENST00000337233ENST00000392404P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-5UTRENST00000337233ENST00000538932P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-5UTRENST00000337233ENST00000539644P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-5UTRENST00000359949ENST00000337815P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-5UTRENST00000359949ENST00000392404P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-5UTRENST00000359949ENST00000538932P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-5UTRENST00000359949ENST00000539644P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-5UTRENST00000541532ENST00000337815P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-5UTRENST00000541532ENST00000392404P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-5UTRENST00000541532ENST00000538932P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5CDS-5UTRENST00000541532ENST00000539644P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5UTR-3UTRENST00000543171ENST00000537532P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5UTR-5UTRENST00000543171ENST00000337815P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5UTR-5UTRENST00000543171ENST00000392404P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5UTR-5UTRENST00000543171ENST00000538932P2RX4chr12

121648101

+ZNF664chr12

124495928

+
5UTR-5UTRENST00000543171ENST00000539644P2RX4chr12

121648101

+ZNF664chr12

124495928

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for P2RX4-ZNF664


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
P2RX4chr12121648101+ZNF664chr12124495927+2.10E-101
P2RX4chr12121648101+ZNF664chr12124495927+2.10E-101


check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for P2RX4-ZNF664


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:121648101/:124495928)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for P2RX4-ZNF664


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for P2RX4-ZNF664


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for P2RX4-ZNF664


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for P2RX4-ZNF664


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneP2RX4C0014544Epilepsy1CTD_human
HgeneP2RX4C0014556Epilepsy, Temporal Lobe1CTD_human
HgeneP2RX4C0014558Uncinate Epilepsy1CTD_human
HgeneP2RX4C0086237Epilepsy, Cryptogenic1CTD_human
HgeneP2RX4C0236018Aura1CTD_human
HgeneP2RX4C0393672Epilepsy, Benign Psychomotor, Childhood1CTD_human
HgeneP2RX4C0393682Epilepsy, Lateral Temporal1CTD_human
HgeneP2RX4C0751111Awakening Epilepsy1CTD_human