|
||||||
|
 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:ASB3-MED13L (FusionGDB2 ID:HG51130TG23389) |
Fusion Gene Summary for ASB3-MED13L |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ASB3-MED13L | Fusion gene ID: hg51130tg23389 | Hgene | Tgene | Gene symbol | ASB3 | MED13L | Gene ID | 51130 | 23389 |
| Gene name | ankyrin repeat and SOCS box containing 3 | mediator complex subunit 13L | |
| Synonyms | ASB-3 | MRFACD|PROSIT240|THRAP2|TRAP240L | |
| Cytomap | ('ASB3')('MED13L') 2p16.2 | 12q24.21 | |
| Type of gene | protein-coding | protein-coding | |
| Description | ankyrin repeat and SOCS box protein 3 | mediator of RNA polymerase II transcription subunit 13-likemediator complex subunit 13 likethyroid hormone receptor-associated protein 2thyroid hormone receptor-associated protein complex 240 kDa component-like | |
| Modification date | 20200313 | 20200320 | |
| UniProtAcc | Q9Y575 | . | |
| Ensembl transtripts involved in fusion gene | ENST00000406625, ENST00000498475, | ||
| Fusion gene scores | * DoF score | 8 X 8 X 4=256 | 14 X 14 X 4=784 |
| # samples | 8 | 15 | |
| ** MAII score | log2(8/256*10)=-1.67807190511264 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(15/784*10)=-2.38589115361933 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: ASB3 [Title/Abstract] AND MED13L [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | ASB3(53927408)-MED13L(116534557), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | ASB3-MED13L seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ASB3-MED13L seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ASB3-MED13L seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. ASB3-MED13L seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene breakpoints across ASB3 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
 |
| Fusion gene breakpoints across MED13L (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
 |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | STAD | TCGA-CD-8527-01A | ASB3 | chr2 | 53927408 | - | MED13L | chr12 | 116534557 | - |
Top |
Fusion Gene ORF analysis for ASB3-MED13L |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-intron | ENST00000406625 | ENST00000551197 | ASB3 | chr2 | 53927408 | - | MED13L | chr12 | 116534557 | - |
| In-frame | ENST00000406625 | ENST00000281928 | ASB3 | chr2 | 53927408 | - | MED13L | chr12 | 116534557 | - |
| intron-3CDS | ENST00000498475 | ENST00000281928 | ASB3 | chr2 | 53927408 | - | MED13L | chr12 | 116534557 | - |
| intron-intron | ENST00000498475 | ENST00000551197 | ASB3 | chr2 | 53927408 | - | MED13L | chr12 | 116534557 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000406625 | ASB3 | chr2 | 53927408 | - | ENST00000281928 | MED13L | chr12 | 116534557 | - | 10512 | 1584 | 175 | 7821 | 2548 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000406625 | ENST00000281928 | ASB3 | chr2 | 53927408 | - | MED13L | chr12 | 116534557 | - | 0.000178514 | 0.9998215 |
Top |
Fusion Genomic Features for ASB3-MED13L |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
 |
Top |
Fusion Protein Features for ASB3-MED13L |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:53927408/chr12:116534557) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ASB3 | . |
| FUNCTION: Probable substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Recognizes TNFRSF1B. {ECO:0000269|PubMed:15899873}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | ASB3 | chr2:53927408 | chr12:116534557 | ENST00000406625 | - | 8 | 10 | 111_140 | 447 | 554.0 | Repeat | Note=ANK 4 |
| Hgene | ASB3 | chr2:53927408 | chr12:116534557 | ENST00000406625 | - | 8 | 10 | 145_174 | 447 | 554.0 | Repeat | Note=ANK 5 |
| Hgene | ASB3 | chr2:53927408 | chr12:116534557 | ENST00000406625 | - | 8 | 10 | 178_207 | 447 | 554.0 | Repeat | Note=ANK 6 |
| Hgene | ASB3 | chr2:53927408 | chr12:116534557 | ENST00000406625 | - | 8 | 10 | 211_240 | 447 | 554.0 | Repeat | Note=ANK 7 |
| Hgene | ASB3 | chr2:53927408 | chr12:116534557 | ENST00000406625 | - | 8 | 10 | 246_275 | 447 | 554.0 | Repeat | Note=ANK 8 |
| Hgene | ASB3 | chr2:53927408 | chr12:116534557 | ENST00000406625 | - | 8 | 10 | 279_308 | 447 | 554.0 | Repeat | Note=ANK 9 |
| Hgene | ASB3 | chr2:53927408 | chr12:116534557 | ENST00000406625 | - | 8 | 10 | 315_346 | 447 | 554.0 | Repeat | Note=ANK 10 |
| Hgene | ASB3 | chr2:53927408 | chr12:116534557 | ENST00000406625 | - | 8 | 10 | 348_373 | 447 | 554.0 | Repeat | Note=ANK 11 |
| Hgene | ASB3 | chr2:53927408 | chr12:116534557 | ENST00000406625 | - | 8 | 10 | 42_71 | 447 | 554.0 | Repeat | Note=ANK 2 |
| Hgene | ASB3 | chr2:53927408 | chr12:116534557 | ENST00000406625 | - | 8 | 10 | 78_107 | 447 | 554.0 | Repeat | Note=ANK 3 |
| Hgene | ASB3 | chr2:53927408 | chr12:116534557 | ENST00000406625 | - | 8 | 10 | 9_38 | 447 | 554.0 | Repeat | Note=ANK 1 |
| Tgene | MED13L | chr2:53927408 | chr12:116534557 | ENST00000281928 | 2 | 31 | 1566_1610 | 131 | 2211.0 | Compositional bias | Note=Ser-rich | |
| Tgene | MED13L | chr2:53927408 | chr12:116534557 | ENST00000281928 | 2 | 31 | 1225_1229 | 131 | 2211.0 | Motif | Note=LXXLL motif 2 | |
| Tgene | MED13L | chr2:53927408 | chr12:116534557 | ENST00000281928 | 2 | 31 | 669_673 | 131 | 2211.0 | Motif | Note=LXXLL motif 1 | |
| Tgene | MED13L | chr2:53927408 | chr12:116534557 | ENST00000281928 | 2 | 31 | 1380_1401 | 131 | 2211.0 | Region | Note=Leucine-zipper |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | ASB3 | chr2:53927408 | chr12:116534557 | ENST00000406625 | - | 8 | 10 | 441_504 | 447 | 554.0 | Domain | SOCS box |
Top |
Fusion Gene Sequence for ASB3-MED13L |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >7012_7012_1_ASB3-MED13L_ASB3_chr2_53927408_ENST00000406625_MED13L_chr12_116534557_ENST00000281928_length(transcript)=10512nt_BP=1584nt AAAACTGCGAGCCTGAAAAACCTGGCTCAAGCGCCCCTCGTGAGGCGGGCAGCGGGAGTGGCCGGGCTCTGGGCCCCAGGAGGCAGGCGA CGGAGGCGCGGAGGGTGCGGGGCGCAGGCGGGACGCCAGGCCCGGGTGTCCGGCGGAGGGGGCGGTGCCCTCGGCGTCTCCGTGACTGCG CCTCTGCGCCCGCGTCTTGCCGCGGCTCCCGGGATGCGCGGAGGCGGTGGCGATGGCGATGATGCCTCTAGTCCTGCATCATCCAGAGCG GCAGGCGGAGCTGGGGTCCGGACTGCGAGATGGAGGAGGGGCGGCGCTGCGGCCACCCGGCAGACTGGTCAAACAAATGGATTTTACAGA GGCTTACGCGGACACGTGCTCTACAGTTGGACTTGCTGCCAGGGAAGGCAATGTTAAAGTCTTAAGGAAACTGCTCAAAAAGGGCCGAAG TGTCGATGTTGCTGATAACAGGGGATGGATGCCAATTCATGAAGCAGCTTATCACAACTCTGTAGAATGTTTGCAAATGTTAATTAATGC AGATTCATCTGAAAACTACATTAAGATGAAGACCTTTGAAGGTTTCTGTGCTTTGCATCTCGCTGCAAGTCAAGGACATTGGAAAATCGT ACAGATTCTTTTAGAAGCTGGGGCAGATCCTAATGCAACTACTTTAGAAGAAACGACACCATTGTTTTTAGCTGTTGAAAATGGACAGAT AGATGTGTTAAGGCTGTTGCTTCAACACGGAGCAAATGTTAATGGATCCCATTCTATGTGTGGATGGAACTCCTTGCACCAGGCTTCTTT TCAGGAAAATGCTGAGATCATAAAATTGCTTCTTAGAAAAGGAGCAAACAAGGAATGCCAGGATGACTTTGGAATCACACCTTTATTTGT GGCTGCTCAGTATGGCAAGCTAGAAAGCTTGAGCATACTTATTTCATCGGGTGCAAATGTCAATTGTCAAGCCTTGGACAAAGCTACACC CTTGTTCATTGCTGCTCAAGAGGGACACACAAAATGTGTGGAGCTTTTGCTCTCCAGTGGGGCAGATCCTGATCTTTACTGTAATGAGGA CAGTTGGCAGTTACCTATTCATGCAGCTGCACAAATGGGCCATACAAAAATCTTGGACTTGTTAATACCACTTACTAACCGGGCCTGTGA CACTGGGCTAAACAAAGTAAGCCCTGTTTACTCAGCAGTGTTTGGGGGACATGAAGATTGCCTAGAAATATTACTCCGGAATGGCTACAG CCCAGACGCCCAGGCGTGCCTTGTTTTTGGATTCAGTTCTCCTGTGTGCATGGCTTTCCAAAAGGACTGTGAGTTCTTTGGAATTGTGAA CATTCTTTTGAAATATGGAGCCCAGATAAATGAACTTCATTTGGCATACTGCCTGAAGTACGAGAAGTTTTCGATATTTCGCTACTTTTT GAGGAAAGGTTGCTCATTGGGACCATGGAACCATATATATGAATTTGTAAATCATGCAATTAAAGCACAAGCAAAATATAAGGAGTGGTT GCCACATCTTCTGGTTGCTGGATTTGACCCACTGATTCTACTGTGCAATTCTTGGTGCCTAATGGATAAGAACTTCGTTAGGATTGGGAA ATGGTTTGTCCGACCCTACGAAAAGGATGAAAAGCCAGTCAACAAAAGTGAGCATTTGTCCTGTGCTTTCACATTCTTTCTGCATGGAGA AAGTAATGTATGCACAAGTGTGGAGATTGCCCAGCACCAGCCAATTTATTTGATCAATGAGGAGCATATACACATGGCTCAGTCTTCACC TGCACCATTTCAAGTACTGGTAAGTCCTTATGGCTTAAATGGGACGCTAACAGGCCAAGCATACAAGATGTCAGACCCAGCCACTCGTAA GTTGATTGAGGAATGGCAGTATTTCTACCCGATGGTGCTAAAAAAGAAAGAAGAATCGAAAGAGGAAGACGAGTTGGGATATGATGATGA TTTCCCTGTGGCAGTTGAAGTAATTGTTGGTGGTGTTCGGATGGTTTACCCTTCAGCATTTGTTTTGATCTCTCAGAATGACATCCCGGT TCCTCAGAGTGTTGCCAGTGCTGGAGGCCACATTGCAGTTGGGCAGCAAGGGCTTGGTAGTGTGAAGGACCCAAGTAACTGTGGGATGCC TCTGACCCCTCCCACCTCTCCAGAACAGGCTATCCTAGGTGAGAGTGGAGGTATGCAGAGTGCTGCCAGTCACCTGGTTTCCCAAGATGG AGGGATGATAACGATGCACAGTCCAAAGAGATCGGGGAAGATTCCTCCAAAACTCCACAATCATATGGTCCATCGAGTCTGGAAGGAATG CATCCTCAACAGAACCCAGTCCAAGAGGAGCCAAATGTCAACTCCAACTCTTGAAGAAGAGCCTGCTAGCAATCCTGCTACTTGGGATTT TGTGGATCCAACCCAAAGAGTCAGCTGTTCTTGTTCCAGGCATAAGCTTTTAAAACGTTGTGCAGTCGGGCCCAATCGACCTCCCACAGT ATCTCAACCAGGGTTCAGTGCAGGACCATCATCATCTTCATCTTTACCACCTCCTGCTTCTTCTAAGCACAAAACAGCAGAAAGACAGGA AAAAGGAGACAAGCTGCAAAAGAGACCCTTAATACCATTTCACCATAGGCCCTCTGTGGCCGAAGAATTATGCATGGAGCAAGATACACC AGGACAGAAACTAGGGTTGGCAGGGATAGACTCCTCCTTAGAGGTGTCTAGCAGTAGGAAATATGATAAGCAAATGGCCGTGCCTTCCAG AAATACAAGCAAGCAAATGAATCTGAATCCTATGGATTCACCTCATTCCCCTATATCCCCTCTGCCACCAACACTCAGCCCTCAGCCACG AGGTCAGGAAACAGAGAGTTTGGACCCACCATCGGTCCCTGTGAATCCAGCCCTTTATGGAAATGGACTAGAACTCCAGCAGTTGTCTAC TCTGGATGACAGAACTGTCCTCGTAGGCCAAAGACTGCCTCTCATGGCAGAGGTCAGCGAGACAGCCTTATATTGTGGGATTAGGCCCTC GAACCCGGAGTCATCAGAAAAGTGGTGGCATAGTTATCGTCTCCCACCCAGTGATGATGCTGAGTTCAGGCCTCCAGAGCTCCAGGGTGA GAGATGTGATGCCAAAATGGAGGTAAACTCAGAGAGCACTGCATTGCAAAGACTCTTAGCACAACCTAACAAACGGTTTAAAATCTGGCA AGACAAACAGCCCCAGTTGCAGCCACTCCACTTCCTTGACCCATTGCCTCTATCACAACAACCTGGAGACAGTTTGGGAGAAGTGAATGA CCCATATACCTTTGAAGATGGTGACATAAAATACATCTTTACAGCCAACAAGAAATGCAAACAAGGGACGGAGAAAGATTCCCTGAAAAA GAATAAGTCAGAGGATGGATTTGGTACCAAGGATGTCACTACACCAGGTCATTCCACGCCGGTGCCTGATGGGAAAAATGCCATGTCTAT TTTCAGTTCTGCTACTAAAACAGATGTCCGGCAGGATAATGCTGCTGGCAGAGCTGGCTCCAGTAGCCTTACACAGGTAACAGATTTGGC ACCTTCCCTGCATGACTTAGACAACATCTTTGATAATTCTGATGACGACGAACTTGGGGCTGTATCACCTGCTCTGCGCTCATCAAAAAT GCCTGCAGTTGGGACAGAAGACCGACCTCTTGGGAAGGATGGAAGAGCTGCTGTTCCTTATCCACCAACAGTTGCAGACTTGCAAAGGAT GTTTCCCACTCCACCATCTTTGGAACAGCATCCTGCATTTTCTCCTGTGATGAATTATAAAGATGGGATCAGCTCAGAGACAGTGACAGC ATTAGGCATGATGGAGAGCCCTATGGTCAGTATGGTTTCAACACAACTCACAGAATTCAAAATGGAAGTGGAAGATGGATTAGGAAGTCC CAAGCCCGAGGAAATTAAGGACTTTTCATATGTGCACAAAGTTCCATCCTTTCAACCTTTTGTGGGATCCTCCATGTTTGCTCCACTGAA GATGTTGCCGAGCCATTGTTTGCTACCTCTGAAGATACCTGATGCCTGTCTGTTTCGGCCTTCATGGGCAATTCCTCCTAAAATTGAACA ACTGCCCATGCCCCCTGCAGCCACTTTCATTAGAGATGGCTACAATAACGTGCCTAGTGTTGGGAGCCTAGCAGATCCAGACTATCTGAA CACACCACAGATGAACACACCCGTGACGTTGAACAGCGCTGCCCCAGCCAGCAATAGTGGGGCAGGAGTCCTACCATCTCCAGCAACCCC TCGCTTCTCTGTCCCCACACCACGAACCCCCAGGACCCCAAGAACTCCCAGAGGTGGGGGCACTGCCAGTGGTCAAGGGTCTGTTAAGTA TGATAGCACCGATCAAGGATCACCAGCCTCCACCCCCTCTACTACACGGCCCCTCAACTCTGTGGAGCCCGCCACCATGCAGCCAATTCC CGAAGCCCACAGCCTCTATGTTACCCTGATTCTCTCCGATTCCGTGATGAATATCTTTAAAGACAGAAACTTTGACAGCTGTTGCATCTG TGCCTGCAACATGAACATCAAAGGGGCGGATGTCGGGCTTTACATCCCCGATTCTTCCAATGAGGACCAGTACCGCTGTACCTGTGGGTT TAGTGCGATTATGAACCGCAAACTTGGCTACAATTCAGGACTCTTCCTTGAAGATGAGTTGGATATTTTTGGGAAGAATTCTGATATTGG TCAGGCTGCAGAGAGGCGCTTAATGATGTGTCAGTCCACCTTCCTTCCTCAGGTGGAAGGAACCAAAAAACCCCAGGAGCCACCCATAAG CCTTCTCCTCCTCCTCCAGAATCAACACACACAACCTTTTGCTTCACTGAATTTCCTGGACTACATTTCCTCTAACAATCGCCAAACTCT TCCCTGTGTAAGCTGGAGTTATGACCGGGTGCAAGCAGATAATAATGATTACTGGACGGAATGCTTTAATGCGTTGGAGCAGGGGCGGCA GTATGTGGATAACCCCACTGGTGGAAAAGTGGACGAAGCTCTGGTGAGAAGTGCCACTGTGCACTCTTGGCCTCACAGCAATGTGCTGGA CATCAGCATGCTCTCCTCCCAGGATGTGGTTCGTATGCTGTTGTCCCTGCAGCCCTTTCTCCAAGATGCCATCCAAAAGAAGCGCACGGG CAGGACCTGGGAGAACATCCAGCATGTGCAGGGACCACTCACTTGGCAGCAGTTCCATAAAATGGCAGGACGGGGAACCTACGGTTCGGA AGAATCTCCTGAGCCGTTGCCCATCCCCACTCTGCTGGTAGGCTATGACAAGGATTTCCTCACCATCTCGCCATTCTCCTTGCCGTTTTG GGAGAGGCTCTTGTTGGACCCATATGGGGGCCACCGTGATGTTGCCTATATTGTGGTGTGTCCAGAAAATGAGGCCTTGCTCGAAGGAGC CAAAACTTTCTTCAGGGACTTGAGTGCTGTATACGAGATGTGTAGGCTTGGGCAGCACAAGCCCATCTGCAAAGTGCTACGTGACGGGAT CATGCGCGTGGGAAAAACTGTGGCACAGAAGCTGACAGATGAGCTTGTGAGTGAGTGGTTTAACCAGCCTTGGAGCGGCGAGGAGAATGA CAATCATTCCAGACTCAAACTTTATGCGCAAGTTTGCCGCCATCACCTAGCACCTTATTTAGCCACTCTGCAGCTTGATAGCAGCCTATT GATACCACCTAAATACCAGACCCCACCAGCAGCAGCACAGGGACAAGCTACGCCAGGGAATGCTGGGCCCTTAGCTCCAAATGGATCAGC AGCTCCCCCAGCTGGCAGTGCATTTAATCCCACCTCGAATAGTAGTTCTACAAATCCTGCAGCAAGTAGTTCTGCATCTGGTTCCTCTGT GCCACCGGTCTCATCGTCTGCCTCTGCTCCTGGTATTAGCCAGATAAGCACTACCTCTTCTTCAGGATTCAGTGGTAGTGTTGGAGGGCA GAACCCCAGCACTGGGGGCATTTCTGCGGATAGAACGCAAGGGAACATAGGCTGTGGTGGAGACACTGACCCTGGGCAGAGCTCTTCTCA GCCCTCACAGGATGGACAAGAGAGTGTTACAGAAAGGGAGAGAATAGGAATTCCCACGGAGCCTGACTCTGCAGACAGCCATGCCCACCC TCCAGCTGTTGTCATTTACATGGTGGACCCGTTCACGTATGCTGCAGAGGAGGACTCCACTTCTGGGAACTTTTGGCTGTTGAGCTTGAT GCGCTGCTACACAGAAATGCTGGATAATTTACCTGAGCATATGAGAAATTCTTTCATTCTCCAGATTGTGCCTTGCCAGTACATGCTGCA GACAATGAAGGATGAGCAAGTTTTCTACATTCAATACTTGAAGTCCATGGCATTTTCAGTGTACTGCCAGTGCAGGCGACCACTGCCTAC ACAGATCCACATTAAATCCCTCACGGGATTTGGGCCTGCAGCCAGCATTGAGATGACCCTCAAGAACCCTGAGCGGCCCAGCCCAATCCA GCTTTACTCCCCTCCCTTTATATTGGCCCCAATCAAAGACAAGCAGACAGAGCTGGGAGAGACGTTTGGTGAGGCGAGCCAGAAATACAA TGTGCTCTTCGTGGGCTATTGTCTGTCTCACGACCAGCGCTGGCTTTTGGCTTCCTGCACTGACCTCCATGGGGAATTATTAGAGACCTG CGTTGTAAATATTGCTTTACCAAACAGGTCACGGAGGAGTAAAGTATCTGCACGTAAAATTGGACTACAGAAGTTATGGGAGTGGTGCAT AGGGATTGTCCAAATGACATCTCTACCCTGGAGAGTTGTAATCGGGCGACTTGGGCGTCTTGGCCATGGGGAGCTTAAAGATTGGAGTAT CCTCCTTGGAGAATGTTCACTACAGACAATCAGCAAAAAGCTCAAGGATGTGTGCCGGATGTGTGGAATCTCTGCCGCAGACTCTCCTTC TATCCTTAGTGCCTGCCTGGTTGCCATGGAGCCCCAGGGGTCCTTTGTAGTGATGCCAGATGCTGTCACAATGGGCTCTGTTTTTGGCCG AAGTACTGCACTGAACATGCAGTCATCTCAGCTCAACACCCCTCAAGATGCTTCTTGTACACACATCTTGGTGTTCCCAACATCATCAAC CATCCAGGTGGCTCCAGCCAACTACCCCAATGAAGATGGGTTTAGCCCCAACAATGATGATATGTTTGTTGACCTTCCATTCCCAGATGA TATGGACAATGATATTGGCATATTAATGACTGGGAACCTCCATTCCTCTCCCAACTCTTCCCCAGTACCCTCCCCAGGCTCTCCTTCTGG AATTGGTGTGGGCTCTCACTTCCAGCATAGTCGGAGCCAGGGTGAGCGTCTTCTTTCTAGAGAAGCACCAGAGGAGCTAAAGCAGCAGCC CCTGGCCCTTGGGTATTTTGTATCAACTGCCAAAGCTGAGAATCTTCCCCAGTGGTTTTGGTCATCGTGTCCCCAGGCTCAAAACCAGTG CCCTCTCTTCTTAAAGGCTTCGCTGCATCACCACATTTCAGTAGCACAGACAGACGAACTTCTGCCTGCCAGGAATTCTCAGCGGGTTCC ACACCCTCTTGACTCCAAAACCACGTCGGATGTTTTAAGGTTTGTTTTGGAGCAGTACAACGCTCTGTCCTGGCTCACGTGCAATCCGGC CACCCAGGACCGTACTTCCTGCCTTCCCGTCCACTTTGTGGTGCTCACTCAGTTGTACAATGCCATCATGAATATACTTTAATTGGAAAA GCACTTGTTCTCTCTGGCTCAGTTCCTTCTCCCTGCAACCTCAGTCCAAGGAACCTGCTACACTCTGCAAATAACCCACATCCTTTTCTT CAGACCACTCTCCACAGTCCTGCACTGTGATTCCTTCTCAGCAGGCACATGTCAATTCTGCAGTGTTCATTACCAGAGTGACTCCTTGAC ACTTCTCTCATGGACCTGGAAACTTCCATAAGTGGTGACTTTCAGCCAGTGCGGTGGTGTGTGTAGCCCCAACCACTGGTCCCCAGGAAG TGGTGGTGGTTGATGGCTTTTCAGCGGGAAACAGAAGAGACAGTGTCCTTTTGCACAAGAGTCTGTGTTTTCAGCCTCTGTATACAATTG AGGGCAGTCTAGCCCTTTGGATGAAATCCTCTTAGTTACTGGTGTATGGCCTGTGGGTTACCTGAACTCCATAATCTGGGACTTTTTAAA AATAAGAACCAGCTCAAGTACATGGTTTCATACTGGGGTTTCTGTCTCCCTAGTGTTCCCATCCAGATTAGCATGAGTGCTTTGGTTGAC TTCAAACCTGTGTGTCAATGCAGAAGGTCTGGAGACAGCTTCATTTTGTTTATTTATTTTAATTTGTTTTGTCATATGGTTTTTGTGACT TTATTTTTTTAATTCACAAGGACCAGGTACAGTAGCTGAAACCCAATTCAGATCCACCATAGGATTCTTTGACTACATACCTCTGTCCTA GAAGCCGGAAAAGGAGTAAAAACACATTGGGGAGATCATGCCTAAAAGTAATATATTCAAAACCACCCAGCAGTAGGTTTTGTTAACAAC AAACTGGATTTTAAAAGTTCTGCCATGTTAAGTGGCCAGCATTTCATGAAGGATAACATTTTTATACAGAAGGCAGTCAAGCTCAACTCA GAGCCATGGAGGCAAGTACCTTAATTAGTTTTATATAGTCACAACGGAAATATATTTTCTAGTGAATTCTTATTGGAAGCCAGGTCTCTC CTCTCATTAGATCAAAAGGGACTTATGTACATACAACAATTGAAAGTGTTTGCTCATGAAATCAGTTATAAATATGGTGAATTTTTTCTG GACCATAGGAATATTATTTCAAAGAAATATTACAACTTAACCATTAAATTAGTACTTGAAGTTGAGCCTTTGTGGTGGGACTTTTTAAAA AAATGCCTTTTTAAAGCATTAATGGCTAATTGAAGTATTTTATGACTCCTCATTCCTGGCCCAGAGGGTTGTCTTTGAAACCCTGTTTCT AACCCTTGTGTTGTGTGTTTCTGTCTGAGGACAGTGGGTGTGTACTGGCCTCCCGGGAGCCACTGTGACCAGGCCTTTGAGCTCTTGTCA TCTGTGGAGAGAATCATGCAAATTTTAAAAGTTCTTCCAAGAGACTTCCATGTCCTGGTTATTAACAAAAAAGGAAAAATGTAATAATTG ATATGATTTTGTAAAAGTATTTTTCTTGAAATAATCTAAAGTTTAAAACATTATATTAAAAAAAAAGTTGTGTGGTGGGAATGTGAAAGC AGAGAAATAACTTGTAAATGGATAATTTTGTTCTCTGTACCACCAGTTGAAGGGGGGGTTGACTTTCGCAATGTATAGGATAAAAAATCT GATATATCAAACCATTTGTATCTAATGTGTACAGTGTAAAATTGACTTTAAAAATATTGCAGTGCTATTTTTTCTTAATCAGAAAGGAAA ATTCTCAAGGCCTTTTGAAGAGCATAAGAAGATGAAGATTGTAAACTTGTATAAAATTATCTTGGTGAGAAGACAAATTGTAAAGTAGAT ATTTGTAATCTTTTACCACTTTGGGGTTGCTTTTTTCCCGGAATTCATCAGAACTTTGAATTTTTTTTTTAAATGGGCTGTTTTTAATGC AGGGGCTTTTCTTCCCTAGAAACCCAATTCTAAGCAGAAAAAGAAAAAAAACACAAAAAATAAAAAACCCCTACAAAAAAACTTTAAAAA AAATGGCAGCAAAGGGTAGTTTTCATCTGGTGTCTTTTATTTAAGTTTTTTAAGTTAAGAAAAGCTGGTGACATATTTATACGTTTTTGT GCAAAAATAAATGAATGGCAATAGATTTTAAAAAATCTTATTATGTACTTCTGTGTGAAAAAGTCTGTATAATATTTCCCTTAAATATGC ATTATTTTACTTGTGAGTTTTTTACTGAATTAATCTGAAATGTACAAGCCCTGGATTTGCTACAGAGTGAGAAGTTATTTTATTTTTTTT TATTTTTAATTTTGGAAATTCTGCAGAAATCAGAACTCTTACCATGGTTTGAACAAAAAAAGGGGAAATGGGGAGGGGAAAAGGGTGGGA TTGTCCAGCATGCTTGTATGTATATTTCAGAACCTTTTTTAAATGTAAAAGCTGTACATTTCTGGGAAGTTCTGAATTTCTTTTGTTTCC TTTTTTCCTTCAAGCATTTTGCAGTGAGCTTCTTTTATATATAGCAAACAATTTGAAAGAATACAAAAATATGTGAAGTTCATTTAAAAA AATAACTACAGTATAGCGCTGGTACAGTACACTAAAAGACTTTGATAAAAAGAAACAATAATAAAAGGCCTCCATTTTAAATGTCATTCA >7012_7012_1_ASB3-MED13L_ASB3_chr2_53927408_ENST00000406625_MED13L_chr12_116534557_ENST00000281928_length(amino acids)=2548AA_BP=470 MRLCARVLPRLPGCAEAVAMAMMPLVLHHPERQAELGSGLRDGGGAALRPPGRLVKQMDFTEAYADTCSTVGLAAREGNVKVLRKLLKKG RSVDVADNRGWMPIHEAAYHNSVECLQMLINADSSENYIKMKTFEGFCALHLAASQGHWKIVQILLEAGADPNATTLEETTPLFLAVENG QIDVLRLLLQHGANVNGSHSMCGWNSLHQASFQENAEIIKLLLRKGANKECQDDFGITPLFVAAQYGKLESLSILISSGANVNCQALDKA TPLFIAAQEGHTKCVELLLSSGADPDLYCNEDSWQLPIHAAAQMGHTKILDLLIPLTNRACDTGLNKVSPVYSAVFGGHEDCLEILLRNG YSPDAQACLVFGFSSPVCMAFQKDCEFFGIVNILLKYGAQINELHLAYCLKYEKFSIFRYFLRKGCSLGPWNHIYEFVNHAIKAQAKYKE WLPHLLVAGFDPLILLCNSWCLMDKNFVRIGKWFVRPYEKDEKPVNKSEHLSCAFTFFLHGESNVCTSVEIAQHQPIYLINEEHIHMAQS SPAPFQVLVSPYGLNGTLTGQAYKMSDPATRKLIEEWQYFYPMVLKKKEESKEEDELGYDDDFPVAVEVIVGGVRMVYPSAFVLISQNDI PVPQSVASAGGHIAVGQQGLGSVKDPSNCGMPLTPPTSPEQAILGESGGMQSAASHLVSQDGGMITMHSPKRSGKIPPKLHNHMVHRVWK ECILNRTQSKRSQMSTPTLEEEPASNPATWDFVDPTQRVSCSCSRHKLLKRCAVGPNRPPTVSQPGFSAGPSSSSSLPPPASSKHKTAER QEKGDKLQKRPLIPFHHRPSVAEELCMEQDTPGQKLGLAGIDSSLEVSSSRKYDKQMAVPSRNTSKQMNLNPMDSPHSPISPLPPTLSPQ PRGQETESLDPPSVPVNPALYGNGLELQQLSTLDDRTVLVGQRLPLMAEVSETALYCGIRPSNPESSEKWWHSYRLPPSDDAEFRPPELQ GERCDAKMEVNSESTALQRLLAQPNKRFKIWQDKQPQLQPLHFLDPLPLSQQPGDSLGEVNDPYTFEDGDIKYIFTANKKCKQGTEKDSL KKNKSEDGFGTKDVTTPGHSTPVPDGKNAMSIFSSATKTDVRQDNAAGRAGSSSLTQVTDLAPSLHDLDNIFDNSDDDELGAVSPALRSS KMPAVGTEDRPLGKDGRAAVPYPPTVADLQRMFPTPPSLEQHPAFSPVMNYKDGISSETVTALGMMESPMVSMVSTQLTEFKMEVEDGLG SPKPEEIKDFSYVHKVPSFQPFVGSSMFAPLKMLPSHCLLPLKIPDACLFRPSWAIPPKIEQLPMPPAATFIRDGYNNVPSVGSLADPDY LNTPQMNTPVTLNSAAPASNSGAGVLPSPATPRFSVPTPRTPRTPRTPRGGGTASGQGSVKYDSTDQGSPASTPSTTRPLNSVEPATMQP IPEAHSLYVTLILSDSVMNIFKDRNFDSCCICACNMNIKGADVGLYIPDSSNEDQYRCTCGFSAIMNRKLGYNSGLFLEDELDIFGKNSD IGQAAERRLMMCQSTFLPQVEGTKKPQEPPISLLLLLQNQHTQPFASLNFLDYISSNNRQTLPCVSWSYDRVQADNNDYWTECFNALEQG RQYVDNPTGGKVDEALVRSATVHSWPHSNVLDISMLSSQDVVRMLLSLQPFLQDAIQKKRTGRTWENIQHVQGPLTWQQFHKMAGRGTYG SEESPEPLPIPTLLVGYDKDFLTISPFSLPFWERLLLDPYGGHRDVAYIVVCPENEALLEGAKTFFRDLSAVYEMCRLGQHKPICKVLRD GIMRVGKTVAQKLTDELVSEWFNQPWSGEENDNHSRLKLYAQVCRHHLAPYLATLQLDSSLLIPPKYQTPPAAAQGQATPGNAGPLAPNG SAAPPAGSAFNPTSNSSSTNPAASSSASGSSVPPVSSSASAPGISQISTTSSSGFSGSVGGQNPSTGGISADRTQGNIGCGGDTDPGQSS SQPSQDGQESVTERERIGIPTEPDSADSHAHPPAVVIYMVDPFTYAAEEDSTSGNFWLLSLMRCYTEMLDNLPEHMRNSFILQIVPCQYM LQTMKDEQVFYIQYLKSMAFSVYCQCRRPLPTQIHIKSLTGFGPAASIEMTLKNPERPSPIQLYSPPFILAPIKDKQTELGETFGEASQK YNVLFVGYCLSHDQRWLLASCTDLHGELLETCVVNIALPNRSRRSKVSARKIGLQKLWEWCIGIVQMTSLPWRVVIGRLGRLGHGELKDW SILLGECSLQTISKKLKDVCRMCGISAADSPSILSACLVAMEPQGSFVVMPDAVTMGSVFGRSTALNMQSSQLNTPQDASCTHILVFPTS STIQVAPANYPNEDGFSPNNDDMFVDLPFPDDMDNDIGILMTGNLHSSPNSSPVPSPGSPSGIGVGSHFQHSRSQGERLLSREAPEELKQ QPLALGYFVSTAKAENLPQWFWSSCPQAQNQCPLFLKASLHHHISVAQTDELLPARNSQRVPHPLDSKTTSDVLRFVLEQYNALSWLTCN -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for ASB3-MED13L |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for ASB3-MED13L |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for ASB3-MED13L |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | C3714756 | Intellectual Disability | 2 | CTD_human;GENOMICS_ENGLAND | |
| Tgene | C4225208 | MENTAL RETARDATION AND DISTINCTIVE FACIAL FEATURES WITH OR WITHOUT CARDIAC DEFECTS | 2 | CTD_human;GENOMICS_ENGLAND;ORPHANET | |
| Tgene | C0008925 | Cleft Palate | 1 | GENOMICS_ENGLAND | |
| Tgene | C0020796 | Profound Mental Retardation | 1 | CTD_human | |
| Tgene | C0025363 | Mental Retardation, Psychosocial | 1 | CTD_human | |
| Tgene | C0917816 | Mental deficiency | 1 | CTD_human | |
| Tgene | C1535926 | Neurodevelopmental Disorders | 1 | CTD_human | |
| Tgene | C1837341 | Transposition of the Great Arteries, Dextro-Looped 1 | 1 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Copyright 2021-Present -The University of Texas Health Science Center at Houston (UTHealth)
Web File Viewing | Emergency Information |Campus Carry|Site Policies