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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:CEP192-LDLRAD4 (FusionGDB2 ID:HG55125TG753)

Fusion Gene Summary for CEP192-LDLRAD4

check button Fusion gene summary
Fusion gene informationFusion gene name: CEP192-LDLRAD4
Fusion gene ID: hg55125tg753
HgeneTgene
Gene symbol

CEP192

LDLRAD4

Gene ID

55125

753

Gene namecentrosomal protein 192low density lipoprotein receptor class A domain containing 4
SynonymsPPP1R62C18orf1
Cytomap('CEP192')('LDLRAD4')

18p11.21

18p11.21

Type of geneprotein-codingprotein-coding
Descriptioncentrosomal protein of 192 kDa192 kDa centrosomal proteincentrosomal protein 192kDacep192/SPD-2protein phosphatase 1, regulatory subunit 62low-density lipoprotein receptor class A domain-containing protein 4clone 22
Modification date2020031320200320
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000506447, ENST00000325971, 
ENST00000430049, ENST00000540847, 
Fusion gene scores* DoF score11 X 10 X 9=99022 X 20 X 7=3080
# samples 1124
** MAII scorelog2(11/990*10)=-3.16992500144231
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(24/3080*10)=-3.68182403997374
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CEP192 [Title/Abstract] AND LDLRAD4 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCEP192(13019205)-LDLRAD4(13278104), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCEP192

GO:0010923

negative regulation of phosphatase activity

19389623

TgeneLDLRAD4

GO:0010991

negative regulation of SMAD protein complex assembly

24627487



check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BLCATCGA-XF-A8HC-01ACEP192chr18

13019205

+LDLRAD4chr18

13278104

+


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Fusion Gene ORF analysis for CEP192-LDLRAD4

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-5UTRENST00000506447ENST00000359446CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5CDS-5UTRENST00000506447ENST00000361205CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5CDS-5UTRENST00000506447ENST00000399848CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5CDS-intronENST00000506447ENST00000585931CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5CDS-intronENST00000506447ENST00000586765CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5CDS-intronENST00000506447ENST00000587757CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5CDS-intronENST00000506447ENST00000590308CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5CDS-intronENST00000506447ENST00000592991CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5UTR-5UTRENST00000325971ENST00000359446CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5UTR-5UTRENST00000325971ENST00000361205CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5UTR-5UTRENST00000325971ENST00000399848CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5UTR-intronENST00000325971ENST00000585931CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5UTR-intronENST00000325971ENST00000586765CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5UTR-intronENST00000325971ENST00000587757CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5UTR-intronENST00000325971ENST00000590308CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
5UTR-intronENST00000325971ENST00000592991CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-5UTRENST00000430049ENST00000359446CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-5UTRENST00000430049ENST00000361205CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-5UTRENST00000430049ENST00000399848CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-5UTRENST00000540847ENST00000359446CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-5UTRENST00000540847ENST00000361205CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-5UTRENST00000540847ENST00000399848CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-intronENST00000430049ENST00000585931CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-intronENST00000430049ENST00000586765CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-intronENST00000430049ENST00000587757CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-intronENST00000430049ENST00000590308CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-intronENST00000430049ENST00000592991CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-intronENST00000540847ENST00000585931CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-intronENST00000540847ENST00000586765CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-intronENST00000540847ENST00000587757CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-intronENST00000540847ENST00000590308CEP192chr18

13019205

+LDLRAD4chr18

13278104

+
intron-intronENST00000540847ENST00000592991CEP192chr18

13019205

+LDLRAD4chr18

13278104

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for CEP192-LDLRAD4


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
CEP192chr1813019205+LDLRAD4chr1813278101+0.0064631230.9935369
CEP192chr1813019205+LDLRAD4chr1813278101+0.0064631230.9935369


check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for CEP192-LDLRAD4


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:13019205/:13278104)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for CEP192-LDLRAD4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for CEP192-LDLRAD4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for CEP192-LDLRAD4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for CEP192-LDLRAD4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource