![]() |
||||||
|
![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:LRRC16A-SLC17A1 (FusionGDB2 ID:HG55604TG6568) |
Fusion Gene Summary for LRRC16A-SLC17A1 |
![]() |
Fusion gene information | Fusion gene name: LRRC16A-SLC17A1 | Fusion gene ID: hg55604tg6568 | Hgene | Tgene | Gene symbol | LRRC16A | SLC17A1 | Gene ID | 55604 | 6568 |
Gene name | capping protein regulator and myosin 1 linker 1 | solute carrier family 17 member 1 | |
Synonyms | CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 | NAPI-1|NPT-1|NPT1 | |
Cytomap | ('CARMIL1','LRRC16A')('SLC17A1','SLC17A1') 6p22.2 | 6p22.2 | |
Type of gene | protein-coding | protein-coding | |
Description | F-actin-uncapping protein LRRC16ACARMIL homologcapping protein regulator and myosin 1 linker protein 1capping protein, Arp2/3 and myosin-I linker homolog 1capping protein, Arp2/3 and myosin-I linker protein 1capping protein, Arp2/3, and Myosin-I Link | sodium-dependent phosphate transport protein 1Na(+)/PI cotransporter 1na/Pi-4renal Na(+)-dependent phosphate cotransporter 1renal sodium-dependent phosphate transport protein 1renal sodium-phosphate transport protein 1sodium phosphate transporterso | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000377969, ENST00000329474, ENST00000476458, | ||
Fusion gene scores | * DoF score | 7 X 5 X 7=245 | 1 X 1 X 1=1 |
# samples | 8 | 1 | |
** MAII score | log2(8/245*10)=-1.61470984411521 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: LRRC16A [Title/Abstract] AND SLC17A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | LRRC16A(25285137)-SLC17A1(25820143), # samples:2 CARMIL1(25285137)-SLC17A1(25820143), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | LRRC16A-SLC17A1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. LRRC16A-SLC17A1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | LRRC16A | GO:0030335 | positive regulation of cell migration | 19846667 |
Hgene | LRRC16A | GO:0044351 | macropinocytosis | 19846667 |
Hgene | LRRC16A | GO:0051639 | actin filament network formation | 19846667 |
Hgene | LRRC16A | GO:1902745 | positive regulation of lamellipodium organization | 16054028 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
![]() |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
![]() |
![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUAD | TCGA-49-4487-01A | CARMIL1 | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
ChimerDB4 | LUAD | TCGA-49-4487-01A | LRRC16A | chr6 | 25285137 | - | SLC17A1 | chr6 | 25820143 | - |
ChimerDB4 | LUAD | TCGA-49-4487-01A | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
Top |
Fusion Gene ORF analysis for LRRC16A-SLC17A1 |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000377969 | ENST00000244527 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
5UTR-3CDS | ENST00000377969 | ENST00000427328 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
5UTR-3CDS | ENST00000377969 | ENST00000468082 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
5UTR-3CDS | ENST00000377969 | ENST00000476801 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
In-frame | ENST00000329474 | ENST00000244527 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
In-frame | ENST00000329474 | ENST00000427328 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
In-frame | ENST00000329474 | ENST00000468082 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
In-frame | ENST00000329474 | ENST00000476801 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
intron-3CDS | ENST00000476458 | ENST00000244527 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
intron-3CDS | ENST00000476458 | ENST00000427328 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
intron-3CDS | ENST00000476458 | ENST00000468082 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
intron-3CDS | ENST00000476458 | ENST00000476801 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
![]() |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000329474 | LRRC16A | chr6 | 25285137 | + | ENST00000244527 | SLC17A1 | chr6 | 25820143 | - | 2027 | 506 | 368 | 1702 | 444 |
ENST00000329474 | LRRC16A | chr6 | 25285137 | + | ENST00000427328 | SLC17A1 | chr6 | 25820143 | - | 1862 | 506 | 368 | 1540 | 390 |
ENST00000329474 | LRRC16A | chr6 | 25285137 | + | ENST00000476801 | SLC17A1 | chr6 | 25820143 | - | 1905 | 506 | 368 | 1702 | 444 |
ENST00000329474 | LRRC16A | chr6 | 25285137 | + | ENST00000468082 | SLC17A1 | chr6 | 25820143 | - | 1541 | 506 | 368 | 1540 | 391 |
![]() |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000329474 | ENST00000244527 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - | 0.000673651 | 0.99932635 |
ENST00000329474 | ENST00000427328 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - | 0.001032472 | 0.9989675 |
ENST00000329474 | ENST00000476801 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - | 0.001066028 | 0.998934 |
ENST00000329474 | ENST00000468082 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - | 0.001510133 | 0.99848986 |
Top |
Fusion Genomic Features for LRRC16A-SLC17A1 |
![]() |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
![]() |
![]() |
Top |
Fusion Protein Features for LRRC16A-SLC17A1 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr6:25285137/chr6:25820143) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
![]() |
![]() |
Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 119_139 | 69 | 571.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 178_198 | 69 | 571.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 200_220 | 69 | 571.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 257_277 | 69 | 571.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 301_321 | 69 | 571.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 339_359 | 69 | 571.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 365_385 | 69 | 571.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 401_421 | 69 | 571.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 433_453 | 69 | 571.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 81_101 | 69 | 571.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 119_139 | 69 | 516.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 178_198 | 69 | 516.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 200_220 | 69 | 516.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 257_277 | 69 | 516.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 301_321 | 69 | 516.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 339_359 | 69 | 516.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 365_385 | 69 | 516.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 401_421 | 69 | 516.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 433_453 | 69 | 516.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 81_101 | 69 | 516.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 119_139 | 69 | 414.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 178_198 | 69 | 414.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 200_220 | 69 | 414.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 257_277 | 69 | 414.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 301_321 | 69 | 414.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 339_359 | 69 | 414.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 365_385 | 69 | 414.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 401_421 | 69 | 414.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 433_453 | 69 | 414.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 81_101 | 69 | 414.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 119_139 | 69 | 468.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 178_198 | 69 | 468.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 200_220 | 69 | 468.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 257_277 | 69 | 468.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 301_321 | 69 | 468.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 339_359 | 69 | 468.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 365_385 | 69 | 468.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 401_421 | 69 | 468.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 433_453 | 69 | 468.0 | Transmembrane | Helical | |
Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 81_101 | 69 | 468.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 710_734 | 46 | 1372.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 710_734 | 0 | 177.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 1243_1250 | 46 | 1372.0 | Compositional bias | Note=Poly-Ser |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 1243_1250 | 0 | 177.0 | Compositional bias | Note=Poly-Ser |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 1055_1089 | 46 | 1372.0 | Region | Necessary for localization at the cell membrane |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 958_1082 | 46 | 1372.0 | Region | Inhibits capping activity of CAPZA2 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 1055_1089 | 0 | 177.0 | Region | Necessary for localization at the cell membrane |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 958_1082 | 0 | 177.0 | Region | Inhibits capping activity of CAPZA2 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 245_269 | 46 | 1372.0 | Repeat | Note=LRR 1 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 275_298 | 46 | 1372.0 | Repeat | Note=LRR 2 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 304_327 | 46 | 1372.0 | Repeat | Note=LRR 3 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 336_363 | 46 | 1372.0 | Repeat | Note=LRR 4 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 391_418 | 46 | 1372.0 | Repeat | Note=LRR 5 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 423_447 | 46 | 1372.0 | Repeat | Note=LRR 6 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 481_506 | 46 | 1372.0 | Repeat | Note=LRR 7 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 543_566 | 46 | 1372.0 | Repeat | Note=LRR 8 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 570_593 | 46 | 1372.0 | Repeat | Note=LRR 9 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 654_678 | 46 | 1372.0 | Repeat | Note=LRR 10 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 958_981 | 46 | 1372.0 | Repeat | Note=LRR 11 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 245_269 | 0 | 177.0 | Repeat | Note=LRR 1 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 275_298 | 0 | 177.0 | Repeat | Note=LRR 2 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 304_327 | 0 | 177.0 | Repeat | Note=LRR 3 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 336_363 | 0 | 177.0 | Repeat | Note=LRR 4 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 391_418 | 0 | 177.0 | Repeat | Note=LRR 5 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 423_447 | 0 | 177.0 | Repeat | Note=LRR 6 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 481_506 | 0 | 177.0 | Repeat | Note=LRR 7 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 543_566 | 0 | 177.0 | Repeat | Note=LRR 8 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 570_593 | 0 | 177.0 | Repeat | Note=LRR 9 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 654_678 | 0 | 177.0 | Repeat | Note=LRR 10 |
Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 958_981 | 0 | 177.0 | Repeat | Note=LRR 11 |
Top |
Fusion Gene Sequence for LRRC16A-SLC17A1 |
![]() |
>49876_49876_1_LRRC16A-SLC17A1_LRRC16A_chr6_25285137_ENST00000329474_SLC17A1_chr6_25820143_ENST00000244527_length(transcript)=2027nt_BP=506nt TGGGCGGGAGCTACGCCGGCCCAAGCCCCGCCGGGGACCAGCGAGCCGGGAGGAGGAGCAGGCGCCACAGCCGCCCCGCGCCCCGCGCCC GCTTGTAATCCGGTCCGCTCCTTATTCAGCCGCCGGGAACTGCGAGGAGGCGTCATGTAGCAGCAGCAGCAAATCCGCCTCGCATTTGCA ACTCTTTTTTTTTTTTTTGGTGGGGCGGGGGGCGCGCGGCAAAATTCTGTCTCCGCCCCCCCTTTTCTTGCCCACTTCCATTTGCAAGCT GCATCTGCCTCTCTAAAAAAATTGAGGAGTTCGGGGAAGGGCAGGGGGCCATAAATCAGAGTTGGACCTGCAATAACCCCCACACCTACA GGGCAACCATGACCGAGGAGAGCTCTGACGTTCCCAGGGAGTTGATAGAAAGCATAAAGGATGTTATTGGCAGAAAGATAAAAATTTCAG TGAAGAAGAAAGTAAAGTTGGAAGTTAAGGGAGACAAAGTTGAAAACAAAGTGCTGAACCCTATGTATAATTGGAGCCCAGATATCCAGG GAATCATCTTGAGTTCCACCTCCTATGGTGTCATCATCATCCAAGTTCCTGTTGGATACTTCTCTGGAATATATTCTACAAAGAAAATGA TTGGCTTTGCATTATGCCTCAGCTCTGTGTTAAGCCTGCTCATCCCACCAGCAGCTGGAATTGGAGTAGCTTGGGTCGTTGTATGTCGAG CAGTTCAGGGAGCAGCCCAGGGGATAGTTGCAACAGCCCAGTTTGAAATATATGTCAAATGGGCTCCTCCCCTGGAACGAGGCCGACTTA CTTCTATGAGTACATCAGGGTTTTTGCTGGGACCCTTTATTGTCCTACTTGTGACTGGAGTTATCTGTGAATCTCTGGGCTGGCCCATGG TCTTCTATATTTTTGGTGCTTGTGGCTGTGCCGTATGTCTTCTCTGGTTCGTTCTGTTTTATGATGACCCCAAAGACCACCCATGTATAA GCATCAGTGAAAAGGAATACATCACATCCTCCCTGGTCCAGCAGGTCAGTTCAAGTAGACAATCTCTGCCTATCAAGGCTATACTTAAGT CGCTTCCAGTCTGGGCTATTTCCACTGGTAGTTTTACGTTTTTCTGGTCACATAACATCATGACACTATACACTCCAATGTTTATCAACT CCATGCTTCATGTTAATATAAAAGAGAATGGGTTCTTGTCTTCCCTTCCCTATTTGTTTGCCTGGATCTGTGGTAACCTAGCAGGTCAGT TATCAGACTTCTTCCTGACCAGGAATATTCTCAGCGTAATTGCTGTCCGGAAACTCTTCACAGCAGCAGGATTTCTCCTTCCTGCAATCT TTGGTGTCTGCCTGCCTTACCTGAGTTCCACCTTCTACAGCATTGTCATTTTCCTAATACTTGCTGGTGCAACAGGCAGCTTTTGCTTGG GTGGAGTGTTTATAAATGGCTTGGATATTGCTCCCAGATATTTTGGATTTATTAAAGCATGTTCAACTTTAACTGGAATGATAGGAGGAC TAATTGCTTCCACTTTGACTGGATTGATCCTTAAGCAGGATCCGGAATCCGCCTGGTTTAAAACCTTCATCCTGATGGCAGCCATTAATG TGACTGGCCTAATTTTCTACCTTATAGTTGCTACAGCAGAAATTCAGGACTGGGCTAAAGAAAAACAACACACACGTCTCTGAAGTGTGA AACAGAGCACTTGCAGAGCCTGGGACAACCTCCTTATTGAAGGGAAGAGGGACCAGCACATGAGGCTGAGGCTGAGGGGCAGTCACCAGC ACCAGGAAGAAGGTGGTAGGAGGAGTCCTAGGGGCCAGTTTTACCCTCCCACATATCCTGTGTGCATCGTTTTTTAACATGTGTTGTTTG TAACATGTAATATATCTGAATTTTAAATGGGGGTGGTGATTTATCTCAGTCTTCCTCTCTGCATCAGTTGCTTTATAAATGATTGTCAAA >49876_49876_1_LRRC16A-SLC17A1_LRRC16A_chr6_25285137_ENST00000329474_SLC17A1_chr6_25820143_ENST00000244527_length(amino acids)=444AA_BP=20 MTEESSDVPRELIESIKDVIGRKIKISVKKKVKLEVKGDKVENKVLNPMYNWSPDIQGIILSSTSYGVIIIQVPVGYFSGIYSTKKMIGF ALCLSSVLSLLIPPAAGIGVAWVVVCRAVQGAAQGIVATAQFEIYVKWAPPLERGRLTSMSTSGFLLGPFIVLLVTGVICESLGWPMVFY IFGACGCAVCLLWFVLFYDDPKDHPCISISEKEYITSSLVQQVSSSRQSLPIKAILKSLPVWAISTGSFTFFWSHNIMTLYTPMFINSML HVNIKENGFLSSLPYLFAWICGNLAGQLSDFFLTRNILSVIAVRKLFTAAGFLLPAIFGVCLPYLSSTFYSIVIFLILAGATGSFCLGGV -------------------------------------------------------------- >49876_49876_2_LRRC16A-SLC17A1_LRRC16A_chr6_25285137_ENST00000329474_SLC17A1_chr6_25820143_ENST00000427328_length(transcript)=1862nt_BP=506nt TGGGCGGGAGCTACGCCGGCCCAAGCCCCGCCGGGGACCAGCGAGCCGGGAGGAGGAGCAGGCGCCACAGCCGCCCCGCGCCCCGCGCCC GCTTGTAATCCGGTCCGCTCCTTATTCAGCCGCCGGGAACTGCGAGGAGGCGTCATGTAGCAGCAGCAGCAAATCCGCCTCGCATTTGCA ACTCTTTTTTTTTTTTTTGGTGGGGCGGGGGGCGCGCGGCAAAATTCTGTCTCCGCCCCCCCTTTTCTTGCCCACTTCCATTTGCAAGCT GCATCTGCCTCTCTAAAAAAATTGAGGAGTTCGGGGAAGGGCAGGGGGCCATAAATCAGAGTTGGACCTGCAATAACCCCCACACCTACA GGGCAACCATGACCGAGGAGAGCTCTGACGTTCCCAGGGAGTTGATAGAAAGCATAAAGGATGTTATTGGCAGAAAGATAAAAATTTCAG TGAAGAAGAAAGTAAAGTTGGAAGTTAAGGGAGACAAAGTTGAAAACAAAGTGCTGAACCCTATGTATAATTGGAGCCCAGATATCCAGG GAATCATCTTGAGTTCCACCTCCTATGGTGTCATCATCATCCAAGTTCCTGTTGGATACTTCTCTGGAATATATTCTACAAAGAAAATGA TTGGCTTTGCATTATGCCTCAGCTCTGTGTTAAGCCTGCTCATCCCACCAGCAGCTGGAATTGGAGTAGCTTGGGTCGTTGTATGTCGAG CAGTTCAGGGAGCAGCCCAGGGGATAGTTGCAACAGCCCAGTTTGAAATATATGTCAAATGGGCTCCTCCCCTGGAACGAGGCCGACTTA CTTCTATGAGTACATCAGGGTTTTTGCTGGGACCCTTTATTGTCCTACTTGTGACTGGAGTTATCTGTGAATCTCTGGGCTGGCCCATGG TCTTCTATATTTTTGGTGCTTGTGGCTGTGCCGTATGTCTTCTCTGGTTCGTTCTGTTTTATGATGACCCCAAAGACCACCCATGTATAA GCATCAGTGAAAAGGAATACATCACATCCTCCCTGGTCCAGCAGAATGGGTTCTTGTCTTCCCTTCCCTATTTGTTTGCCTGGATCTGTG GTAACCTAGCAGGTCAGTTATCAGACTTCTTCCTGACCAGGAATATTCTCAGCGTAATTGCTGTCCGGAAACTCTTCACAGCAGCAGGAT TTCTCCTTCCTGCAATCTTTGGTGTCTGCCTGCCTTACCTGAGTTCCACCTTCTACAGCATTGTCATTTTCCTAATACTTGCTGGTGCAA CAGGCAGCTTTTGCTTGGGTGGAGTGTTTATAAATGGCTTGGATATTGCTCCCAGATATTTTGGATTTATTAAAGCATGTTCAACTTTAA CTGGAATGATAGGAGGACTAATTGCTTCCACTTTGACTGGATTGATCCTTAAGCAGGATCCGGAATCCGCCTGGTTTAAAACCTTCATCC TGATGGCAGCCATTAATGTGACTGGCCTAATTTTCTACCTTATAGTTGCTACAGCAGAAATTCAGGACTGGGCTAAAGAAAAACAACACA CACGTCTCTGAAGTGTGAAACAGAGCACTTGCAGAGCCTGGGACAACCTCCTTATTGAAGGGAAGAGGGACCAGCACATGAGGCTGAGGC TGAGGGGCAGTCACCAGCACCAGGAAGAAGGTGGTAGGAGGAGTCCTAGGGGCCAGTTTTACCCTCCCACATATCCTGTGTGCATCGTTT TTTAACATGTGTTGTTTGTAACATGTAATATATCTGAATTTTAAATGGGGGTGGTGATTTATCTCAGTCTTCCTCTCTGCATCAGTTGCT >49876_49876_2_LRRC16A-SLC17A1_LRRC16A_chr6_25285137_ENST00000329474_SLC17A1_chr6_25820143_ENST00000427328_length(amino acids)=390AA_BP=20 MTEESSDVPRELIESIKDVIGRKIKISVKKKVKLEVKGDKVENKVLNPMYNWSPDIQGIILSSTSYGVIIIQVPVGYFSGIYSTKKMIGF ALCLSSVLSLLIPPAAGIGVAWVVVCRAVQGAAQGIVATAQFEIYVKWAPPLERGRLTSMSTSGFLLGPFIVLLVTGVICESLGWPMVFY IFGACGCAVCLLWFVLFYDDPKDHPCISISEKEYITSSLVQQNGFLSSLPYLFAWICGNLAGQLSDFFLTRNILSVIAVRKLFTAAGFLL PAIFGVCLPYLSSTFYSIVIFLILAGATGSFCLGGVFINGLDIAPRYFGFIKACSTLTGMIGGLIASTLTGLILKQDPESAWFKTFILMA -------------------------------------------------------------- >49876_49876_3_LRRC16A-SLC17A1_LRRC16A_chr6_25285137_ENST00000329474_SLC17A1_chr6_25820143_ENST00000468082_length(transcript)=1541nt_BP=506nt TGGGCGGGAGCTACGCCGGCCCAAGCCCCGCCGGGGACCAGCGAGCCGGGAGGAGGAGCAGGCGCCACAGCCGCCCCGCGCCCCGCGCCC GCTTGTAATCCGGTCCGCTCCTTATTCAGCCGCCGGGAACTGCGAGGAGGCGTCATGTAGCAGCAGCAGCAAATCCGCCTCGCATTTGCA ACTCTTTTTTTTTTTTTTGGTGGGGCGGGGGGCGCGCGGCAAAATTCTGTCTCCGCCCCCCCTTTTCTTGCCCACTTCCATTTGCAAGCT GCATCTGCCTCTCTAAAAAAATTGAGGAGTTCGGGGAAGGGCAGGGGGCCATAAATCAGAGTTGGACCTGCAATAACCCCCACACCTACA GGGCAACCATGACCGAGGAGAGCTCTGACGTTCCCAGGGAGTTGATAGAAAGCATAAAGGATGTTATTGGCAGAAAGATAAAAATTTCAG TGAAGAAGAAAGTAAAGTTGGAAGTTAAGGGAGACAAAGTTGAAAACAAAGTGCTGAACCCTATGTATAATTGGAGCCCAGATATCCAGG GAATCATCTTGAGTTCCACCTCCTATGGTGTCATCATCATCCAAGTTCCTGTTGGATACTTCTCTGGAATATATTCTACAAAGAAAATGA TTGGCTTTGCATTATGCCTCAGCTCTGTGTTAAGCCTGCTCATCCCACCAGCAGCTGGAATTGGAGTAGCTTGGGTCGTTGTATGTCGAG CAGTTCAGGGAGCAGCCCAGGGGATAGTTGCAACAGCCCAGTTTGAAATATATGTCAAATGGGCTCCTCCCCTGGAACGAGGCCGACTTA CTTCTATGAGTACATCAGGGTTTTTGCTGGGACCCTTTATTGTCCTACTTGTGACTGGAGTTATCTGTGAATCTCTGGGCTGGCCCATGG TCTTCTATATTTTTGGTGCTTGTGGCTGTGCCGTATGTCTTCTCTGGTTCGTTCTGTTTTATGATGACCCCAAAGACCACCCATGTATAA GCATCAGTGAAAAGGAATACATCACATCCTCCCTGGTCCAGCAGAATGGGTTCTTGTCTTCCCTTCCCTATTTGTTTGCCTGGATCTGTG GTAACCTAGCAGGTCAGTTATCAGACTTCTTCCTGACCAGGAATATTCTCAGCGTAATTGCTGTCCGGAAACTCTTCACAGCAGCAGGAT TTCTCCTTCCTGCAATCTTTGGTGTCTGCCTGCCTTACCTGAGTTCCACCTTCTACAGCATTGTCATTTTCCTAATACTTGCTGGTGCAA CAGGCAGCTTTTGCTTGGGTGGAGTGTTTATAAATGGCTTGGATATTGCTCCCAGATATTTTGGATTTATTAAAGCATGTTCAACTTTAA CTGGAATGATAGGAGGACTAATTGCTTCCACTTTGACTGGATTGATCCTTAAGCAGGATCCGGAATCCGCCTGGTTTAAAACCTTCATCC TGATGGCAGCCATTAATGTGACTGGCCTAATTTTCTACCTTATAGTTGCTACAGCAGAAATTCAGGACTGGGCTAAAGAAAAACAACACA >49876_49876_3_LRRC16A-SLC17A1_LRRC16A_chr6_25285137_ENST00000329474_SLC17A1_chr6_25820143_ENST00000468082_length(amino acids)=391AA_BP=20 MTEESSDVPRELIESIKDVIGRKIKISVKKKVKLEVKGDKVENKVLNPMYNWSPDIQGIILSSTSYGVIIIQVPVGYFSGIYSTKKMIGF ALCLSSVLSLLIPPAAGIGVAWVVVCRAVQGAAQGIVATAQFEIYVKWAPPLERGRLTSMSTSGFLLGPFIVLLVTGVICESLGWPMVFY IFGACGCAVCLLWFVLFYDDPKDHPCISISEKEYITSSLVQQNGFLSSLPYLFAWICGNLAGQLSDFFLTRNILSVIAVRKLFTAAGFLL PAIFGVCLPYLSSTFYSIVIFLILAGATGSFCLGGVFINGLDIAPRYFGFIKACSTLTGMIGGLIASTLTGLILKQDPESAWFKTFILMA -------------------------------------------------------------- >49876_49876_4_LRRC16A-SLC17A1_LRRC16A_chr6_25285137_ENST00000329474_SLC17A1_chr6_25820143_ENST00000476801_length(transcript)=1905nt_BP=506nt TGGGCGGGAGCTACGCCGGCCCAAGCCCCGCCGGGGACCAGCGAGCCGGGAGGAGGAGCAGGCGCCACAGCCGCCCCGCGCCCCGCGCCC GCTTGTAATCCGGTCCGCTCCTTATTCAGCCGCCGGGAACTGCGAGGAGGCGTCATGTAGCAGCAGCAGCAAATCCGCCTCGCATTTGCA ACTCTTTTTTTTTTTTTTGGTGGGGCGGGGGGCGCGCGGCAAAATTCTGTCTCCGCCCCCCCTTTTCTTGCCCACTTCCATTTGCAAGCT GCATCTGCCTCTCTAAAAAAATTGAGGAGTTCGGGGAAGGGCAGGGGGCCATAAATCAGAGTTGGACCTGCAATAACCCCCACACCTACA GGGCAACCATGACCGAGGAGAGCTCTGACGTTCCCAGGGAGTTGATAGAAAGCATAAAGGATGTTATTGGCAGAAAGATAAAAATTTCAG TGAAGAAGAAAGTAAAGTTGGAAGTTAAGGGAGACAAAGTTGAAAACAAAGTGCTGAACCCTATGTATAATTGGAGCCCAGATATCCAGG GAATCATCTTGAGTTCCACCTCCTATGGTGTCATCATCATCCAAGTTCCTGTTGGATACTTCTCTGGAATATATTCTACAAAGAAAATGA TTGGCTTTGCATTATGCCTCAGCTCTGTGTTAAGCCTGCTCATCCCACCAGCAGCTGGAATTGGAGTAGCTTGGGTCGTTGTATGTCGAG CAGTTCAGGGAGCAGCCCAGGGGATAGTTGCAACAGCCCAGTTTGAAATATATGTCAAATGGGCTCCTCCCCTGGAACGAGGCCGACTTA CTTCTATGAGTACATCAGGGTTTTTGCTGGGACCCTTTATTGTCCTACTTGTGACTGGAGTTATCTGTGAATCTCTGGGCTGGCCCATGG TCTTCTATATTTTTGGTGCTTGTGGCTGTGCCGTATGTCTTCTCTGGTTCGTTCTGTTTTATGATGACCCCAAAGACCACCCATGTATAA GCATCAGTGAAAAGGAATACATCACATCCTCCCTGGTCCAGCAGGTCAGTTCAAGTAGACAATCTCTGCCTATCAAGGCTATACTTAAGT CGCTTCCAGTCTGGGCTATTTCCACTGGTAGTTTTACGTTTTTCTGGTCACATAACATCATGACACTATACACTCCAATGTTTATCAACT CCATGCTTCATGTTAATATAAAAGAGAATGGGTTCTTGTCTTCCCTTCCCTATTTGTTTGCCTGGATCTGTGGTAACCTAGCAGGTCAGT TATCAGACTTCTTCCTGACCAGGAATATTCTCAGCGTAATTGCTGTCCGGAAACTCTTCACAGCAGCAGGATTTCTCCTTCCTGCAATCT TTGGTGTCTGCCTGCCTTACCTGAGTTCCACCTTCTACAGCATTGTCATTTTCCTAATACTTGCTGGTGCAACAGGCAGCTTTTGCTTGG GTGGAGTGTTTATAAATGGCTTGGATATTGCTCCCAGATATTTTGGATTTATTAAAGCATGTTCAACTTTAACTGGAATGATAGGAGGAC TAATTGCTTCCACTTTGACTGGATTGATCCTTAAGCAGGATCCGGAATCCGCCTGGTTTAAAACCTTCATCCTGATGGCAGCCATTAATG TGACTGGCCTAATTTTCTACCTTATAGTTGCTACAGCAGAAATTCAGGACTGGGCTAAAGAAAAACAACACACACGTCTCTGAAGGTGAG AAGTGATCAGATTAAGGACAATTTTTGAAACTGGGAATGCAGGAGACAGAGGAGATAAGGATGACTCCTCAGACGAGAAGGAATAACGGG TGCAGGTTTGGAGAAGAGGAGACCATGTTAAGCCTGAGAATATTAGACATCCTGAAATGGCTGTGGGACTCTGTGGGGATGCTAAGGCTG >49876_49876_4_LRRC16A-SLC17A1_LRRC16A_chr6_25285137_ENST00000329474_SLC17A1_chr6_25820143_ENST00000476801_length(amino acids)=444AA_BP=20 MTEESSDVPRELIESIKDVIGRKIKISVKKKVKLEVKGDKVENKVLNPMYNWSPDIQGIILSSTSYGVIIIQVPVGYFSGIYSTKKMIGF ALCLSSVLSLLIPPAAGIGVAWVVVCRAVQGAAQGIVATAQFEIYVKWAPPLERGRLTSMSTSGFLLGPFIVLLVTGVICESLGWPMVFY IFGACGCAVCLLWFVLFYDDPKDHPCISISEKEYITSSLVQQVSSSRQSLPIKAILKSLPVWAISTGSFTFFWSHNIMTLYTPMFINSML HVNIKENGFLSSLPYLFAWICGNLAGQLSDFFLTRNILSVIAVRKLFTAAGFLLPAIFGVCLPYLSSTFYSIVIFLILAGATGSFCLGGV -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for LRRC16A-SLC17A1 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for LRRC16A-SLC17A1 |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for LRRC16A-SLC17A1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | C0023893 | Liver Cirrhosis, Experimental | 2 | CTD_human |