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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:MCTP2-CPEB1 (FusionGDB2 ID:HG55784TG64506)

Fusion Gene Summary for MCTP2-CPEB1

check button Fusion gene summary
Fusion gene informationFusion gene name: MCTP2-CPEB1
Fusion gene ID: hg55784tg64506
HgeneTgene
Gene symbol

MCTP2

CPEB1

Gene ID

55784

64506

Gene namemultiple C2 and transmembrane domain containing 2cytoplasmic polyadenylation element binding protein 1
Synonyms-CPE-BP1|CPEB|CPEB-1|h-CPEB|hCPEB-1
Cytomap('MCTP2')('CPEB1')

15q26.2

15q25.2

Type of geneprotein-codingprotein-coding
Descriptionmultiple C2 and transmembrane domain-containing protein 2multiple C2 domains, transmembrane 2multiple C2-domains with two transmembrane regions 2 1cytoplasmic polyadenylation element-binding protein 1CPE-binding protein 1
Modification date2020031320200320
UniProtAcc

Q6DN12

.
Ensembl transtripts involved in fusion geneENST00000331706, ENST00000357742, 
ENST00000451018, ENST00000557742, 
ENST00000449432, ENST00000543482, 
Fusion gene scores* DoF score8 X 8 X 4=2563 X 3 X 2=18
# samples 84
** MAII scorelog2(8/256*10)=-1.67807190511264
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(4/18*10)=1.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: MCTP2 [Title/Abstract] AND CPEB1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointMCTP2(94913409)-CPEB1(83296118), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneCPEB1

GO:0032869

cellular response to insulin stimulus

18752464

TgeneCPEB1

GO:0071456

cellular response to hypoxia

18752464

TgeneCPEB1

GO:1900365

positive regulation of mRNA polyadenylation

28383716



check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4OVTCGA-29-1702-01AMCTP2chr15

94913409

+CPEB1chr15

83296118

-


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Fusion Gene ORF analysis for MCTP2-CPEB1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-5UTRENST00000331706ENST00000450751MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-5UTRENST00000331706ENST00000563800MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-5UTRENST00000331706ENST00000568757MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-5UTRENST00000357742ENST00000450751MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-5UTRENST00000357742ENST00000563800MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-5UTRENST00000357742ENST00000568757MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-5UTRENST00000451018ENST00000450751MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-5UTRENST00000451018ENST00000563800MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-5UTRENST00000451018ENST00000568757MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-5UTRENST00000557742ENST00000450751MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-5UTRENST00000557742ENST00000563800MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-5UTRENST00000557742ENST00000568757MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000331706ENST00000261723MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000331706ENST00000398591MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000331706ENST00000398592MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000331706ENST00000423133MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000331706ENST00000562019MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000331706ENST00000563519MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000331706ENST00000564522MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000331706ENST00000568128MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000357742ENST00000261723MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000357742ENST00000398591MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000357742ENST00000398592MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000357742ENST00000423133MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000357742ENST00000562019MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000357742ENST00000563519MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000357742ENST00000564522MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000357742ENST00000568128MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000451018ENST00000261723MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000451018ENST00000398591MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000451018ENST00000398592MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000451018ENST00000423133MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000451018ENST00000562019MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000451018ENST00000563519MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000451018ENST00000564522MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000451018ENST00000568128MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000557742ENST00000261723MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000557742ENST00000398591MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000557742ENST00000398592MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000557742ENST00000423133MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000557742ENST00000562019MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000557742ENST00000563519MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000557742ENST00000564522MCTP2chr15

94913409

+CPEB1chr15

83296118

-
5CDS-intronENST00000557742ENST00000568128MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-5UTRENST00000449432ENST00000450751MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-5UTRENST00000449432ENST00000563800MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-5UTRENST00000449432ENST00000568757MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-5UTRENST00000543482ENST00000450751MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-5UTRENST00000543482ENST00000563800MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-5UTRENST00000543482ENST00000568757MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000449432ENST00000261723MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000449432ENST00000398591MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000449432ENST00000398592MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000449432ENST00000423133MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000449432ENST00000562019MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000449432ENST00000563519MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000449432ENST00000564522MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000449432ENST00000568128MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000543482ENST00000261723MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000543482ENST00000398591MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000543482ENST00000398592MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000543482ENST00000423133MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000543482ENST00000562019MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000543482ENST00000563519MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000543482ENST00000564522MCTP2chr15

94913409

+CPEB1chr15

83296118

-
intron-intronENST00000543482ENST00000568128MCTP2chr15

94913409

+CPEB1chr15

83296118

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for MCTP2-CPEB1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)


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Fusion Protein Features for MCTP2-CPEB1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:94913409/:83296118)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
MCTP2

Q6DN12

.
FUNCTION: Might play a role in the development of cardiac outflow tract. {ECO:0000269|PubMed:23773997}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for MCTP2-CPEB1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for MCTP2-CPEB1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for MCTP2-CPEB1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for MCTP2-CPEB1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneMCTP2C0036341Schizophrenia1PSYGENET
HgeneMCTP2C0041696Unipolar Depression1PSYGENET
HgeneMCTP2C1269683Major Depressive Disorder1PSYGENET
HgeneMCTP2C2675463Chromosome 15q26-Qter Deletion Syndrome1ORPHANET
TgeneC0023434Chronic Lymphocytic Leukemia1CTD_human