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	Fusion Gene Summary
	Fusion Gene ORF analysis
	Fusion Genomic Features
	Fusion Protein Features
	Fusion Gene Sequence
	Fusion Gene PPI analysis
	Related Drugs
	Related Diseases

Fusion gene:TCF7L2-CASC2 (FusionGDB2 ID:HG6934TG255082)

Fusion Gene Summary for TCF7L2-CASC2

Fusion gene summary

Fusion gene information	Fusion gene name: TCF7L2-CASC2
	Fusion gene ID: hg6934tg255082
		Hgene	Tgene
	Gene symbol	TCF7L2	CASC2
	Gene ID	6934	255082
	Gene name	transcription factor 7 like 2	cancer susceptibility 2
	Synonyms	TCF-4\|TCF4	C10orf5
	Cytomap	('TCF7L2')('CASC2') 10q25.2-q25.3	10q26.11
	Type of gene	protein-coding	ncRNA
	Description	transcription factor 7-like 2HMG box transcription factor 4T-cell factor 4T-cell-specific transcription factor 4hTCF-4transcription factor 7-like 2 (T-cell specific, HMG-box)	cancer susceptibility 2 (non-protein coding)cancer susceptibility candidate 2 (non-protein coding)
	Modification date	20200315	20200313
	UniProtAcc	Q9NQB0	.
	Ensembl transtripts involved in fusion gene	ENST00000349937, ENST00000352065, ENST00000355717, ENST00000355995, ENST00000369395, ENST00000369397, ENST00000534894, ENST00000536810, ENST00000538897, ENST00000543371, ENST00000545257, ENST00000542695, ENST00000369386, ENST00000369389, ENST00000466338,
Fusion gene scores	* DoF score	16 X 11 X 11=1936	4 X 6 X 4=96
	# samples	23	6
	** MAII score	log2(23/1936*10)=-3.07337318633022 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0	log2(6/96*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0
Context	PubMed: TCF7L2 [Title/Abstract] AND CASC2 [Title/Abstract] AND fusion [Title/Abstract]
Most frequent breakpoint	TCF7L2(114799885)-CASC2(119966034), # samples:1 TCF7L2(114799885)-CASC2(119966033), # samples:1
Anticipated loss of major functional domain due to fusion event.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner	Gene	GO ID	GO term	PubMed ID
Hgene	TCF7L2	GO:0000122	negative regulation of transcription by RNA polymerase II	12799378
Hgene	TCF7L2	GO:0006357	regulation of transcription by RNA polymerase II	9727977
Hgene	TCF7L2	GO:0032092	positive regulation of protein binding	12799378
Hgene	TCF7L2	GO:0032350	regulation of hormone metabolic process	15525634
Hgene	TCF7L2	GO:0042593	glucose homeostasis	15525634
Hgene	TCF7L2	GO:0043433	negative regulation of DNA-binding transcription factor activity	12799378
Hgene	TCF7L2	GO:0045444	fat cell differentiation	10937998
Hgene	TCF7L2	GO:0045892	negative regulation of transcription, DNA-templated	12799378\|15525634
Hgene	TCF7L2	GO:0045944	positive regulation of transcription by RNA polymerase II	9065401\|19168596
Hgene	TCF7L2	GO:0048625	myoblast fate commitment	10937998
Tgene	CASC2	GO:0002357	defense response to tumor cell	28621238
Tgene	CASC2	GO:0043280	positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	28621238
Tgene	CASC2	GO:0043409	negative regulation of MAPK cascade	28621238

Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Source	Disease	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
ChimerDB4	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
ChimerDB4	LUSC	TCGA-22-5491	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+

Top

Fusion Gene ORF analysis for TCF7L2-CASC2

Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

ORF	Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
5CDS-3UTR	ENST00000349937	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000349937	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000349937	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000349937	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000349937	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000349937	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000352065	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000352065	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000352065	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000352065	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000352065	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000352065	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000355717	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000355717	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000355717	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000355717	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000355717	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000355717	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000355995	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000355995	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000355995	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000355995	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000355995	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000355995	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000369395	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000369395	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000369395	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000369395	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000369395	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000369395	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000369397	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000369397	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000369397	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000369397	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000369397	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000369397	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000534894	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000534894	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000534894	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000534894	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000534894	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000534894	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000536810	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000536810	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000536810	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000536810	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000536810	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000536810	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000538897	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000538897	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000538897	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000538897	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000538897	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000538897	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000543371	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000543371	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000543371	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000543371	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000543371	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000543371	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000545257	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000545257	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000545257	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000545257	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-3UTR	ENST00000545257	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000545257	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000349937	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000349937	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000349937	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000349937	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000349937	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000349937	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000352065	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000352065	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000352065	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000352065	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000352065	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000352065	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000355717	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000355717	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000355717	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000355717	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000355717	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000355717	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000355995	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000355995	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000355995	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000355995	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000355995	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000355995	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000369395	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000369395	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000369395	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000369395	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000369395	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000369395	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000369397	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000369397	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000369397	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000369397	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000369397	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000369397	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000534894	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000534894	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000534894	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000534894	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000534894	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000534894	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000536810	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000536810	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000536810	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000536810	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000536810	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000536810	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000538897	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000538897	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000538897	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000538897	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000538897	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000538897	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000543371	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000543371	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000543371	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000543371	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000543371	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000543371	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000545257	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000545257	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000545257	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000545257	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5CDS-intron	ENST00000545257	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000545257	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5UTR-3UTR	ENST00000542695	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5UTR-3UTR	ENST00000542695	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5UTR-3UTR	ENST00000542695	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5UTR-3UTR	ENST00000542695	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5UTR-3UTR	ENST00000542695	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5UTR-3UTR	ENST00000542695	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5UTR-intron	ENST00000542695	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5UTR-intron	ENST00000542695	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5UTR-intron	ENST00000542695	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5UTR-intron	ENST00000542695	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
5UTR-intron	ENST00000542695	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5UTR-intron	ENST00000542695	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-3UTR	ENST00000369386	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000369386	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-3UTR	ENST00000369386	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000369386	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-3UTR	ENST00000369386	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000369386	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-3UTR	ENST00000369389	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000369389	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-3UTR	ENST00000369389	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000369389	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-3UTR	ENST00000369389	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000369389	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-3UTR	ENST00000466338	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000466338	ENST00000414722	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-3UTR	ENST00000466338	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000466338	ENST00000435944	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-3UTR	ENST00000466338	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000466338	ENST00000454857	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-intron	ENST00000369386	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000369386	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-intron	ENST00000369386	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000369386	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-intron	ENST00000369386	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000369386	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-intron	ENST00000369389	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000369389	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-intron	ENST00000369389	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000369389	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-intron	ENST00000369389	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000369389	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-intron	ENST00000466338	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000466338	ENST00000426021	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-intron	ENST00000466338	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000466338	ENST00000439517	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+
intron-intron	ENST00000466338	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000466338	ENST00000454781	TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+

ORFfinder result based on the fusion transcript sequence of in-frame fusion genes.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

Seq length
(transcript)

BP loci
(transcript)

Predicted start
(transcript)

Predicted stop
(transcript)

Seq length
(amino acids)

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

No-coding score

Coding score

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Fusion Genomic Features for TCF7L2-CASC2

FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.

Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	1-p	p (fusion gene breakpoint)
TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+	0.00039266	0.9996074
TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+	0.00039266	0.9996074
TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+	0.00039266	0.9996074
TCF7L2	chr10	114799885	+	CASC2	chr10	119966033	+	0.00039266	0.9996074

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for TCF7L2-CASC2

Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:114799885/:119966034)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
TCF7L2 Q9NQB0	.
FUNCTION: Participates in the Wnt signaling pathway and modulates MYC expression by binding to its promoter in a sequence-specific manner. Acts as repressor in the absence of CTNNB1, and as activator in its presence. Activates transcription from promoters with several copies of the Tcf motif 5'-CCTTTGATC-3' in the presence of CTNNB1. TLE1, TLE2, TLE3 and TLE4 repress transactivation mediated by TCF7L2/TCF4 and CTNNB1. Expression of dominant-negative mutants results in cell-cycle arrest in G1. Necessary for the maintenance of the epithelial stem-cell compartment of the small intestine. {ECO:0000269\|PubMed:12408868, ECO:0000269\|PubMed:12727872, ECO:0000269\|PubMed:19443654, ECO:0000269\|PubMed:22699938, ECO:0000269\|PubMed:9727977}.	FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at
download page

* Minus value of BPloci means that the break pointn is located before the CDS.

- In-frame and retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

- In-frame and not-retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

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Fusion Gene Sequence for TCF7L2-CASC2

For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for TCF7L2-CASC2

Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in
ChiPPI page.

Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)

Hgene

Hgene's interactors

Tgene

Tgene's interactors

- Retained PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Still interaction with

- Lost PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

- Retained PPIs, but lost function due to frame-shift fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

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Related Drugs for TCF7L2-CASC2

Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)

Partner

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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Related Diseases for TCF7L2-CASC2

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner	Gene	Disease ID	Disease name	# pubmeds	Source
Hgene	TCF7L2	C0036341	Schizophrenia	4	PSYGENET
Hgene	TCF7L2	C0011860	Diabetes Mellitus, Non-Insulin-Dependent	3	CTD_human
Hgene	TCF7L2	C0009402	Colorectal Carcinoma	2	CTD_human;UNIPROT
Hgene	TCF7L2	C0009404	Colorectal Neoplasms	2	CTD_human
Hgene	TCF7L2	C0001418	Adenocarcinoma	1	CTD_human
Hgene	TCF7L2	C0005586	Bipolar Disorder	1	PSYGENET
Hgene	TCF7L2	C0007102	Malignant tumor of colon	1	CTD_human
Hgene	TCF7L2	C0007193	Cardiomyopathy, Dilated	1	CTD_human
Hgene	TCF7L2	C0009375	Colonic Neoplasms	1	CTD_human
Hgene	TCF7L2	C0010068	Coronary heart disease	1	CTD_human
Hgene	TCF7L2	C0020507	Hyperplasia	1	CTD_human
Hgene	TCF7L2	C0036337	Schizoaffective Disorder	1	PSYGENET
Hgene	TCF7L2	C0087031	Juvenile-Onset Still Disease	1	CTD_human
Hgene	TCF7L2	C0151744	Myocardial Ischemia	1	CTD_human
Hgene	TCF7L2	C0205641	Adenocarcinoma, Basal Cell	1	CTD_human
Hgene	TCF7L2	C0205642	Adenocarcinoma, Oxyphilic	1	CTD_human
Hgene	TCF7L2	C0205643	Carcinoma, Cribriform	1	CTD_human
Hgene	TCF7L2	C0205644	Carcinoma, Granular Cell	1	CTD_human
Hgene	TCF7L2	C0205645	Adenocarcinoma, Tubular	1	CTD_human
Hgene	TCF7L2	C0600519	Ventricular Remodeling	1	CTD_human
Hgene	TCF7L2	C0600520	Left Ventricle Remodeling	1	CTD_human
Hgene	TCF7L2	C1449563	Cardiomyopathy, Familial Idiopathic	1	CTD_human
Hgene	TCF7L2	C1535926	Neurodevelopmental Disorders	1	CTD_human
Hgene	TCF7L2	C2931456	Prostate cancer, familial	1	CTD_human
Hgene	TCF7L2	C3495559	Juvenile arthritis	1	CTD_human
Hgene	TCF7L2	C3714758	Juvenile psoriatic arthritis	1	CTD_human
Hgene	TCF7L2	C4552091	Polyarthritis, Juvenile, Rheumatoid Factor Negative	1	CTD_human
Hgene	TCF7L2	C4704862	Polyarthritis, Juvenile, Rheumatoid Factor Positive	1	CTD_human
Hgene	TCF7L2	C4722327	PROSTATE CANCER, HEREDITARY, 1	1	CTD_human

Fusion Gene Studies in Kim Lab

Fusion gene:TCF7L2-CASC2 (FusionGDB2 ID:HG6934TG255082)

Fusion Gene Summary for TCF7L2-CASC2

Fusion Gene ORF analysis for TCF7L2-CASC2

Fusion Genomic Features for TCF7L2-CASC2

Fusion Protein Features for TCF7L2-CASC2

Fusion Gene Sequence for TCF7L2-CASC2

Fusion Gene PPI Analysis for TCF7L2-CASC2

Related Drugs for TCF7L2-CASC2

Related Diseases for TCF7L2-CASC2

Fusion Gene Studies
in Kim Lab