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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:EHMT1-TMCO3 (FusionGDB2 ID:HG79813TG55002)

Fusion Gene Summary for EHMT1-TMCO3

check button Fusion gene summary
Fusion gene informationFusion gene name: EHMT1-TMCO3
Fusion gene ID: hg79813tg55002
HgeneTgene
Gene symbol

EHMT1

TMCO3

Gene ID

79813

55002

Gene nameeuchromatic histone lysine methyltransferase 1transmembrane and coiled-coil domains 3
SynonymsEHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1DC13orf11
Cytomap('EHMT1')('TMCO3')

9q34.3

13q34

Type of geneprotein-codingprotein-coding
Descriptionhistone-lysine N-methyltransferase EHMT1EHMT1 intronic transcript 1G9a-like protein 1H3-K9-HMTase 5euchromatic histone-lysine N-methyltransferase 1histone H3-K9 methyltransferase 5histone-lysine N-methyltransferase, H3 lysine-9 specific 5lysine N-mtransmembrane and coiled-coil domain-containing protein 3putative LAG1-interacting protein
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000371394, ENST00000460843, 
ENST00000462484, ENST00000334856, 
Fusion gene scores* DoF score15 X 9 X 8=108015 X 14 X 11=2310
# samples 2024
** MAII scorelog2(20/1080*10)=-2.43295940727611
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(24/2310*10)=-3.2667865406949
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: EHMT1 [Title/Abstract] AND TMCO3 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointEHMT1(140513501)-TMCO3(114164552), # samples:1
Anticipated loss of major functional domain due to fusion event.EHMT1-TMCO3 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
EHMT1-TMCO3 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneEHMT1

GO:0006325

chromatin organization

12004135

HgeneEHMT1

GO:0016571

histone methylation

12004135

HgeneEHMT1

GO:0018027

peptidyl-lysine dimethylation

20118233


check buttonFusion gene breakpoints across EHMT1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure
check buttonFusion gene breakpoints across TMCO3 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BLCATCGA-FD-A3SLEHMT1chr9

140513501

+TMCO3chr13

114164552

+


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Fusion Gene ORF analysis for EHMT1-TMCO3

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-3CDSENST00000371394ENST00000375391EHMT1chr9

140513501

+TMCO3chr13

114164552

+
3UTR-3CDSENST00000371394ENST00000434316EHMT1chr9

140513501

+TMCO3chr13

114164552

+
3UTR-3UTRENST00000371394ENST00000474393EHMT1chr9

140513501

+TMCO3chr13

114164552

+
5CDS-3UTRENST00000460843ENST00000474393EHMT1chr9

140513501

+TMCO3chr13

114164552

+
5CDS-3UTRENST00000462484ENST00000474393EHMT1chr9

140513501

+TMCO3chr13

114164552

+
5UTR-3CDSENST00000334856ENST00000375391EHMT1chr9

140513501

+TMCO3chr13

114164552

+
5UTR-3CDSENST00000334856ENST00000434316EHMT1chr9

140513501

+TMCO3chr13

114164552

+
5UTR-3UTRENST00000334856ENST00000474393EHMT1chr9

140513501

+TMCO3chr13

114164552

+
In-frameENST00000460843ENST00000375391EHMT1chr9

140513501

+TMCO3chr13

114164552

+
In-frameENST00000460843ENST00000434316EHMT1chr9

140513501

+TMCO3chr13

114164552

+
In-frameENST00000462484ENST00000375391EHMT1chr9

140513501

+TMCO3chr13

114164552

+
In-frameENST00000462484ENST00000434316EHMT1chr9

140513501

+TMCO3chr13

114164552

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000462484EHMT1chr9140513501+ENST00000434316TMCO3chr13114164552+171158221053343
ENST00000462484EHMT1chr9140513501+ENST00000375391TMCO3chr13114164552+8395810735883
ENST00000460843EHMT1chr9140513501+ENST00000434316TMCO3chr13114164552+170148121043343
ENST00000460843EHMT1chr9140513501+ENST00000375391TMCO3chr13114164552+829489734883

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000462484ENST00000434316EHMT1chr9140513501+TMCO3chr13114164552+0.0033940780.9966059
ENST00000462484ENST00000375391EHMT1chr9140513501+TMCO3chr13114164552+0.68710250.3128975
ENST00000460843ENST00000434316EHMT1chr9140513501+TMCO3chr13114164552+0.0034582910.9965417
ENST00000460843ENST00000375391EHMT1chr9140513501+TMCO3chr13114164552+0.73987390.26012614

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Fusion Genomic Features for EHMT1-TMCO3


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
EHMT1chr9140513501+TMCO3chr13114164552+3.43E-070.99999964
EHMT1chr9140513501+TMCO3chr13114164552+3.43E-070.99999964

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for EHMT1-TMCO3


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr9:140513501/chr13:114164552)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneTMCO3chr9:140513501chr13:114164552ENST0000037539158350_370346415.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST0000037539158416_436346415.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST0000037539158456_476346415.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST0000037539158498_518346415.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST0000037539158554_574346415.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST0000037539158578_598346415.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST0000037539158608_628346415.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST0000037539158640_660346415.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST00000434316513350_370346678.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST00000434316513416_436346678.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST00000434316513456_476346678.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST00000434316513498_518346678.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST00000434316513554_574346678.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST00000434316513578_598346678.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST00000434316513608_628346678.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST00000434316513640_660346678.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+1171292_12950826.0Compositional biasNote=Poly-Ala
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+117406_4090826.0Compositional biasNote=Poly-Glu
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+117442_4490826.0Compositional biasNote=Poly-Arg
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+1271292_129571299.0Compositional biasNote=Poly-Ala
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+127406_40971299.0Compositional biasNote=Poly-Glu
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+127442_44971299.0Compositional biasNote=Poly-Arg
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+1161292_12957809.0Compositional biasNote=Poly-Ala
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+116406_4097809.0Compositional biasNote=Poly-Glu
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+116442_4497809.0Compositional biasNote=Poly-Arg
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+1171060_11230826.0DomainPre-SET
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+1171126_12430826.0DomainSET
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+1271060_112371299.0DomainPre-SET
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+1271126_124371299.0DomainSET
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+1161060_11237809.0DomainPre-SET
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+1161126_12437809.0DomainSET
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+1171136_11380826.0RegionNote=S-adenosyl-L-methionine binding
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+1171200_12010826.0RegionNote=S-adenosyl-L-methionine binding
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+117905_9070826.0RegionNote=Histone H3K9me binding
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+1271136_113871299.0RegionNote=S-adenosyl-L-methionine binding
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+1271200_120171299.0RegionNote=S-adenosyl-L-methionine binding
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+127905_90771299.0RegionNote=Histone H3K9me binding
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+1161136_11387809.0RegionNote=S-adenosyl-L-methionine binding
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+1161200_12017809.0RegionNote=S-adenosyl-L-methionine binding
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+116905_9077809.0RegionNote=Histone H3K9me binding
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+117737_7660826.0RepeatNote=ANK 1
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+117772_8010826.0RepeatNote=ANK 2
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+117805_8340826.0RepeatNote=ANK 3
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+117838_8680826.0RepeatNote=ANK 4
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+117872_9010826.0RepeatNote=ANK 5
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+117905_9340826.0RepeatNote=ANK 6
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+117938_9670826.0RepeatNote=ANK 7
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+117971_10040826.0RepeatNote=ANK 8
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+127737_76671299.0RepeatNote=ANK 1
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+127772_80171299.0RepeatNote=ANK 2
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+127805_83471299.0RepeatNote=ANK 3
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+127838_86871299.0RepeatNote=ANK 4
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+127872_90171299.0RepeatNote=ANK 5
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+127905_93471299.0RepeatNote=ANK 6
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+127938_96771299.0RepeatNote=ANK 7
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+127971_100471299.0RepeatNote=ANK 8
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+116737_7667809.0RepeatNote=ANK 1
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+116772_8017809.0RepeatNote=ANK 2
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+116805_8347809.0RepeatNote=ANK 3
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+116838_8687809.0RepeatNote=ANK 4
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+116872_9017809.0RepeatNote=ANK 5
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+116905_9347809.0RepeatNote=ANK 6
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+116938_9677809.0RepeatNote=ANK 7
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+116971_10047809.0RepeatNote=ANK 8
TgeneTMCO3chr9:140513501chr13:114164552ENST0000037539158124_204346415.0Coiled coilOntology_term=ECO:0000255
TgeneTMCO3chr9:140513501chr13:114164552ENST00000434316513124_204346678.0Coiled coilOntology_term=ECO:0000255
TgeneTMCO3chr9:140513501chr13:114164552ENST0000037539158221_224346415.0Compositional biasNote=Poly-Glu
TgeneTMCO3chr9:140513501chr13:114164552ENST00000434316513221_224346678.0Compositional biasNote=Poly-Glu
TgeneTMCO3chr9:140513501chr13:114164552ENST0000037539158286_306346415.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST0000037539158317_337346415.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST00000434316513286_306346678.0TransmembraneHelical
TgeneTMCO3chr9:140513501chr13:114164552ENST00000434316513317_337346678.0TransmembraneHelical


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Fusion Gene Sequence for EHMT1-TMCO3


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>25591_25591_1_EHMT1-TMCO3_EHMT1_chr9_140513501_ENST00000460843_TMCO3_chr13_114164552_ENST00000375391_length(transcript)=829nt_BP=48nt
GGCGGGGCCACGCTGCGGGCCCGGGCCATGGCCGCCGCCGATGCCGAGGTGTGGAAGATTTCCTTACAAGGGCCGTGTTACATGACACTG
TTAATGATTGCATTTGGCTTGCTGTGGGGGCATCTCTTGCGGATCAAACCCACGCAGAGCGTCTTCATTTCCACGTGTCTGTCCTTGTCA
AGCACACCCCTCGTGTCCAGGTTCCTCATGGGCAGTGCTCGGGGTGACAAAGAAGGCAACAGAACAGCCCTCTAGCAGAGCGTCAGTGCA
GTCGTGTTATCCCGGCTTTTACAGAATATTCTTGTCCTATTTTAGAATTTTCCGGAGTAGTTTATTTGCAGTCTGTTGATTATGTGCAGT
AGACCCGGGACACTGCGTTTTACCGATCACCTTGAATGTGGTGCCTGGATGTGCCTTTTTTTTTTTTCCCTGAAATTATTATTAATTTTC
TATTGTGAGTTCATCAGTTCATAGTTTTTTTAGTAAAGAAGCAAAATTAAAAGGCTTTTAAAAATGTACAACTTCAGAATTATAATCTGT
TAGTCAAATATTTGTTATTAAACATTTCTGTAATATGAAGTTGTAATCCTGGCCGTGAGCTTGGAAGCTTACTTTTGATTCTTAAAGCCT
ATGTTTTCTAAAATGAGACAAATACGGATGTCTATTTGCCTTTTATTGTAACTTTTAAATGAAATAATTTCATGTCAATTTCTATTAGAT
ATATCACTTAAAATATTTGGTTTTAAATCACAAGAATATGTATTCTTTAATAAAGATAATTTATGATCATGGTATAATTAATTGAAATTT

>25591_25591_1_EHMT1-TMCO3_EHMT1_chr9_140513501_ENST00000460843_TMCO3_chr13_114164552_ENST00000375391_length(amino acids)=83AA_BP=

--------------------------------------------------------------
>25591_25591_2_EHMT1-TMCO3_EHMT1_chr9_140513501_ENST00000460843_TMCO3_chr13_114164552_ENST00000434316_length(transcript)=1701nt_BP=48nt
GGCGGGGCCACGCTGCGGGCCCGGGCCATGGCCGCCGCCGATGCCGAGGTGTGGAAGATTTCCTTACAAGGGCCGTGTTACATGACACTG
TTAATGATTGCATTTGGCTTGCTGTGGGGGCATCTCTTGCGGATCAAACCCACGCAGAGCGTCTTCATTTCCACGTGTCTGTCCTTGTCA
AGCACACCCCTCGTGTCCAGGTTCCTCATGGGCAGTGCTCGGGGTGACAAAGAAGGCGACATTGACTACAGCACCGTGCTCCTCGGCATG
CTGGTGACGCAGGACGTGCAGCTCGGGCTCTTCATGGCCGTCATGCCGACTCTCATACAGGCGGGCGCCAGTGCATCTTCTAGCATTGTC
GTGGAAGTTCTCCGAATCCTGGTTTTGATTGGTCAGATTCTTTTTTCACTAGCGGCGGTTTTTCTTTTATGTCTTGTTATAAAGAAGTAT
CTCATTGGACCCTATTATCGGAAGCTGCACATGGAAAGCAAGGGGAACAAAGAAATCCTGATCTTGGGAATATCTGCCTTTATCTTCTTA
ATGTTAACGGTCACGGAGCTGCTGGACGTCTCCATGGAGCTGGGCTGTTTCCTGGCTGGAGCGCTCGTCTCCTCTCAGGGCCCCGTGGTC
ACCGAGGAGATCGCCACCTCCATCGAACCCATCCGCGACTTCCTGGCCATCGTTTTCTTCGCCTCCATAGGGCTCCACGTGTTCCCCACG
TTTGTGGCGTACGAGCTCACGGTGCTGGTGTTCCTCACCTTGTCAGTGGTGGTGATGAAGTTTCTCCTGGCGGCGCTGGTCCTGTCTCTC
ATTCTGCCGAGGAGCAGCCAGTACATCAAGTGGATCGTCTCTGCGGGGCTTGCCCAGGTCAGCGAGTTTTCCTTTGTCCTGGGGAGCCGG
GCGCGAAGAGCGGGCGTCATCTCTCGGGAGGTGTACCTCCTTATACTGAGTGTGACCACGCTCAGCCTCTTGCTCGCCCCGGTGCTGTGG
AGAGCTGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAGCCTCTGATGGCTCGGAGATGATGGACCGTGGAAGGGAAGCGTC
TGTGGGGAGTGAGCGCTTAGATGGCCAGCAGCTGCTCCTTCTGGGAAGCTCGCACCTTGGCAACAGAACAGCCCTCTAGCAGAGCGTCAG
TGCAGTCGTGTTATCCCGGCTTTTACAGAATATTCTTGTCCTATTTTAGAATTTTCCGGAGTAGTTTATTTGCAGTCTGTTGATTATGTG
CAGTAGACCCGGGACACTGCGTTTTACCGATCACCTTGAATGTGGTGCCTGGATGTGCCTTTTTTTTTTTTCCCTGAAATTATTATTAAT
TTTCTATTGTGAGTTCATCAGTTCATAGTTTTTTTAGTAAAGAAGCAAAATTAAAAGGCTTTTAAAAATGTACAACTTCAGAATTATAAT
CTGTTAGTCAAATATTTGTTATTAAACATTTCTGTAATATGAAGTTGTAATCCTGGCCGTGAGCTTGGAAGCTTACTTTTGATTCTTAAA
GCCTATGTTTTCTAAAATGAGACAAATACGGATGTCTATTTGCCTTTTATTGTAACTTTTAAATGAAATAATTTCATGTCAATTTCTATT

>25591_25591_2_EHMT1-TMCO3_EHMT1_chr9_140513501_ENST00000460843_TMCO3_chr13_114164552_ENST00000434316_length(amino acids)=343AA_BP=12
MRARAMAAADAEVWKISLQGPCYMTLLMIAFGLLWGHLLRIKPTQSVFISTCLSLSSTPLVSRFLMGSARGDKEGDIDYSTVLLGMLVTQ
DVQLGLFMAVMPTLIQAGASASSSIVVEVLRILVLIGQILFSLAAVFLLCLVIKKYLIGPYYRKLHMESKGNKEILILGISAFIFLMLTV
TELLDVSMELGCFLAGALVSSQGPVVTEEIATSIEPIRDFLAIVFFASIGLHVFPTFVAYELTVLVFLTLSVVVMKFLLAALVLSLILPR

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>25591_25591_3_EHMT1-TMCO3_EHMT1_chr9_140513501_ENST00000462484_TMCO3_chr13_114164552_ENST00000375391_length(transcript)=839nt_BP=58nt
GCGCGGGAGGGGCGGGGCCACGCTGCGGGCCCGGGCCATGGCCGCCGCCGATGCCGAGGTGTGGAAGATTTCCTTACAAGGGCCGTGTTA
CATGACACTGTTAATGATTGCATTTGGCTTGCTGTGGGGGCATCTCTTGCGGATCAAACCCACGCAGAGCGTCTTCATTTCCACGTGTCT
GTCCTTGTCAAGCACACCCCTCGTGTCCAGGTTCCTCATGGGCAGTGCTCGGGGTGACAAAGAAGGCAACAGAACAGCCCTCTAGCAGAG
CGTCAGTGCAGTCGTGTTATCCCGGCTTTTACAGAATATTCTTGTCCTATTTTAGAATTTTCCGGAGTAGTTTATTTGCAGTCTGTTGAT
TATGTGCAGTAGACCCGGGACACTGCGTTTTACCGATCACCTTGAATGTGGTGCCTGGATGTGCCTTTTTTTTTTTTCCCTGAAATTATT
ATTAATTTTCTATTGTGAGTTCATCAGTTCATAGTTTTTTTAGTAAAGAAGCAAAATTAAAAGGCTTTTAAAAATGTACAACTTCAGAAT
TATAATCTGTTAGTCAAATATTTGTTATTAAACATTTCTGTAATATGAAGTTGTAATCCTGGCCGTGAGCTTGGAAGCTTACTTTTGATT
CTTAAAGCCTATGTTTTCTAAAATGAGACAAATACGGATGTCTATTTGCCTTTTATTGTAACTTTTAAATGAAATAATTTCATGTCAATT
TCTATTAGATATATCACTTAAAATATTTGGTTTTAAATCACAAGAATATGTATTCTTTAATAAAGATAATTTATGATCATGGTATAATTA

>25591_25591_3_EHMT1-TMCO3_EHMT1_chr9_140513501_ENST00000462484_TMCO3_chr13_114164552_ENST00000375391_length(amino acids)=83AA_BP=

--------------------------------------------------------------
>25591_25591_4_EHMT1-TMCO3_EHMT1_chr9_140513501_ENST00000462484_TMCO3_chr13_114164552_ENST00000434316_length(transcript)=1711nt_BP=58nt
GCGCGGGAGGGGCGGGGCCACGCTGCGGGCCCGGGCCATGGCCGCCGCCGATGCCGAGGTGTGGAAGATTTCCTTACAAGGGCCGTGTTA
CATGACACTGTTAATGATTGCATTTGGCTTGCTGTGGGGGCATCTCTTGCGGATCAAACCCACGCAGAGCGTCTTCATTTCCACGTGTCT
GTCCTTGTCAAGCACACCCCTCGTGTCCAGGTTCCTCATGGGCAGTGCTCGGGGTGACAAAGAAGGCGACATTGACTACAGCACCGTGCT
CCTCGGCATGCTGGTGACGCAGGACGTGCAGCTCGGGCTCTTCATGGCCGTCATGCCGACTCTCATACAGGCGGGCGCCAGTGCATCTTC
TAGCATTGTCGTGGAAGTTCTCCGAATCCTGGTTTTGATTGGTCAGATTCTTTTTTCACTAGCGGCGGTTTTTCTTTTATGTCTTGTTAT
AAAGAAGTATCTCATTGGACCCTATTATCGGAAGCTGCACATGGAAAGCAAGGGGAACAAAGAAATCCTGATCTTGGGAATATCTGCCTT
TATCTTCTTAATGTTAACGGTCACGGAGCTGCTGGACGTCTCCATGGAGCTGGGCTGTTTCCTGGCTGGAGCGCTCGTCTCCTCTCAGGG
CCCCGTGGTCACCGAGGAGATCGCCACCTCCATCGAACCCATCCGCGACTTCCTGGCCATCGTTTTCTTCGCCTCCATAGGGCTCCACGT
GTTCCCCACGTTTGTGGCGTACGAGCTCACGGTGCTGGTGTTCCTCACCTTGTCAGTGGTGGTGATGAAGTTTCTCCTGGCGGCGCTGGT
CCTGTCTCTCATTCTGCCGAGGAGCAGCCAGTACATCAAGTGGATCGTCTCTGCGGGGCTTGCCCAGGTCAGCGAGTTTTCCTTTGTCCT
GGGGAGCCGGGCGCGAAGAGCGGGCGTCATCTCTCGGGAGGTGTACCTCCTTATACTGAGTGTGACCACGCTCAGCCTCTTGCTCGCCCC
GGTGCTGTGGAGAGCTGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAGCCTCTGATGGCTCGGAGATGATGGACCGTGGAA
GGGAAGCGTCTGTGGGGAGTGAGCGCTTAGATGGCCAGCAGCTGCTCCTTCTGGGAAGCTCGCACCTTGGCAACAGAACAGCCCTCTAGC
AGAGCGTCAGTGCAGTCGTGTTATCCCGGCTTTTACAGAATATTCTTGTCCTATTTTAGAATTTTCCGGAGTAGTTTATTTGCAGTCTGT
TGATTATGTGCAGTAGACCCGGGACACTGCGTTTTACCGATCACCTTGAATGTGGTGCCTGGATGTGCCTTTTTTTTTTTTCCCTGAAAT
TATTATTAATTTTCTATTGTGAGTTCATCAGTTCATAGTTTTTTTAGTAAAGAAGCAAAATTAAAAGGCTTTTAAAAATGTACAACTTCA
GAATTATAATCTGTTAGTCAAATATTTGTTATTAAACATTTCTGTAATATGAAGTTGTAATCCTGGCCGTGAGCTTGGAAGCTTACTTTT
GATTCTTAAAGCCTATGTTTTCTAAAATGAGACAAATACGGATGTCTATTTGCCTTTTATTGTAACTTTTAAATGAAATAATTTCATGTC
AATTTCTATTAGATATATCACTTAAAATATTTGGTTTTAAATCACAAGAATATGTATTCTTTAATAAAGATAATTTATGATCATGGTATA

>25591_25591_4_EHMT1-TMCO3_EHMT1_chr9_140513501_ENST00000462484_TMCO3_chr13_114164552_ENST00000434316_length(amino acids)=343AA_BP=12
MRARAMAAADAEVWKISLQGPCYMTLLMIAFGLLWGHLLRIKPTQSVFISTCLSLSSTPLVSRFLMGSARGDKEGDIDYSTVLLGMLVTQ
DVQLGLFMAVMPTLIQAGASASSSIVVEVLRILVLIGQILFSLAAVFLLCLVIKKYLIGPYYRKLHMESKGNKEILILGISAFIFLMLTV
TELLDVSMELGCFLAGALVSSQGPVVTEEIATSIEPIRDFLAIVFFASIGLHVFPTFVAYELTVLVFLTLSVVVMKFLLAALVLSLILPR

--------------------------------------------------------------

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Fusion Gene PPI Analysis for EHMT1-TMCO3


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+1171162_11810826.0histone H3
HgeneEHMT1chr9:140513501chr13:114164552ENST00000334856+1171242_12450826.0histone H3
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+1271162_11817.01299.0histone H3
HgeneEHMT1chr9:140513501chr13:114164552ENST00000460843+1271242_12457.01299.0histone H3
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+1161162_11817.0809.0histone H3
HgeneEHMT1chr9:140513501chr13:114164552ENST00000462484+1161242_12457.0809.0histone H3


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for EHMT1-TMCO3


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for EHMT1-TMCO3


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneEHMT1C0795833KLEEFSTRA SYNDROME 111CLINGEN;CTD_human;GENOMICS_ENGLAND;UNIPROT
HgeneEHMT1C0025149Medulloblastoma1CTD_human
HgeneEHMT1C0205833Medullomyoblastoma1CTD_human
HgeneEHMT1C0278510Childhood Medulloblastoma1CTD_human
HgeneEHMT1C0278876Adult Medulloblastoma1CTD_human
HgeneEHMT1C0751291Desmoplastic Medulloblastoma1CTD_human
HgeneEHMT1C1275668Melanotic medulloblastoma1CTD_human