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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:PRPF38A-ABCD3 (FusionGDB2 ID:HG84950TG5825) |
Fusion Gene Summary for PRPF38A-ABCD3 |
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Fusion gene information | Fusion gene name: PRPF38A-ABCD3 | Fusion gene ID: hg84950tg5825 | Hgene | Tgene | Gene symbol | PRPF38A | ABCD3 | Gene ID | 84950 | 5825 |
Gene name | pre-mRNA processing factor 38A | ATP binding cassette subfamily D member 3 | |
Synonyms | PRP38A|Prp38 | ABC43|CBAS5|PMP70|PXMP1|ZWS2 | |
Cytomap | ('PRPF38A')('ABCD3') 1p32.3 | 1p21.3 | |
Type of gene | protein-coding | protein-coding | |
Description | pre-mRNA-splicing factor 38APRP38 pre-mRNA processing factor 38 domain containing A | ATP-binding cassette sub-family D member 370 kDa peroxisomal membrane proteinATP-binding cassette, sub-family D (ALD), member 3Peroxisomal membrane protein-1 (70kD)dJ824O18.1 (ATP-binding cassette, sub-family D (ALD), member 3 (PMP70, PXMP1))peroxiso | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000257181, ENST00000474048, | ||
Fusion gene scores | * DoF score | 4 X 4 X 3=48 | 10 X 6 X 6=360 |
# samples | 4 | 10 | |
** MAII score | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(10/360*10)=-1.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PRPF38A [Title/Abstract] AND ABCD3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | PRPF38A(52871511)-ABCD3(94924163), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | PRPF38A-ABCD3 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PRPF38A-ABCD3 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PRPF38A-ABCD3 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. PRPF38A-ABCD3 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PRPF38A | GO:0000398 | mRNA splicing, via spliceosome | 28781166 |
Tgene | ABCD3 | GO:0007031 | peroxisome organization | 9425230 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | SKCM | TCGA-EB-A551-01A | PRPF38A | chr1 | 52871511 | - | ABCD3 | chr1 | 94924163 | + |
ChimerDB4 | SKCM | TCGA-EB-A551-01A | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
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Fusion Gene ORF analysis for PRPF38A-ABCD3 |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000257181 | ENST00000315713 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
5CDS-intron | ENST00000257181 | ENST00000370214 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
5CDS-intron | ENST00000257181 | ENST00000484213 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
5CDS-intron | ENST00000257181 | ENST00000536817 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
In-frame | ENST00000257181 | ENST00000394233 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
In-frame | ENST00000257181 | ENST00000454898 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
intron-3CDS | ENST00000474048 | ENST00000394233 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
intron-3CDS | ENST00000474048 | ENST00000454898 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
intron-intron | ENST00000474048 | ENST00000315713 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
intron-intron | ENST00000474048 | ENST00000370214 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
intron-intron | ENST00000474048 | ENST00000484213 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
intron-intron | ENST00000474048 | ENST00000536817 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000257181 | PRPF38A | chr1 | 52871511 | + | ENST00000394233 | ABCD3 | chr1 | 94924163 | + | 3550 | 476 | 186 | 2015 | 609 |
ENST00000257181 | PRPF38A | chr1 | 52871511 | + | ENST00000454898 | ABCD3 | chr1 | 94924163 | + | 2497 | 476 | 186 | 2345 | 719 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000257181 | ENST00000394233 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + | 0.000296422 | 0.9997036 |
ENST00000257181 | ENST00000454898 | PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924163 | + | 0.000564659 | 0.99943537 |
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Fusion Genomic Features for PRPF38A-ABCD3 |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924162 | + | 1.90E-05 | 0.99998105 |
PRPF38A | chr1 | 52871511 | + | ABCD3 | chr1 | 94924162 | + | 1.90E-05 | 0.99998105 |
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Fusion Protein Features for PRPF38A-ABCD3 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr1:52871511/chr1:94924163) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | 0 | 9 | 440_659 | 36 | 237.0 | Domain | ABC transporter | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | 0 | 9 | 85_372 | 36 | 237.0 | Domain | ABC transmembrane type-1 | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | 0 | 23 | 440_659 | 36 | 660.0 | Domain | ABC transporter | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | 0 | 23 | 85_372 | 36 | 660.0 | Domain | ABC transmembrane type-1 | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | 0 | 19 | 440_659 | 36 | 550.0 | Domain | ABC transporter | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | 0 | 19 | 85_372 | 36 | 550.0 | Domain | ABC transmembrane type-1 | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | 0 | 9 | 473_480 | 36 | 237.0 | Nucleotide binding | ATP | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | 0 | 23 | 473_480 | 36 | 660.0 | Nucleotide binding | ATP | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | 0 | 19 | 473_480 | 36 | 550.0 | Nucleotide binding | ATP | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | 0 | 9 | 126_146 | 36 | 237.0 | Transmembrane | Helical | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | 0 | 9 | 224_244 | 36 | 237.0 | Transmembrane | Helical | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | 0 | 9 | 313_333 | 36 | 237.0 | Transmembrane | Helical | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | 0 | 9 | 84_104 | 36 | 237.0 | Transmembrane | Helical | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | 0 | 23 | 126_146 | 36 | 660.0 | Transmembrane | Helical | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | 0 | 23 | 224_244 | 36 | 660.0 | Transmembrane | Helical | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | 0 | 23 | 313_333 | 36 | 660.0 | Transmembrane | Helical | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | 0 | 23 | 84_104 | 36 | 660.0 | Transmembrane | Helical | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | 0 | 19 | 126_146 | 36 | 550.0 | Transmembrane | Helical | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | 0 | 19 | 224_244 | 36 | 550.0 | Transmembrane | Helical | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | 0 | 19 | 313_333 | 36 | 550.0 | Transmembrane | Helical | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | 0 | 19 | 84_104 | 36 | 550.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | PRPF38A | chr1:52871511 | chr1:94924163 | ENST00000257181 | + | 2 | 10 | 170_204 | 96 | 313.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | PRPF38A | chr1:52871511 | chr1:94924163 | ENST00000257181 | + | 2 | 10 | 213_291 | 96 | 313.0 | Compositional bias | Note=Arg-rich |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | 0 | 9 | 1_124 | 36 | 237.0 | Region | Note=Targeting to peroxisomes | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | 0 | 23 | 1_124 | 36 | 660.0 | Region | Note=Targeting to peroxisomes | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | 0 | 19 | 1_124 | 36 | 550.0 | Region | Note=Targeting to peroxisomes |
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Fusion Gene Sequence for PRPF38A-ABCD3 |
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>69021_69021_1_PRPF38A-ABCD3_PRPF38A_chr1_52871511_ENST00000257181_ABCD3_chr1_94924163_ENST00000394233_length(transcript)=3550nt_BP=476nt ATTGATTCGATAGGCGACGCGGGGAGCGGAAGCCCTTTACACTACGGTGTTTCCGGCTTCAAGATGGTCGCCTAAGCTGTTTAGTGAAAC TTCTTCCACCTTTCTCCATTCCTCTAGGTGCTTTTTCTGAACCTGGATGTGAGGCATTAAAGGATCCGACGGAAATAGAATTGAAGGCAT TCTAAAATGGCTAACCGTACAGTGAAGGATGCGCACAGCATCCATGGCACCAACCCTCAATATCTGGTGGAGAAGATCATTCGAACGCGA ATCTATGAGTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTACAGCTGAACTTGTAGTCGATAAAGCCATGGAGTTAAGGTTTGTGGGT GGCGTCTATGGTGGCAACATAAAACCAACACCCTTTCTGTGTTTAACCTTGAAGATGCTTCAAATTCAACCCGAGAAGGATATCATTGTA GAGTTTATCAAAAATGAAGATTTCAATAAGAAAAGTGGAAAACCACCATTACAGAACAATGAGAAAGAGGGGAAAAAGGAGCGAGCTGTG GTGGACAAGGTGTTTTTCTCAAGGCTCATACAGATTCTGAAAATCATGGTCCCTAGAACATTTTGTAAAGAGACAGGTTACTTGGTACTT ATTGCTGTTATGCTGGTGTCTCGAACATATTGTGATGTTTGGATGATTCAAAATGGGACACTAATTGAAAGTGGTATCATTGGTCGTAGC AGGAAAGATTTCAAGAGATACTTACTCAACTTCATCGCTGCCATGCCTCTTATCTCTCTGGTTAATAACTTCTTGAAGTATGGGTTAAAT GAGCTTAAACTGTGCTTCCGAGTAAGGCTCACTAAATACCTCTATGAGGAGTATCTTCAAGCTTTCACATATTATAAAATGGGGAATCTG GACAACAGAATAGCTAATCCAGACCAGCTGCTTACACAAGATGTAGAAAAATTTTGTAACAGTGTAGTCGATCTGTATTCAAATCTTAGT AAGCCATTTTTAGACATAGTTTTGTATATCTTTAAGTTAACGAGTGCAATTGGAGCTCAGGGCCCAGCGAGCATGATGGCCTACTTGGTT GTTTCTGGGCTATTCCTAACTCGACTTCGAAGACCCATTGGTAAGATGACAATAACTGAGCAAAAGTATGAAGGAGAATATAGATATGTT AATTCTCGGCTCATCACAAACAGTTTTACTGCTCGGATTACAGAATTAATGCAAGTACTGAAGGATTTAAATCATGGCAAATATGAGCGC ACAATGGTCTCACAACAGGAAAAGGGTATTGAAGGAGTACAAGTCATTCCCTTGATACCTGGTGCTGGAGAAATCATTATTGCAGATAAC ATTATAAAGTTTGATCATGTTCCTTTAGCAACGCCAAATGGAGATGTTTTGATCCGAGACCTTAATTTTGAAGTTCGATCTGGGGCTAAT GTTCTAATTTGTGGTCCAAATGGCTGCGGAAAGAGTTCACTTTTCCGTGTTCTTGGTGAATTATGGCCTCTTTTTGGAGGACGTCTAACT AAACCTGAAAGAGGAAAATTATTTTATGTTCCTCAGAGACCTTACATGACCCTTGGAACACTTCGAGATCAAGTGATATATCCAGATGGA CGAGAAGATCAGAAAAGGAAGGGAATTTCTGACCTAGTACTGAAGGAATACTTAGACAATGTCCAGTTGGGTCATATCCTTGAACGTGAA GGAGGCTGGGACAGTGTTCAGGATTGGATGGACGTACTCAGTGGTGGAGAAAAGCAAAGAATGGCGATGGCAAGATTATTTTATCATAAA CCCCAGTTTGCCATTTTGGATGAATGCACAAGTGCAGTTAGTGTCGACGTGGAAGGCTACATTTATAGTCATTGTCGAAAGGTTGGCATC ACTCTCTTCACTGTGTCTCATAGGAAATCTCTTTGGAAACATCATGAGTACTACCTGCATATGGATGGCAGAGGCAACTATGAATTCAAA CAGATAACAGAAGATACAGTTGAGTTTGGCTCTTAGAGAAATCTGGAGAACTATACCTGCTTCAGTGAAATAATTACAGAATATACTTAG AAAGGCAAAGTACATTGTAAAATAAAGTTGAGCTTAGTTTTTTTTAAAAAAAAAAACAAAGCAACAAATTAACTAGATACAGAATAATGG AGAACAAGTTGTTAAAACATTTAATATTATATAGGATATTGCTAATTGTGTATATGTTGGTTTAATTAATAATATGTACTAAGAATGTCC TTATTCTTGTGGTTAAAAACCTGCCTAAATTAAATTGGGCTTCAATCACTGTAACCTGATTCATCCTGGGATGTAAACCATTCGAAGTCA GCTAATTGGACTTTTATGGCTCTATCTTTTCCTTCAGTGAAGAACCCTATTTAAAACTGGGTCATCATTTGTCCTGTTCTAGCAAGATAG TCTTCAGTTTCATTTTCCTGTGCCCTGTGGTAGTTGGAAACAAATCATAATGTATTATTTAAATGTTTAACATCATTGCATAACAGCGTT TATTATACAGTGGCAGATTTCTTTAGCTGCCACAGTAATACTCATTCCTTGTGTGTGTCTTGGAGTGCATTTGACTCCAGGAAAAGCCAT TTTGGTTTTCCTTAACTAAATGATAAATGTACCCCTCTCAGTCTGCAGTATTGAGTTGTTTAAAGTATATGTGCAGTCTTGCTTACAAGG AGGGGTTACCATGTATCACACCTAATCTTCCCAATGTTTGGGATATTAAAACACAAAGTCCTTAACATGCCAGGCTCAAGGTCTTATAAG AGTTCTAGATTTTTAAGAGAATTAGACAAATTTGTGTGTGTTAGAAGCCCATTCATTAGAAGTGTGGTGGTTATTTGGTATTAAACTCCA AATGAGCCATAGGAAGGCACTACATGAAATAATGCACTGAGTATGCAATGCTATCACTGTCTTTGACTGTGATTTTATGTTTAAAAAGTA TGTTCTAAAATTATTATATATACATGGGTGAATTATGTTTCCGAGGCACTGTTTTATCTCTGTGAATCTTGAATAACTTTTTTATATTTG GGTTATGATGTCAAACGATCCTAAGCGAAGATGATTTCAGTTCATCAAATCATCATTAATGACTTTATGTATTATTTGCACAGGGAGAAT TGAAACTGAGTATAATCAATAAGCTAGATACGAAATCAGTTTCTCAAACTGAGCTTCAGAAAGGGGCATTTTGTACTCTTGTTTTTGCAT AACTGGTTTTGTTTTTTTGCAGAATTAACTATAACAATCACTGGCTACCGAAGTAAACTGATGTACTGAATTCCATAATACATAACATTC AATTTTTACCACTTCTGTTTAGCGAACTTGTATACTTATTTTCTGTTCAGATTAAAAAAAAAAAAAAAAAACTCAGATATCCTATACAAC CTTTGCTTGTTCTTTTTATTCTGGTATCTAAATACTGAGAAGTTCATTTATAATTCAGCCTTGACTTGAAAACATAGATAGTTTAATCTT >69021_69021_1_PRPF38A-ABCD3_PRPF38A_chr1_52871511_ENST00000257181_ABCD3_chr1_94924163_ENST00000394233_length(amino acids)=609AA_BP=97 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEF IKNEDFNKKSGKPPLQNNEKEGKKERAVVDKVFFSRLIQILKIMVPRTFCKETGYLVLIAVMLVSRTYCDVWMIQNGTLIESGIIGRSRK DFKRYLLNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKP FLDIVLYIFKLTSAIGAQGPASMMAYLVVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSFTARITELMQVLKDLNHGKYERTM VSQQEKGIEGVQVIPLIPGAGEIIIADNIIKFDHVPLATPNGDVLIRDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKP ERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQ -------------------------------------------------------------- >69021_69021_2_PRPF38A-ABCD3_PRPF38A_chr1_52871511_ENST00000257181_ABCD3_chr1_94924163_ENST00000454898_length(transcript)=2497nt_BP=476nt ATTGATTCGATAGGCGACGCGGGGAGCGGAAGCCCTTTACACTACGGTGTTTCCGGCTTCAAGATGGTCGCCTAAGCTGTTTAGTGAAAC TTCTTCCACCTTTCTCCATTCCTCTAGGTGCTTTTTCTGAACCTGGATGTGAGGCATTAAAGGATCCGACGGAAATAGAATTGAAGGCAT TCTAAAATGGCTAACCGTACAGTGAAGGATGCGCACAGCATCCATGGCACCAACCCTCAATATCTGGTGGAGAAGATCATTCGAACGCGA ATCTATGAGTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTACAGCTGAACTTGTAGTCGATAAAGCCATGGAGTTAAGGTTTGTGGGT GGCGTCTATGGTGGCAACATAAAACCAACACCCTTTCTGTGTTTAACCTTGAAGATGCTTCAAATTCAACCCGAGAAGGATATCATTGTA GAGTTTATCAAAAATGAAGATTTCAATAAGAAAAGTGGAAAACCACCATTACAGAACAATGAGAAAGAGGGGAAAAAGGAGCGAGCTGTG GTGGACAAGGTGTTTTTCTCAAGGCTCATACAGATTCTGAAAATCATGGTCCCTAGAACATTTTGTAAAGAGACAGGTTACTTGGTACTT ATTGCTGTTATGCTGGTGTCTCGAACATATTGTGATGTTTGGATGATTCAAAATGGGACACTAATTGAAAGTGGTATCATTGGTCGTAGC AGGAAAGATTTCAAGAGATACTTACTCAACTTCATCGCTGCCATGCCTCTTATCTCTCTGGTTAATAACTTCTTGAAGTATGGGTTAAAT GAGCTTAAACTGTGCTTCCGAGTAAGGCTCACTAAATACCTCTATGAGGAGTATCTTCAAGCTTTCACATATTATAAAATGGGGAATCTG GACAACAGAATAGCTAATCCAGACCAGCTGCTTACACAAGATGTAGAAAAATTTTGTAACAGTGTAGTCGATCTGTATTCAAATCTTAGT AAGCCATTTTTAGACATAGTTTTGTATATCTTTAAGTTAACGAGTGCAATTGGAGCTCAGGGCCCAGCGAGCATGATGGCCTACTTGGTT GTTTCTGGGCTATTCCTAACTCGACTTCGAAGACCCATTGGTAAGATGACAATAACTGAGCAAAAGTATGAAGGAGAATATAGATATGTT AATTCTCGGCTCATCACAAACAGTGAAGAAATTGCCTTTTACAATGGGAATAAAAGAGAAAAGCAGACAGTCCACTCAGTCTTCCGAAAA CTGGTGGAACACCTACATAATTTCATTTTGTTTCGGTTTTCAATGGGCTTCATTGATAGTATTATTGCCAAATACCTTGCCACTGTTGTT GGTTACCTAGTTGTCAGTCGCCCTTTCTTAGATTTGTCTCATCCTCGACATCTCAAGAGTACACATTCGGAACTTCTAGAGGATTACTAC CAAAGTGGAAGAATGCTTTTGCGAATGTCTCAAGCTCTGGGTCGAATAGTTTTGGCTGGGCGTGAAATGACTAGATTGGCCGGTTTTACT GCTCGGATTACAGAATTAATGCAAGTACTGAAGGATTTAAATCATGGCAAATATGAGCGCACAATGGTCTCACAACAGGAAAAGGGTATT GAAGGAGTACAAGTCATTCCCTTGATACCTGGTGCTGGAGAAATCATTATTGCAGATAACATTATAAAGTTTGATCATGTTCCTTTAGCA ACGCCAAATGGAGATGTTTTGATCCGAGACCTTAATTTTGAAGTTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGCTGCGGA AAGAGTTCACTTTTCCGTGTTCTTGGTGAATTATGGCCTCTTTTTGGAGGACGTCTAACTAAACCTGAAAGAGGAAAATTATTTTATGTT CCTCAGAGACCTTACATGACCCTTGGAACACTTCGAGATCAAGTGATATATCCAGATGGACGAGAAGATCAGAAAAGGAAGGGAATTTCT GACCTAGTACTGAAGGAATACTTAGACAATGTCCAGTTGGGTCATATCCTTGAACGTGAAGGAGGCTGGGACAGTGTTCAGGATTGGATG GACGTACTCAGTGGTGGAGAAAAGCAAAGAATGGCGATGGCAAGATTATTTTATCATAAACCCCAGTTTGCCATTTTGGATGAATGCACA AGTGCAGTTAGTGTCGACGTGGAAGGCTACATTTATAGTCATTGTCGAAAGGTTGGCATCACTCTCTTCACTGTGTCTCATAGGAAATCT CTTTGGAAACATCATGAGTACTACCTGCATATGGATGGCAGAGGCAACTATGAATTCAAACAGATAACAGAAGATACAGTTGAGTTTGGC TCTTAGAGAAATCTGGAGAACTATACCTGCTTCAGTGAAATAATTACAGAATATACTTAGAAAGGCAAAGTACATTGTAAAATAAAGTTG >69021_69021_2_PRPF38A-ABCD3_PRPF38A_chr1_52871511_ENST00000257181_ABCD3_chr1_94924163_ENST00000454898_length(amino acids)=719AA_BP=97 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEF IKNEDFNKKSGKPPLQNNEKEGKKERAVVDKVFFSRLIQILKIMVPRTFCKETGYLVLIAVMLVSRTYCDVWMIQNGTLIESGIIGRSRK DFKRYLLNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKP FLDIVLYIFKLTSAIGAQGPASMMAYLVVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHSVFRKLV EHLHNFILFRFSMGFIDSIIAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTAR ITELMQVLKDLNHGKYERTMVSQQEKGIEGVQVIPLIPGAGEIIIADNIIKFDHVPLATPNGDVLIRDLNFEVRSGANVLICGPNGCGKS SLFRVLGELWPLFGGRLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLDNVQLGHILEREGGWDSVQDWMDV -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for PRPF38A-ABCD3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000315713 | 0 | 9 | 1_199 | 36.666666666666664 | 237.0 | PEX19 | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000370214 | 0 | 23 | 1_199 | 36.666666666666664 | 660.0 | PEX19 | |
Tgene | ABCD3 | chr1:52871511 | chr1:94924163 | ENST00000394233 | 0 | 19 | 1_199 | 36.666666666666664 | 550.0 | PEX19 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for PRPF38A-ABCD3 |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for PRPF38A-ABCD3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | C0009402 | Colorectal Carcinoma | 1 | CTD_human | |
Tgene | C0009404 | Colorectal Neoplasms | 1 | CTD_human | |
Tgene | C0043459 | Zellweger Syndrome | 1 | CTD_human | |
Tgene | C0751594 | Zellweger-Like Syndrome | 1 | CTD_human | |
Tgene | C3658299 | Zellweger Spectrum | 1 | CTD_human | |
Tgene | C4225390 | BILE ACID SYNTHESIS DEFECT, CONGENITAL, 5 | 1 | CTD_human;GENOMICS_ENGLAND |