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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:FAM83A-PDS5A (FusionGDB2 ID:HG84985TG23244) |
Fusion Gene Summary for FAM83A-PDS5A |
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Fusion gene information | Fusion gene name: FAM83A-PDS5A | Fusion gene ID: hg84985tg23244 | Hgene | Tgene | Gene symbol | FAM83A | PDS5A | Gene ID | 84985 | 23244 |
Gene name | family with sequence similarity 83 member A | PDS5 cohesin associated factor A | |
Synonyms | BJ-TSA-9 | PIG54|SCC-112|SCC112 | |
Cytomap | ('FAM83A')('PDS5A') 8q24.13 | 4p14 | |
Type of gene | protein-coding | protein-coding | |
Description | protein FAM83Atumor antigen BJ-TSA-9tumor-specific gene expressed in prostate protein | sister chromatid cohesion protein PDS5 homolog APDS5, regulator of cohesion maintenance, homolog Acell proliferation-inducing gene 54 proteinsister chromatid cohesion protein 112 | |
Modification date | 20200313 | 20200327 | |
UniProtAcc | . | Q29RF7 | |
Ensembl transtripts involved in fusion gene | ENST00000276699, ENST00000318462, ENST00000518448, ENST00000522648, ENST00000536633, ENST00000546351, ENST00000523819, | ||
Fusion gene scores | * DoF score | 4 X 3 X 3=36 | 21 X 21 X 8=3528 |
# samples | 4 | 26 | |
** MAII score | log2(4/36*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(26/3528*10)=-3.76226703252907 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: FAM83A [Title/Abstract] AND PDS5A [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | FAM83A(124206388)-PDS5A(39827108), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | FAM83A-PDS5A seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | FAM83A | GO:0007173 | epidermal growth factor receptor signaling pathway | 22886303 |
![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | ESCA | TCGA-Q9-A6FU | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
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Fusion Gene ORF analysis for FAM83A-PDS5A |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000276699 | ENST00000503396 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
5CDS-intron | ENST00000318462 | ENST00000503396 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
5CDS-intron | ENST00000518448 | ENST00000503396 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
5CDS-intron | ENST00000522648 | ENST00000503396 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
5CDS-intron | ENST00000536633 | ENST00000503396 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
5CDS-intron | ENST00000546351 | ENST00000503396 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
Frame-shift | ENST00000276699 | ENST00000303538 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
Frame-shift | ENST00000318462 | ENST00000303538 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
Frame-shift | ENST00000518448 | ENST00000303538 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
Frame-shift | ENST00000522648 | ENST00000303538 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
Frame-shift | ENST00000536633 | ENST00000303538 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
Frame-shift | ENST00000546351 | ENST00000303538 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
intron-3CDS | ENST00000523819 | ENST00000303538 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
intron-intron | ENST00000523819 | ENST00000503396 | FAM83A | chr8 | 124206388 | + | PDS5A | chr4 | 39827108 | - |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for FAM83A-PDS5A |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
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Fusion Protein Features for FAM83A-PDS5A |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:124206388/:39827108) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | PDS5A |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Probable regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair. {ECO:0000269|PubMed:15855230, ECO:0000269|PubMed:19907496}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for FAM83A-PDS5A |
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Fusion Gene PPI Analysis for FAM83A-PDS5A |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for FAM83A-PDS5A |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for FAM83A-PDS5A |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | C0033578 | Prostatic Neoplasms | 1 | CTD_human | |
Tgene | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |