![]() |
||||||
|
![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:BOD1-ERGIC1 (FusionGDB2 ID:HG91272TG57222) |
Fusion Gene Summary for BOD1-ERGIC1 |
![]() |
Fusion gene information | Fusion gene name: BOD1-ERGIC1 | Fusion gene ID: hg91272tg57222 | Hgene | Tgene | Gene symbol | BOD1 | ERGIC1 | Gene ID | 91272 | 57222 |
Gene name | biorientation of chromosomes in cell division 1 | endoplasmic reticulum-golgi intermediate compartment 1 | |
Synonyms | FAM44B | AMCN|ERGIC-32|ERGIC32|NET24 | |
Cytomap | ('BOD1')('ERGIC1') 5q35.2 | 5q35.1 | |
Type of gene | protein-coding | protein-coding | |
Description | biorientation of chromosomes in cell division protein 1biorientation defective 1family with sequence similarity 44, member B | endoplasmic reticulum-Golgi intermediate compartment protein 1ER-Golgi intermediate compartment 32 kDa proteinendoplasmic reticulum-golgi intermediate compartment (ERGIC) 1endoplasmic reticulum-golgi intermediate compartment 32 kDa protein | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000285908, ENST00000311086, ENST00000471339, ENST00000480951, | ||
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 10 X 13 X 7=910 |
# samples | 2 | 13 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(13/910*10)=-2.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: BOD1 [Title/Abstract] AND ERGIC1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | BOD1(173040134)-ERGIC1(172315702), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | BOD1-ERGIC1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. BOD1-ERGIC1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | BOD1 | GO:0032515 | negative regulation of phosphoprotein phosphatase activity | 24157919 |
Tgene | ERGIC1 | GO:0006888 | ER to Golgi vesicle-mediated transport | 15308636 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
![]() |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
![]() |
![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-BR-A4PD-01A | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
Top |
Fusion Gene ORF analysis for BOD1-ERGIC1 |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-3UTR | ENST00000285908 | ENST00000519860 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
5CDS-3UTR | ENST00000285908 | ENST00000523291 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
5CDS-3UTR | ENST00000311086 | ENST00000519860 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
5CDS-3UTR | ENST00000311086 | ENST00000523291 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
5CDS-intron | ENST00000285908 | ENST00000326654 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
5CDS-intron | ENST00000311086 | ENST00000326654 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
5UTR-3CDS | ENST00000471339 | ENST00000393784 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
5UTR-3UTR | ENST00000471339 | ENST00000519860 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
5UTR-3UTR | ENST00000471339 | ENST00000523291 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
5UTR-intron | ENST00000471339 | ENST00000326654 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
Frame-shift | ENST00000311086 | ENST00000393784 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
In-frame | ENST00000285908 | ENST00000393784 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
intron-3CDS | ENST00000480951 | ENST00000393784 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
intron-3UTR | ENST00000480951 | ENST00000519860 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
intron-3UTR | ENST00000480951 | ENST00000523291 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
intron-intron | ENST00000480951 | ENST00000326654 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + |
![]() |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000285908 | BOD1 | chr5 | 173040134 | - | ENST00000393784 | ERGIC1 | chr5 | 172315702 | + | 3236 | 514 | 11 | 1366 | 451 |
![]() |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000285908 | ENST00000393784 | BOD1 | chr5 | 173040134 | - | ERGIC1 | chr5 | 172315702 | + | 0.002534573 | 0.9974654 |
Top |
Fusion Genomic Features for BOD1-ERGIC1 |
![]() |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
BOD1 | chr5 | 173040133 | - | ERGIC1 | chr5 | 172315701 | + | 1.36E-07 | 0.9999999 |
BOD1 | chr5 | 173040133 | - | ERGIC1 | chr5 | 172315701 | + | 1.36E-07 | 0.9999999 |
![]() |
![]() |
![]() |
![]() |
Top |
Fusion Protein Features for BOD1-ERGIC1 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr5:173040134/chr5:172315702) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
![]() |
![]() |
Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | BOD1 | chr5:173040134 | chr5:172315702 | ENST00000285908 | - | 2 | 3 | 4_37 | 120 | 130.0 | Compositional bias | Note=Gly-rich |
Hgene | BOD1 | chr5:173040134 | chr5:172315702 | ENST00000311086 | - | 2 | 4 | 4_37 | 120 | 316.0 | Compositional bias | Note=Gly-rich |
Tgene | ERGIC1 | chr5:173040134 | chr5:172315702 | ENST00000326654 | 0 | 3 | 1_26 | 0 | 160.0 | Topological domain | Cytoplasmic | |
Tgene | ERGIC1 | chr5:173040134 | chr5:172315702 | ENST00000326654 | 0 | 3 | 276_290 | 0 | 160.0 | Topological domain | Cytoplasmic | |
Tgene | ERGIC1 | chr5:173040134 | chr5:172315702 | ENST00000326654 | 0 | 3 | 48_254 | 0 | 160.0 | Topological domain | Lumenal | |
Tgene | ERGIC1 | chr5:173040134 | chr5:172315702 | ENST00000393784 | 0 | 10 | 276_290 | 6 | 291.0 | Topological domain | Cytoplasmic | |
Tgene | ERGIC1 | chr5:173040134 | chr5:172315702 | ENST00000393784 | 0 | 10 | 48_254 | 6 | 291.0 | Topological domain | Lumenal | |
Tgene | ERGIC1 | chr5:173040134 | chr5:172315702 | ENST00000326654 | 0 | 3 | 255_275 | 0 | 160.0 | Transmembrane | Helical | |
Tgene | ERGIC1 | chr5:173040134 | chr5:172315702 | ENST00000326654 | 0 | 3 | 27_47 | 0 | 160.0 | Transmembrane | Helical | |
Tgene | ERGIC1 | chr5:173040134 | chr5:172315702 | ENST00000393784 | 0 | 10 | 255_275 | 6 | 291.0 | Transmembrane | Helical | |
Tgene | ERGIC1 | chr5:173040134 | chr5:172315702 | ENST00000393784 | 0 | 10 | 27_47 | 6 | 291.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | ERGIC1 | chr5:173040134 | chr5:172315702 | ENST00000393784 | 0 | 10 | 1_26 | 6 | 291.0 | Topological domain | Cytoplasmic |
Top |
Fusion Gene Sequence for BOD1-ERGIC1 |
![]() |
>10003_10003_1_BOD1-ERGIC1_BOD1_chr5_173040134_ENST00000285908_ERGIC1_chr5_172315702_ENST00000393784_length(transcript)=3236nt_BP=514nt CACCACCGCCCCTGCCGCCATCGCCACCTCCGCCGCTGCCGCCTTGGGGCCCTCCTCCTTCACCGCCCCCTTCACCACCTCTACACGTTC TAGGCCTTCTGTCCTGGAGAAGAAGCTATAGTCGTTCTCCCTTGTGGGCCCGGGGCGCAGCCATGGCGGACGGCGGCGGCGGCGGGGGAA CTGGCGCGGTGGGCGGCGGCGGAACTAGCCAGGCCTCTGCCGGGGCAGCGACTGGCGCTACTGGGGCCAGCGGGGGCGGTGGCCCCATCA ACCCGGCCTCGCTGCCTCCCGGCGACCCGCAGCTCATCGCTCTCATCGTGGAGCAGCTCAAGAGCCGGGGCCTTTTTGACAGCTTCCGCC GGGACTGCCTGGCCGACGTGGACACCAAGCCAGCTTACCAAAACCTGAGGCAGAAAGTGGATAATTTTGTGTCAACACATCTGGACAAGC AGGAATGGAATCCTACGATGAACAAAAACCAGTTGCGAAATGGTCTGAGGCAGAGTGTGGTTCAGTTTGACATCTACAGGAAGGTGCCCA AGGACCTTACGCAGCCAACGTACACCGGGGCCATTATCTCCATCTGCTGCTGCCTCTTCATCCTCTTCCTCTTCCTCTCGGAGCTCACCG GATTTATAACGACAGAAGTTGTGAACGAGCTCTATGTCGATGACCCAGACAAGGACAGCGGTGGCAAGATCGACGTCAGTCTGAACATCA GTTTACCCAATCTGCACTGCGAGTTGGTTGGGCTTGACATTCAGGATGAGATGGGCAGGCACGAAGTGGGCCACATCGACAACTCCATGA AGATCCCGCTGAACAATGGGGCAGGCTGCCGCTTCGAGGGGCAGTTCAGCATCAACAAGGTCCCCGGCAACTTCCACGTGTCCACACACA GTGCCACAGCCCAGCCACAGAACCCAGACATGACGCATGTCATCCACAAGCTCTCCTTTGGGGACACGCTACAGGTCCAGAACATCCACG GAGCTTTCAATGCTCTCGGGGGAGCAGACAGACTCACCTCCAACCCCCTGGCCTCCCACGACTACATCCTGAAGATTGTGCCCACGGTTT ATGAGGACAAGAGTGGCAAGCAGCGGTACTCCTACCAGTACACGGTGGCCAACAAGGAATACGTCGCCTACAGCCACACGGGCCGCATCA TCCCTGCAATCTGGTTCCGCTACGACCTCAGCCCCATCACGGTCAAGTACACAGAGAGACGGCAGCCGCTGTACAGATTCATCACCACGA TCTGTGCCATCATTGGCGGGACCTTCACCGTCGCCGGCATCCTGGACTCATGCATCTTCACAGCCTCTGAGGCCTGGAAGAAGATCCAGC TGGGCAAGATGCATTGACGCCACACCCAGCCTAATGGCCGAGGACCCTGGGCATCGCCAGCCTTGCCTCCAGTGCCCTGTCTCCTTTGGC CCTCAATCTGGTCCCAAATCTGGCTGTGTCCCAAAGGGTGTGTGGGAAGTGGGGGGAAAGTAGAGGATGGCTCGATGTTTTGCAGCTACC TCTTTTCCCCGTGTTTCTTTTTAGACAAATTACACTGCCTGAAGTTGCAGTTCCCCTTTCCCTGGGGAGCCCCAAGAACAGAGTCAGGCA AGGGGTGGGGAGTCCAGGGATCTTGGGGACCCCTCCTAGGAGAGCTGCAGTCTCTTCCCTCAGGGGAACATCCCAGAATGCATATCGATC AGCTCTCAGCCAGGCTTCGACAATCTCGCAGCCCCCACTAGGTGGACACATTAATGATTTGGTTTCTCCCCTGGGCAGCCAACCTGCCCC AGAGGCACCAGACCTGGGCTTTCAGCTTTGGGACCAGGCTGCCCAAAGGTACTCCTTTATACACCCGGCACCTTCCACGAAAGATGGTAC TTCCCAAGCAAGCCCCTATGATTTGTCACTATAGATGGAACCCTGACTTCTGCCCCATCCCTTCCTGCCCAACCTAGAACCCAGGCCTCA AGTCTTTACCCCACCCCTTTCTTGTTCTTCCAAGAAGCAGATGCCCAGTTGCTCAGCAGCAGCGGTAGAGACTTGAATCTGCCCACCAGT CACAAGGCGGGTCACAGATTCCTCTTCCTCTCTTCTCCTCGTTCCTCTGAACCCTCCACCAATGTGCCTCAGCCTGTGTGCTGTGTGGCA ACAGCATTCTGGTTCCCACTGCCAAGATCTCCCACCACTCTGCTGGGATCTGCAGTGGCAGGGAGTGGGGGTTGTGTAAAGGGGAAGTCA TCTTTTGAGATCCAGATAGACATGGTTTGTGCACTTACGTCCAGATGGGAAGCATCCTTCCTGCAACCCTAAAATAATCATGCAGCCTCT CAGACGGACGCCATCGGTCCCAAGGCCTTAGGTGGAGGAAGCAAAGCAGGCCAGGCCTGTCCTGTCCGTGGACCTCTACCTTCTGGACTC CCTACGGGTGCAGAGCACTTGGGTTTCTCTACAGCCATCGTGGCCCACTTGACACTGTGCTCCTCCATCAGCTGGTCACATGCCAACACG TTCCCAGCCCCTGAGGCAGCTCCAGGGTGCCCCACCTGCTCCTGAGGTGGGTCCCTACCCTGCTGCTCCTCTTCATCCTTTCCCTTTTGT CCTGAAAGGGAGGAGCAATGGTCCAGGCATTAATTCCACCCAGGGAATTTTAGCTATGCCCTCATGTCCCAGGGAGAGAGCCACACGCCT GTTTTCCATTTATAGCAAGATTGTTTGCATACTTTTGTAATGAAGGGGAGTGTCCAGTGGAAGGATTTTTAAAATTATCTTATGGATAGC TCAAGTCTCTGCCATTTGTAATTTTTGGCTCTAAGCTCCGATTGGAGACGCTTCTCCTTGTGCATGTGAGTTGACTGATGTTGTGAGTGT AAATGCATTTGGTTATTTCTGGTATCGGTGGCCACTTGGATGGATTTTTTTACATTCTGTTCCCCAGTTACAGGAAGGAGTCCCTTTGGT GTGTGAATATGTGTGCCTGTAGAGGGTGGGGCAGGGTGGGGTGGGGATGGAAATGTGTGGCATGCACATGAGTTGAAATTCTTTTATGCA TTTTTTTGAAGAAAAAAAAAAAAACAACTCTGAGGACATAGGGGATGTCAGTTTCCTATGGAAGAGACACCTCTGACCCGTTATTCTTAT >10003_10003_1_BOD1-ERGIC1_BOD1_chr5_173040134_ENST00000285908_ERGIC1_chr5_172315702_ENST00000393784_length(amino acids)=451AA_BP=168 MPPSPPPPLPPWGPPPSPPPSPPLHVLGLLSWRRSYSRSPLWARGAAMADGGGGGGTGAVGGGGTSQASAGAATGATGASGGGGPINPAS LPPGDPQLIALIVEQLKSRGLFDSFRRDCLADVDTKPAYQNLRQKVDNFVSTHLDKQEWNPTMNKNQLRNGLRQSVVQFDIYRKVPKDLT QPTYTGAIISICCCLFILFLFLSELTGFITTEVVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPL NNGAGCRFEGQFSINKVPGNFHVSTHSATAQPQNPDMTHVIHKLSFGDTLQVQNIHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDK SGKQRYSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGKM -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for BOD1-ERGIC1 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for BOD1-ERGIC1 |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for BOD1-ERGIC1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | C1859721 | ARTHROGRYPOSIS MULTIPLEX CONGENITA, NEUROGENIC TYPE (disorder) | 1 | CTD_human;ORPHANET;UNIPROT |