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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:MGAT5-SP100

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: MGAT5-SP100
FusionPDB ID: 53360
FusionGDB2.0 ID: 53360
HgeneTgene
Gene symbol

MGAT5

SP100

Gene ID

4249

6672

Gene namealpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferaseSP100 nuclear antigen
SynonymsGNT-V|GNT-VA|MGAT5A|glcNAc-T Vlysp100b
Cytomap

2q21.2-q21.3

2q37.1

Type of geneprotein-codingprotein-coding
Descriptionalpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase AN-acetylglucosaminyl-transferase Valpha-mannoside beta-1,6-N-acetylglucosaminyltransferasealpha-mannoside beta-1,6-N-acetylglucosaminyltransferase Vmannoside acetylglucosaminyltrannuclear autoantigen Sp-100SP100-HMG nuclear autoantigennuclear dot-associated Sp100 proteinspeckled 100 kDa
Modification date2020031320200313
UniProtAcc

Q3V5L5

.
Ensembl transtripts involved in fusion geneENST idsENST00000468758, ENST00000281923, 
ENST00000409645, 
ENST00000264052, 
ENST00000340126, ENST00000341950, 
ENST00000409112, ENST00000409341, 
ENST00000409824, ENST00000409897, 
ENST00000427101, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score11 X 12 X 3=3963 X 3 X 2=18
# samples 144
** MAII scorelog2(14/396*10)=-1.50007360313464
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(4/18*10)=1.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context (manual curation of fusion genes in FusionPDB)

PubMed: MGAT5 [Title/Abstract] AND SP100 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)MGAT5(135012215)-SP100(231327150), # samples:1
Anticipated loss of major functional domain due to fusion event.MGAT5-SP100 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
MGAT5-SP100 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
MGAT5-SP100 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
MGAT5-SP100 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
MGAT5-SP100 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
MGAT5-SP100 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
MGAT5-SP100 seems lost the major protein functional domain in Tgene partner, which is a epigenetic factor due to the frame-shifted ORF.
MGAT5-SP100 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
MGAT5-SP100 seems lost the major protein functional domain in Tgene partner, which is a transcription factor due to the frame-shifted ORF.
MGAT5-SP100 seems lost the major protein functional domain in Tgene partner, which is a tumor suppressor due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneMGAT5

GO:0006487

protein N-linked glycosylation

24846175

HgeneMGAT5

GO:0018279

protein N-linked glycosylation via asparagine

10395745|30140003

HgeneMGAT5

GO:0030335

positive regulation of cell migration

24846175

HgeneMGAT5

GO:1903614

negative regulation of protein tyrosine phosphatase activity

24846175

HgeneMGAT5

GO:1904894

positive regulation of STAT cascade

24846175

TgeneSP100

GO:0000122

negative regulation of transcription by RNA polymerase II

15247905

TgeneSP100

GO:0006978

DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator

14647468

TgeneSP100

GO:0034340

response to type I interferon

9230084|15247905

TgeneSP100

GO:0034341

response to interferon-gamma

9230084

TgeneSP100

GO:0043392

negative regulation of DNA binding

15247905

TgeneSP100

GO:0043433

negative regulation of DNA-binding transcription factor activity

15247905

TgeneSP100

GO:0045185

maintenance of protein location

12470659


check buttonFusion gene breakpoints across MGAT5 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across SP100 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4STADTCGA-HU-A4GJ-01AMGAT5chr2

135012215

+SP100chr2

231327150

+


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000409645MGAT5chr2135012215+ENST00000264052SP100chr2231327150+30474932522159635
ENST00000409645MGAT5chr2135012215+ENST00000409112SP100chr2231327150+16874932521586444
ENST00000409645MGAT5chr2135012215+ENST00000340126SP100chr2231327150+24154932522177641
ENST00000409645MGAT5chr2135012215+ENST00000427101SP100chr2231327150+1363493252953233
ENST00000409645MGAT5chr2135012215+ENST00000409824SP100chr2231327150+1340493252962236
ENST00000409645MGAT5chr2135012215+ENST00000409341SP100chr2231327150+1368493252962236
ENST00000409645MGAT5chr2135012215+ENST00000341950SP100chr2231327150+942493252941229
ENST00000409645MGAT5chr2135012215+ENST00000409897SP100chr2231327150+1381493252962236
ENST00000281923MGAT5chr2135012215+ENST00000264052SP100chr2231327150+29403861452052635
ENST00000281923MGAT5chr2135012215+ENST00000409112SP100chr2231327150+15803861451479444
ENST00000281923MGAT5chr2135012215+ENST00000340126SP100chr2231327150+23083861452070641
ENST00000281923MGAT5chr2135012215+ENST00000427101SP100chr2231327150+1256386145846233
ENST00000281923MGAT5chr2135012215+ENST00000409824SP100chr2231327150+1233386145855236
ENST00000281923MGAT5chr2135012215+ENST00000409341SP100chr2231327150+1261386145855236
ENST00000281923MGAT5chr2135012215+ENST00000341950SP100chr2231327150+835386145834230
ENST00000281923MGAT5chr2135012215+ENST00000409897SP100chr2231327150+1274386145855236

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000409645ENST00000264052MGAT5chr2135012215+SP100chr2231327150+0.00098970.9990103
ENST00000409645ENST00000409112MGAT5chr2135012215+SP100chr2231327150+0.0089769280.99102306
ENST00000409645ENST00000340126MGAT5chr2135012215+SP100chr2231327150+0.0035459540.9964541
ENST00000409645ENST00000427101MGAT5chr2135012215+SP100chr2231327150+0.0032963660.9967037
ENST00000409645ENST00000409824MGAT5chr2135012215+SP100chr2231327150+0.0043651320.99563485
ENST00000409645ENST00000409341MGAT5chr2135012215+SP100chr2231327150+0.0041859620.995814
ENST00000409645ENST00000341950MGAT5chr2135012215+SP100chr2231327150+0.0072660830.99273396
ENST00000409645ENST00000409897MGAT5chr2135012215+SP100chr2231327150+0.0040681440.9959319
ENST00000281923ENST00000264052MGAT5chr2135012215+SP100chr2231327150+0.0008523390.99914765
ENST00000281923ENST00000409112MGAT5chr2135012215+SP100chr2231327150+0.0073576120.99264234
ENST00000281923ENST00000340126MGAT5chr2135012215+SP100chr2231327150+0.0033146680.9966853
ENST00000281923ENST00000427101MGAT5chr2135012215+SP100chr2231327150+0.003689840.9963102
ENST00000281923ENST00000409824MGAT5chr2135012215+SP100chr2231327150+0.0051556840.9948443
ENST00000281923ENST00000409341MGAT5chr2135012215+SP100chr2231327150+0.0051139110.9948861
ENST00000281923ENST00000341950MGAT5chr2135012215+SP100chr2231327150+0.0098909410.9901091
ENST00000281923ENST00000409897MGAT5chr2135012215+SP100chr2231327150+0.0051448920.99485505

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>53360_53360_1_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000281923_SP100_chr2_231327150_ENST00000264052_length(amino acids)=635AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR
SKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQASDM
MDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINFKQSE
LPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESHNNTL
VDPCEEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGEKKKKFKDPNAPKRPPLAFFLFCSEYR
PKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEEDEEDEQEEENE

--------------------------------------------------------------

>53360_53360_2_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000281923_SP100_chr2_231327150_ENST00000340126_length(amino acids)=641AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR
SKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQASDM
MDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINFKQSE
LPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESHNNTL
VDPCPENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVEANKNPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEEQLKCEFLLL
KVYCDSKSCFFASEPYYNREGSQGPQKPMWLNKVKTSLNEQMYTRVEGFVQDMRLIFHNHKEFYREDKFTRLGIQVQDIFEKNFRNIFAI

--------------------------------------------------------------

>53360_53360_3_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000281923_SP100_chr2_231327150_ENST00000341950_length(amino acids)=230AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR

--------------------------------------------------------------

>53360_53360_4_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000281923_SP100_chr2_231327150_ENST00000409112_length(amino acids)=444AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR
SKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQASDM
MDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINFKQSE

--------------------------------------------------------------

>53360_53360_5_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000281923_SP100_chr2_231327150_ENST00000409341_length(amino acids)=236AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR

--------------------------------------------------------------

>53360_53360_6_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000281923_SP100_chr2_231327150_ENST00000409824_length(amino acids)=236AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR

--------------------------------------------------------------

>53360_53360_7_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000281923_SP100_chr2_231327150_ENST00000409897_length(amino acids)=236AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR

--------------------------------------------------------------

>53360_53360_8_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000281923_SP100_chr2_231327150_ENST00000427101_length(amino acids)=233AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR

--------------------------------------------------------------

>53360_53360_9_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000409645_SP100_chr2_231327150_ENST00000264052_length(amino acids)=635AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR
SKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQASDM
MDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINFKQSE
LPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESHNNTL
VDPCEEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGEKKKKFKDPNAPKRPPLAFFLFCSEYR
PKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEEDEEDEQEEENE

--------------------------------------------------------------

>53360_53360_10_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000409645_SP100_chr2_231327150_ENST00000340126_length(amino acids)=641AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR
SKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQASDM
MDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINFKQSE
LPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESHNNTL
VDPCPENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVEANKNPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEEQLKCEFLLL
KVYCDSKSCFFASEPYYNREGSQGPQKPMWLNKVKTSLNEQMYTRVEGFVQDMRLIFHNHKEFYREDKFTRLGIQVQDIFEKNFRNIFAI

--------------------------------------------------------------

>53360_53360_11_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000409645_SP100_chr2_231327150_ENST00000341950_length(amino acids)=229AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR

--------------------------------------------------------------

>53360_53360_12_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000409645_SP100_chr2_231327150_ENST00000409112_length(amino acids)=444AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR
SKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQASDM
MDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINFKQSE

--------------------------------------------------------------

>53360_53360_13_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000409645_SP100_chr2_231327150_ENST00000409341_length(amino acids)=236AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR

--------------------------------------------------------------

>53360_53360_14_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000409645_SP100_chr2_231327150_ENST00000409824_length(amino acids)=236AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR

--------------------------------------------------------------

>53360_53360_15_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000409645_SP100_chr2_231327150_ENST00000409897_length(amino acids)=236AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR

--------------------------------------------------------------

>53360_53360_16_MGAT5-SP100_MGAT5_chr2_135012215_ENST00000409645_SP100_chr2_231327150_ENST00000427101_length(amino acids)=233AA_BP=80
MALFTPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYVISSEDSEGS
TDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALR

--------------------------------------------------------------

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:135012215/chr2:231327150)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
MGAT5

Q3V5L5

.
FUNCTION: Glycosyltransferase that acts on alpha-linked mannose of N-glycans and O-mannosyl glycans. Catalyzes the transfer of N-acetylglucosamine (GlcNAc) to the beta 1-6 linkage of the mannose residue of GlcNAc-beta1,2-Man-alpha on both the alpha1,3- and alpha1,6-linked mannose arms in the core structure of N-glycan. Also acts on the GlcNAc-beta1,2-Man-alpha1-Ser/Thr moiety, forming a 2,6-branched structure in brain O-mannosyl glycan. Plays an active role in modulating integrin and laminin-dependent adhesion and migration of neuronal cells via its activity in the O-mannosyl glycan pathway. {ECO:0000269|PubMed:12941944, ECO:0000269|PubMed:14617637, ECO:0000269|PubMed:14623122, ECO:0000269|PubMed:16606368, ECO:0000269|PubMed:16857188, ECO:0000269|PubMed:19846580}.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

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* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneMGAT5chr2:135012215chr2:231327150ENST00000281923+1161_1380.33333333333333742.0Topological domainCytoplasmic
HgeneMGAT5chr2:135012215chr2:231327150ENST00000409645+2171_1380.33333333333333742.0Topological domainCytoplasmic
HgeneMGAT5chr2:135012215chr2:231327150ENST00000281923+11614_3080.33333333333333742.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
HgeneMGAT5chr2:135012215chr2:231327150ENST00000409645+21714_3080.33333333333333742.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
TgeneSP100chr2:135012215chr2:231327150ENST00000264052825759_764324.3333333333333880.0Compositional biasNote=Poly-Lys
TgeneSP100chr2:135012215chr2:231327150ENST00000264052825854_859324.3333333333333880.0Compositional biasNote=Poly-Lys
TgeneSP100chr2:135012215chr2:231327150ENST00000264052825860_868324.3333333333333880.0Compositional biasNote=Poly-Glu
TgeneSP100chr2:135012215chr2:231327150ENST00000340126829759_764324.3333333333333886.0Compositional biasNote=Poly-Lys
TgeneSP100chr2:135012215chr2:231327150ENST00000340126829854_859324.3333333333333886.0Compositional biasNote=Poly-Lys
TgeneSP100chr2:135012215chr2:231327150ENST00000340126829860_868324.3333333333333886.0Compositional biasNote=Poly-Glu
TgeneSP100chr2:135012215chr2:231327150ENST00000409341815759_764324.3333333333333481.0Compositional biasNote=Poly-Lys
TgeneSP100chr2:135012215chr2:231327150ENST00000409341815854_859324.3333333333333481.0Compositional biasNote=Poly-Lys
TgeneSP100chr2:135012215chr2:231327150ENST00000409341815860_868324.3333333333333481.0Compositional biasNote=Poly-Glu
TgeneSP100chr2:135012215chr2:231327150ENST00000409897916759_764289.3333333333333446.0Compositional biasNote=Poly-Lys
TgeneSP100chr2:135012215chr2:231327150ENST00000409897916854_859289.3333333333333446.0Compositional biasNote=Poly-Lys
TgeneSP100chr2:135012215chr2:231327150ENST00000409897916860_868289.3333333333333446.0Compositional biasNote=Poly-Glu
TgeneSP100chr2:135012215chr2:231327150ENST00000427101714759_764299.3333333333333453.0Compositional biasNote=Poly-Lys
TgeneSP100chr2:135012215chr2:231327150ENST00000427101714854_859299.3333333333333453.0Compositional biasNote=Poly-Lys
TgeneSP100chr2:135012215chr2:231327150ENST00000427101714860_868299.3333333333333453.0Compositional biasNote=Poly-Glu
TgeneSP100chr2:135012215chr2:231327150ENST00000264052825677_753324.3333333333333880.0DNA bindingHMG box 1
TgeneSP100chr2:135012215chr2:231327150ENST00000264052825769_837324.3333333333333880.0DNA bindingHMG box 2
TgeneSP100chr2:135012215chr2:231327150ENST00000340126829677_753324.3333333333333886.0DNA bindingHMG box 1
TgeneSP100chr2:135012215chr2:231327150ENST00000340126829769_837324.3333333333333886.0DNA bindingHMG box 2
TgeneSP100chr2:135012215chr2:231327150ENST00000409341815677_753324.3333333333333481.0DNA bindingHMG box 1
TgeneSP100chr2:135012215chr2:231327150ENST00000409341815769_837324.3333333333333481.0DNA bindingHMG box 2
TgeneSP100chr2:135012215chr2:231327150ENST00000409897916677_753289.3333333333333446.0DNA bindingHMG box 1
TgeneSP100chr2:135012215chr2:231327150ENST00000409897916769_837289.3333333333333446.0DNA bindingHMG box 2
TgeneSP100chr2:135012215chr2:231327150ENST00000427101714677_753299.3333333333333453.0DNA bindingHMG box 1
TgeneSP100chr2:135012215chr2:231327150ENST00000427101714769_837299.3333333333333453.0DNA bindingHMG box 2
TgeneSP100chr2:135012215chr2:231327150ENST00000264052825595_676324.3333333333333880.0DomainSAND
TgeneSP100chr2:135012215chr2:231327150ENST00000340126829595_676324.3333333333333886.0DomainSAND
TgeneSP100chr2:135012215chr2:231327150ENST00000409341815595_676324.3333333333333481.0DomainSAND
TgeneSP100chr2:135012215chr2:231327150ENST00000409897916595_676289.3333333333333446.0DomainSAND
TgeneSP100chr2:135012215chr2:231327150ENST00000427101714595_676299.3333333333333453.0DomainSAND
TgeneSP100chr2:135012215chr2:231327150ENST00000264052825536_553324.3333333333333880.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000264052825568_592324.3333333333333880.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000264052825717_734324.3333333333333880.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000340126829536_553324.3333333333333886.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000340126829568_592324.3333333333333886.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000340126829717_734324.3333333333333886.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000409341815536_553324.3333333333333481.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000409341815568_592324.3333333333333481.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000409341815717_734324.3333333333333481.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000409897916536_553289.3333333333333446.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000409897916568_592289.3333333333333446.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000409897916717_734289.3333333333333446.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000427101714536_553299.3333333333333453.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000427101714568_592299.3333333333333453.0MotifNuclear localization signal
TgeneSP100chr2:135012215chr2:231327150ENST00000427101714717_734299.3333333333333453.0MotifNuclear localization signal

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneMGAT5chr2:135012215chr2:231327150ENST00000281923+116213_74180.33333333333333742.0RegionSufficient for catalytic activity
HgeneMGAT5chr2:135012215chr2:231327150ENST00000281923+116264_26980.33333333333333742.0RegionImportant for activity in FGF2 release
HgeneMGAT5chr2:135012215chr2:231327150ENST00000281923+116378_37980.33333333333333742.0RegionSubstrate binding
HgeneMGAT5chr2:135012215chr2:231327150ENST00000409645+217213_74180.33333333333333742.0RegionSufficient for catalytic activity
HgeneMGAT5chr2:135012215chr2:231327150ENST00000409645+217264_26980.33333333333333742.0RegionImportant for activity in FGF2 release
HgeneMGAT5chr2:135012215chr2:231327150ENST00000409645+217378_37980.33333333333333742.0RegionSubstrate binding
HgeneMGAT5chr2:135012215chr2:231327150ENST00000281923+11631_74180.33333333333333742.0Topological domainLumenal
HgeneMGAT5chr2:135012215chr2:231327150ENST00000409645+21731_74180.33333333333333742.0Topological domainLumenal
TgeneSP100chr2:135012215chr2:231327150ENST00000264052825156_164324.3333333333333880.0Compositional biasNote=Poly-Glu
TgeneSP100chr2:135012215chr2:231327150ENST000002640528253_6324.3333333333333880.0Compositional biasNote=Poly-Gly
TgeneSP100chr2:135012215chr2:231327150ENST00000340126829156_164324.3333333333333886.0Compositional biasNote=Poly-Glu
TgeneSP100chr2:135012215chr2:231327150ENST000003401268293_6324.3333333333333886.0Compositional biasNote=Poly-Gly
TgeneSP100chr2:135012215chr2:231327150ENST00000409341815156_164324.3333333333333481.0Compositional biasNote=Poly-Glu
TgeneSP100chr2:135012215chr2:231327150ENST000004093418153_6324.3333333333333481.0Compositional biasNote=Poly-Gly
TgeneSP100chr2:135012215chr2:231327150ENST00000409897916156_164289.3333333333333446.0Compositional biasNote=Poly-Glu
TgeneSP100chr2:135012215chr2:231327150ENST000004098979163_6289.3333333333333446.0Compositional biasNote=Poly-Gly
TgeneSP100chr2:135012215chr2:231327150ENST00000427101714156_164299.3333333333333453.0Compositional biasNote=Poly-Glu
TgeneSP100chr2:135012215chr2:231327150ENST000004271017143_6299.3333333333333453.0Compositional biasNote=Poly-Gly
TgeneSP100chr2:135012215chr2:231327150ENST0000026405282533_149324.3333333333333880.0DomainHSR
TgeneSP100chr2:135012215chr2:231327150ENST0000034012682933_149324.3333333333333886.0DomainHSR
TgeneSP100chr2:135012215chr2:231327150ENST0000040934181533_149324.3333333333333481.0DomainHSR
TgeneSP100chr2:135012215chr2:231327150ENST0000040989791633_149289.3333333333333446.0DomainHSR
TgeneSP100chr2:135012215chr2:231327150ENST0000042710171433_149299.3333333333333453.0DomainHSR
TgeneSP100chr2:135012215chr2:231327150ENST00000264052825165_168324.3333333333333880.0MotifNote=D-box%3B recognition signal for CDC20-mediated degradation
TgeneSP100chr2:135012215chr2:231327150ENST00000264052825284_297324.3333333333333880.0MotifNote=PxVxL motif
TgeneSP100chr2:135012215chr2:231327150ENST00000340126829165_168324.3333333333333886.0MotifNote=D-box%3B recognition signal for CDC20-mediated degradation
TgeneSP100chr2:135012215chr2:231327150ENST00000340126829284_297324.3333333333333886.0MotifNote=PxVxL motif
TgeneSP100chr2:135012215chr2:231327150ENST00000409341815165_168324.3333333333333481.0MotifNote=D-box%3B recognition signal for CDC20-mediated degradation
TgeneSP100chr2:135012215chr2:231327150ENST00000409341815284_297324.3333333333333481.0MotifNote=PxVxL motif
TgeneSP100chr2:135012215chr2:231327150ENST00000409897916165_168289.3333333333333446.0MotifNote=D-box%3B recognition signal for CDC20-mediated degradation
TgeneSP100chr2:135012215chr2:231327150ENST00000409897916284_297289.3333333333333446.0MotifNote=PxVxL motif
TgeneSP100chr2:135012215chr2:231327150ENST00000427101714165_168299.3333333333333453.0MotifNote=D-box%3B recognition signal for CDC20-mediated degradation
TgeneSP100chr2:135012215chr2:231327150ENST00000427101714284_297299.3333333333333453.0MotifNote=PxVxL motif


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
MGAT5
SP100


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs to MGAT5-SP100


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to MGAT5-SP100


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource