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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:NOL10-LAP3

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: NOL10-LAP3
FusionPDB ID: 59521
FusionGDB2.0 ID: 59521
HgeneTgene
Gene symbol

NOL10

LAP3

Gene ID

79954

51056

Gene namenucleolar protein 10leucine aminopeptidase 3
SynonymsPQBP5HEL-S-106|LAP|LAPEP|PEPS
Cytomap

2p25.1

4p15.32

Type of geneprotein-codingprotein-coding
Descriptionnucleolar protein 10H_NH0074G24.1polyglutamine binding protein 5cytosol aminopeptidaseLAP-3epididymis secretory protein Li 106leucyl aminopeptidasepeptidase Sproline aminopeptidaseprolyl aminopeptidase
Modification date2020031320200313
UniProtAcc

Q9BSC4

P28838

Ensembl transtripts involved in fusion geneENST idsENST00000345985, ENST00000381685, 
ENST00000538384, ENST00000542668, 
ENST00000503467, ENST00000226299, 
ENST00000606142, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score7 X 7 X 4=1968 X 7 X 7=392
# samples 88
** MAII scorelog2(8/196*10)=-1.29278174922785
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(8/392*10)=-2.29278174922785
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: NOL10 [Title/Abstract] AND LAP3 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)NOL10(10784445)-LAP3(17583910), # samples:1
Anticipated loss of major functional domain due to fusion event.NOL10-LAP3 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
NOL10-LAP3 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across NOL10 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across LAP3 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4STADTCGA-D7-A4YXNOL10chr2

10784445

-LAP3chr4

17583910

+


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000345985NOL10chr210784445-ENST00000226299LAP3chr417583910+2653987992273724
ENST00000345985NOL10chr210784445-ENST00000606142LAP3chr417583910+2619987992273724
ENST00000381685NOL10chr210784445-ENST00000226299LAP3chr417583910+27981132942418774
ENST00000381685NOL10chr210784445-ENST00000606142LAP3chr417583910+27641132942418774
ENST00000538384NOL10chr210784445-ENST00000226299LAP3chr417583910+272810621022348748
ENST00000538384NOL10chr210784445-ENST00000606142LAP3chr417583910+269410621022348748

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000345985ENST00000226299NOL10chr210784445-LAP3chr417583910+0.0008922560.9991078
ENST00000345985ENST00000606142NOL10chr210784445-LAP3chr417583910+0.0008806070.99911934
ENST00000381685ENST00000226299NOL10chr210784445-LAP3chr417583910+0.0007066440.9992933
ENST00000381685ENST00000606142NOL10chr210784445-LAP3chr417583910+0.0007017060.99929833
ENST00000538384ENST00000226299NOL10chr210784445-LAP3chr417583910+0.000964520.9990355
ENST00000538384ENST00000606142NOL10chr210784445-LAP3chr417583910+0.0009673610.9990326

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>59521_59521_1_NOL10-LAP3_NOL10_chr2_10784445_ENST00000345985_LAP3_chr4_17583910_ENST00000226299_length(amino acids)=724AA_BP=296
MCGAMQVSSLNEVKIYSLSCGKSLPEWLSDRKKRALQKKDVDVRRRIELIQDFEMPTVCTTIKVSKDGQYILATGTYKPRVRCYDTYQLS
LKFERCLDSEVVTFEILSDDYSKIVFLHNDRYIEFHSQSGFYYKTRIPKFGRDFSYHYPSCDLYFVGASSEVYRLNLEQGRYLNPLQTDA
AENNVCDINSVHGLFATGTIEGRVECWDPRTRNRVGLLDCALNSVTADSEINSLPTISALKFNGALTMAVGTTTGQGKIFTSLEPEHDLN
DVCLYPNSGMLLTANETPKMGIYYIPDFPSVVLVGLGKKAAGIDEQENWHEGKENIRAAVAAGCRQIQDLELSSVEVDPCGDAQAAAEGA
VLGLYEYDDLKQKKKMAVSAKLYGSGDQEAWQKGVLFASGQNLARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWIEEQAM
GSFLSVAKGSDEPPVFLEIHYKGSPNANEPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSAIVSAAKLNLPINIIGLAPLC
ENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIET
GDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKGMTGRPTRTLIEFLLRFS

--------------------------------------------------------------

>59521_59521_2_NOL10-LAP3_NOL10_chr2_10784445_ENST00000345985_LAP3_chr4_17583910_ENST00000606142_length(amino acids)=724AA_BP=296
MCGAMQVSSLNEVKIYSLSCGKSLPEWLSDRKKRALQKKDVDVRRRIELIQDFEMPTVCTTIKVSKDGQYILATGTYKPRVRCYDTYQLS
LKFERCLDSEVVTFEILSDDYSKIVFLHNDRYIEFHSQSGFYYKTRIPKFGRDFSYHYPSCDLYFVGASSEVYRLNLEQGRYLNPLQTDA
AENNVCDINSVHGLFATGTIEGRVECWDPRTRNRVGLLDCALNSVTADSEINSLPTISALKFNGALTMAVGTTTGQGKIFTSLEPEHDLN
DVCLYPNSGMLLTANETPKMGIYYIPDFPSVVLVGLGKKAAGIDEQENWHEGKENIRAAVAAGCRQIQDLELSSVEVDPCGDAQAAAEGA
VLGLYEYDDLKQKKKMAVSAKLYGSGDQEAWQKGVLFASGQNLARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWIEEQAM
GSFLSVAKGSDEPPVFLEIHYKGSPNANEPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSAIVSAAKLNLPINIIGLAPLC
ENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIET
GDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKGMTGRPTRTLIEFLLRFS

--------------------------------------------------------------

>59521_59521_3_NOL10-LAP3_NOL10_chr2_10784445_ENST00000381685_LAP3_chr4_17583910_ENST00000226299_length(amino acids)=774AA_BP=346
MCGAMQVSSLNEVKIYSLSCGKSLPEWLSDRKKRALQKKDVDVRRRIELIQDFEMPTVCTTIKVSKDGQYILATGTYKPRVRCYDTYQLS
LKFERCLDSEVVTFEILSDDYSKIVFLHNDRYIEFHSQSGFYYKTRIPKFGRDFSYHYPSCDLYFVGASSEVYRLNLEQGRYLNPLQTDA
AENNVCDINSVHGLFATGTIEGRVECWDPRTRNRVGLLDCALNSVTADSEINSLPTISALKFNGALTMAVGTTTGQVLLYDLRSDKPLLV
KDHQYGLPIKSVHFQDSLDLILSADSRIVKMWNKNSGKIFTSLEPEHDLNDVCLYPNSGMLLTANETPKMGIYYIPDFPSVVLVGLGKKA
AGIDEQENWHEGKENIRAAVAAGCRQIQDLELSSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSAKLYGSGDQEAWQKGVLFASG
QNLARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWIEEQAMGSFLSVAKGSDEPPVFLEIHYKGSPNANEPPLVFVGKGIT
FDSGGISIKASANMDLMRADMGGAATICSAIVSAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADAL
CYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAA

--------------------------------------------------------------

>59521_59521_4_NOL10-LAP3_NOL10_chr2_10784445_ENST00000381685_LAP3_chr4_17583910_ENST00000606142_length(amino acids)=774AA_BP=346
MCGAMQVSSLNEVKIYSLSCGKSLPEWLSDRKKRALQKKDVDVRRRIELIQDFEMPTVCTTIKVSKDGQYILATGTYKPRVRCYDTYQLS
LKFERCLDSEVVTFEILSDDYSKIVFLHNDRYIEFHSQSGFYYKTRIPKFGRDFSYHYPSCDLYFVGASSEVYRLNLEQGRYLNPLQTDA
AENNVCDINSVHGLFATGTIEGRVECWDPRTRNRVGLLDCALNSVTADSEINSLPTISALKFNGALTMAVGTTTGQVLLYDLRSDKPLLV
KDHQYGLPIKSVHFQDSLDLILSADSRIVKMWNKNSGKIFTSLEPEHDLNDVCLYPNSGMLLTANETPKMGIYYIPDFPSVVLVGLGKKA
AGIDEQENWHEGKENIRAAVAAGCRQIQDLELSSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSAKLYGSGDQEAWQKGVLFASG
QNLARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWIEEQAMGSFLSVAKGSDEPPVFLEIHYKGSPNANEPPLVFVGKGIT
FDSGGISIKASANMDLMRADMGGAATICSAIVSAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADAL
CYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAA

--------------------------------------------------------------

>59521_59521_5_NOL10-LAP3_NOL10_chr2_10784445_ENST00000538384_LAP3_chr4_17583910_ENST00000226299_length(amino acids)=748AA_BP=320
MCGAMQVSSLNEVKIYSLSCGKSLPEWLSDRKKRALQKKDVDVRRRIELIQDFEMPTVCTTIKVSKDGQYILATVVTFEILSDDYSKIVF
LHNDRYIEFHSQSGFYYKTRIPKFGRDFSYHYPSCDLYFVGASSEVYRLNLEQGRYLNPLQTDAAENNVCDINSVHGLFATGTIEGRVEC
WDPRTRNRVGLLDCALNSVTADSEINSLPTISALKFNGALTMAVGTTTGQVLLYDLRSDKPLLVKDHQYGLPIKSVHFQDSLDLILSADS
RIVKMWNKNSGKIFTSLEPEHDLNDVCLYPNSGMLLTANETPKMGIYYIPDFPSVVLVGLGKKAAGIDEQENWHEGKENIRAAVAAGCRQ
IQDLELSSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSAKLYGSGDQEAWQKGVLFASGQNLARQLMETPANEMTPTRFAEIIEK
NLKSASSKTEVHIRPKSWIEEQAMGSFLSVAKGSDEPPVFLEIHYKGSPNANEPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAAT
ICSAIVSAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALG
SGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDE

--------------------------------------------------------------

>59521_59521_6_NOL10-LAP3_NOL10_chr2_10784445_ENST00000538384_LAP3_chr4_17583910_ENST00000606142_length(amino acids)=748AA_BP=320
MCGAMQVSSLNEVKIYSLSCGKSLPEWLSDRKKRALQKKDVDVRRRIELIQDFEMPTVCTTIKVSKDGQYILATVVTFEILSDDYSKIVF
LHNDRYIEFHSQSGFYYKTRIPKFGRDFSYHYPSCDLYFVGASSEVYRLNLEQGRYLNPLQTDAAENNVCDINSVHGLFATGTIEGRVEC
WDPRTRNRVGLLDCALNSVTADSEINSLPTISALKFNGALTMAVGTTTGQVLLYDLRSDKPLLVKDHQYGLPIKSVHFQDSLDLILSADS
RIVKMWNKNSGKIFTSLEPEHDLNDVCLYPNSGMLLTANETPKMGIYYIPDFPSVVLVGLGKKAAGIDEQENWHEGKENIRAAVAAGCRQ
IQDLELSSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSAKLYGSGDQEAWQKGVLFASGQNLARQLMETPANEMTPTRFAEIIEK
NLKSASSKTEVHIRPKSWIEEQAMGSFLSVAKGSDEPPVFLEIHYKGSPNANEPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAAT
ICSAIVSAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALG
SGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDE

--------------------------------------------------------------

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:10784445/chr4:17583910)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
NOL10

Q9BSC4

LAP3

P28838

FUNCTION: Cytolosic metallopeptidase that catalyzes the removal of unsubstituted N-terminal hydrophobic amino acids from various peptides. The presence of Zn(2+) ions is essential for the peptidase activity, and the association with other cofactors can modulate the substrate spectificity of the enzyme. For instance, in the presence of Mn(2+), it displays a specific Cys-Gly hydrolyzing activity of Cys-Gly-S-conjugates. Involved in the metabolism of glutathione and in the degradation of glutathione S-conjugates, which may play a role in the control of the cell redox status. {ECO:0000250|UniProtKB:P00727}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneNOL10chr2:10784445chr4:17583910ENST00000345985-1220127_163292.0639.0RepeatNote=WD 3
HgeneNOL10chr2:10784445chr4:17583910ENST00000345985-1220170_205292.0639.0RepeatNote=WD 4
HgeneNOL10chr2:10784445chr4:17583910ENST00000345985-1220219_258292.0639.0RepeatNote=WD 5
HgeneNOL10chr2:10784445chr4:17583910ENST00000345985-122044_82292.0639.0RepeatNote=WD 1
HgeneNOL10chr2:10784445chr4:17583910ENST00000345985-122088_124292.0639.0RepeatNote=WD 2
HgeneNOL10chr2:10784445chr4:17583910ENST00000381685-1321127_163342.0689.0RepeatNote=WD 3
HgeneNOL10chr2:10784445chr4:17583910ENST00000381685-1321170_205342.0689.0RepeatNote=WD 4
HgeneNOL10chr2:10784445chr4:17583910ENST00000381685-1321219_258342.0689.0RepeatNote=WD 5
HgeneNOL10chr2:10784445chr4:17583910ENST00000381685-1321262_300342.0689.0RepeatNote=WD 6
HgeneNOL10chr2:10784445chr4:17583910ENST00000381685-1321304_341342.0689.0RepeatNote=WD 7
HgeneNOL10chr2:10784445chr4:17583910ENST00000381685-132144_82342.0689.0RepeatNote=WD 1
HgeneNOL10chr2:10784445chr4:17583910ENST00000381685-132188_124342.0689.0RepeatNote=WD 2
HgeneNOL10chr2:10784445chr4:17583910ENST00000538384-1220127_163316.0663.0RepeatNote=WD 3
HgeneNOL10chr2:10784445chr4:17583910ENST00000538384-1220170_205316.0663.0RepeatNote=WD 4
HgeneNOL10chr2:10784445chr4:17583910ENST00000538384-1220219_258316.0663.0RepeatNote=WD 5
HgeneNOL10chr2:10784445chr4:17583910ENST00000538384-1220262_300316.0663.0RepeatNote=WD 6
HgeneNOL10chr2:10784445chr4:17583910ENST00000538384-122044_82316.0663.0RepeatNote=WD 1
HgeneNOL10chr2:10784445chr4:17583910ENST00000538384-122088_124316.0663.0RepeatNote=WD 2

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneNOL10chr2:10784445chr4:17583910ENST00000345985-1220423_446292.0639.0Coiled coilOntology_term=ECO:0000255
HgeneNOL10chr2:10784445chr4:17583910ENST00000345985-1220514_589292.0639.0Coiled coilOntology_term=ECO:0000255
HgeneNOL10chr2:10784445chr4:17583910ENST00000345985-1220640_673292.0639.0Coiled coilOntology_term=ECO:0000255
HgeneNOL10chr2:10784445chr4:17583910ENST00000381685-1321423_446342.0689.0Coiled coilOntology_term=ECO:0000255
HgeneNOL10chr2:10784445chr4:17583910ENST00000381685-1321514_589342.0689.0Coiled coilOntology_term=ECO:0000255
HgeneNOL10chr2:10784445chr4:17583910ENST00000381685-1321640_673342.0689.0Coiled coilOntology_term=ECO:0000255
HgeneNOL10chr2:10784445chr4:17583910ENST00000538384-1220423_446316.0663.0Coiled coilOntology_term=ECO:0000255
HgeneNOL10chr2:10784445chr4:17583910ENST00000538384-1220514_589316.0663.0Coiled coilOntology_term=ECO:0000255
HgeneNOL10chr2:10784445chr4:17583910ENST00000538384-1220640_673316.0663.0Coiled coilOntology_term=ECO:0000255
HgeneNOL10chr2:10784445chr4:17583910ENST00000345985-1220262_300292.0639.0RepeatNote=WD 6
HgeneNOL10chr2:10784445chr4:17583910ENST00000345985-1220304_341292.0639.0RepeatNote=WD 7
HgeneNOL10chr2:10784445chr4:17583910ENST00000538384-1220304_341316.0663.0RepeatNote=WD 7


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
NOL10
LAP3


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs to NOL10-LAP3


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to NOL10-LAP3


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource