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Fusion Protein:PDGFB-DGCR2 |
Fusion Protein Summary |
Fusion gene summary |
Fusion partner gene information | Fusion gene name: PDGFB-DGCR2 | FusionPDB ID: 63834 | FusionGDB2.0 ID: 63834 | Hgene | Tgene | Gene symbol | PDGFB | DGCR2 | Gene ID | 5155 | 9993 |
Gene name | platelet derived growth factor subunit B | DiGeorge syndrome critical region gene 2 | |
Synonyms | IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis | DGS-C|IDD|LAN|SEZ-12 | |
Cytomap | 22q13.1 | 22q11.21 | |
Type of gene | protein-coding | protein-coding | |
Description | platelet-derived growth factor subunit BPDGF subunit BPDGF, B chainbecaplerminepididymis secretory sperm binding proteinplatelet-derived growth factor 2platelet-derived growth factor B chainplatelet-derived growth factor beta polypeptide (simian sa | integral membrane protein DGCR2/IDDDiGeorge syndrome critical region protein 2integral membrane protein deleted in DiGeorge syndrome | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | P01127 | P98153 | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000331163, ENST00000381551, | ENST00000263196, ENST00000473832, ENST00000537045, ENST00000545799, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 4 X 5 X 3=60 | 10 X 10 X 5=500 |
# samples | 5 | 11 | |
** MAII score | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(11/500*10)=-2.18442457113743 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context (manual curation of fusion genes in FusionPDB) | PubMed: PDGFB [Title/Abstract] AND DGCR2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | PDGFB(39626089)-DGCR2(19077003), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | PDGFB-DGCR2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PDGFB-DGCR2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. PDGFB-DGCR2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. PDGFB-DGCR2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. PDGFB-DGCR2 seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF. PDGFB-DGCR2 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PDGFB | GO:0001938 | positive regulation of endothelial cell proliferation | 9685360 |
Hgene | PDGFB | GO:0002548 | monocyte chemotaxis | 17991872 |
Hgene | PDGFB | GO:0006468 | protein phosphorylation | 17942966 |
Hgene | PDGFB | GO:0008284 | positive regulation of cell proliferation | 2439522|2836953|7073684 |
Hgene | PDGFB | GO:0009611 | response to wounding | 2538439 |
Hgene | PDGFB | GO:0010512 | negative regulation of phosphatidylinositol biosynthetic process | 2538439 |
Hgene | PDGFB | GO:0010544 | negative regulation of platelet activation | 2538439 |
Hgene | PDGFB | GO:0010628 | positive regulation of gene expression | 23554459|24008408 |
Hgene | PDGFB | GO:0010629 | negative regulation of gene expression | 23554459|25089138 |
Hgene | PDGFB | GO:0014068 | positive regulation of phosphatidylinositol 3-kinase signaling | 10734101|11788434|17942966 |
Hgene | PDGFB | GO:0014911 | positive regulation of smooth muscle cell migration | 9409235 |
Hgene | PDGFB | GO:0018105 | peptidyl-serine phosphorylation | 16530387 |
Hgene | PDGFB | GO:0018108 | peptidyl-tyrosine phosphorylation | 10734101|16530387 |
Hgene | PDGFB | GO:0030335 | positive regulation of cell migration | 11788434|21245381 |
Hgene | PDGFB | GO:0031954 | positive regulation of protein autophosphorylation | 12070119|16530387 |
Hgene | PDGFB | GO:0032091 | negative regulation of protein binding | 22619279 |
Hgene | PDGFB | GO:0032147 | activation of protein kinase activity | 16530387 |
Hgene | PDGFB | GO:0032148 | activation of protein kinase B activity | 16530387 |
Hgene | PDGFB | GO:0035655 | interleukin-18-mediated signaling pathway | 21321938 |
Hgene | PDGFB | GO:0035793 | positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway | 19019919 |
Hgene | PDGFB | GO:0043406 | positive regulation of MAP kinase activity | 9685360|11788434|16530387|17942966 |
Hgene | PDGFB | GO:0043536 | positive regulation of blood vessel endothelial cell migration | 9685360 |
Hgene | PDGFB | GO:0043552 | positive regulation of phosphatidylinositol 3-kinase activity | 16530387 |
Hgene | PDGFB | GO:0045737 | positive regulation of cyclin-dependent protein serine/threonine kinase activity | 16530387 |
Hgene | PDGFB | GO:0045840 | positive regulation of mitotic nuclear division | 10644978|10734101|17942966 |
Hgene | PDGFB | GO:0045892 | negative regulation of transcription, DNA-templated | 16530387|25089138 |
Hgene | PDGFB | GO:0045893 | positive regulation of transcription, DNA-templated | 16530387|17324121 |
Hgene | PDGFB | GO:0048008 | platelet-derived growth factor receptor signaling pathway | 2439522|2536956|2836953|19088079|21245381|23554459 |
Hgene | PDGFB | GO:0048146 | positive regulation of fibroblast proliferation | 2439522|10644978|17324121 |
Hgene | PDGFB | GO:0048661 | positive regulation of smooth muscle cell proliferation | 21321938 |
Hgene | PDGFB | GO:0050731 | positive regulation of peptidyl-tyrosine phosphorylation | 21245381 |
Hgene | PDGFB | GO:0050921 | positive regulation of chemotaxis | 9409235|19019919 |
Hgene | PDGFB | GO:0060326 | cell chemotaxis | 16014047|17991872|21245381 |
Hgene | PDGFB | GO:0061098 | positive regulation of protein tyrosine kinase activity | 16530387 |
Hgene | PDGFB | GO:0070374 | positive regulation of ERK1 and ERK2 cascade | 11788434|16530387|17942966 |
Hgene | PDGFB | GO:0071363 | cellular response to growth factor stimulus | 21245381 |
Hgene | PDGFB | GO:0072126 | positive regulation of glomerular mesangial cell proliferation | 11788434|16014047 |
Hgene | PDGFB | GO:0090280 | positive regulation of calcium ion import | 19019919 |
Hgene | PDGFB | GO:1900127 | positive regulation of hyaluronan biosynthetic process | 17324121 |
Hgene | PDGFB | GO:1902894 | negative regulation of pri-miRNA transcription by RNA polymerase II | 26493107 |
Hgene | PDGFB | GO:1902895 | positive regulation of pri-miRNA transcription by RNA polymerase II | 19088079 |
Hgene | PDGFB | GO:1904707 | positive regulation of vascular smooth muscle cell proliferation | 12070119|19088079|23554459 |
Hgene | PDGFB | GO:1904754 | positive regulation of vascular associated smooth muscle cell migration | 12070119|19088079|23554459 |
Hgene | PDGFB | GO:1905064 | negative regulation of vascular smooth muscle cell differentiation | 19088079 |
Hgene | PDGFB | GO:1905176 | positive regulation of vascular smooth muscle cell dedifferentiation | 19088079 |
Hgene | PDGFB | GO:2000379 | positive regulation of reactive oxygen species metabolic process | 19019919 |
Hgene | PDGFB | GO:2000573 | positive regulation of DNA biosynthetic process | 10644978|10734101|11788434|12070119|16530387|17942966|19019919 |
Hgene | PDGFB | GO:2000591 | positive regulation of metanephric mesenchymal cell migration | 10734101 |
Fusion gene breakpoints across PDGFB (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across DGCR2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
Fusion gene information from FusionGDB2.0. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LGG | TCGA-TM-A84J-01A | PDGFB | chr22 | 39626088 | - | DGCR2 | chr22 | 19055737 | - |
ChimerDB4 | LGG | TCGA-TM-A84J-01A | PDGFB | chr22 | 39626088 | - | DGCR2 | chr22 | 19077002 | - |
ChimerDB4 | LGG | TCGA-TM-A84J-01A | PDGFB | chr22 | 39626089 | - | DGCR2 | chr22 | 19077003 | - |
ChimerDB4 | LGG | TCGA-TM-A84J | PDGFB | chr22 | 39626088 | - | DGCR2 | chr22 | 19055738 | - |
ChimerDB4 | LGG | TCGA-TM-A84J | PDGFB | chr22 | 39626088 | - | DGCR2 | chr22 | 19077003 | - |
ChimerDB4 | LGG | TCGA-TM-A84J | PDGFB | chr22 | 39626089 | - | DGCR2 | chr22 | 19077003 | - |
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Fusion ORF Analysis |
Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000331163 | PDGFB | chr22 | 39626088 | - | ENST00000545799 | DGCR2 | chr22 | 19055738 | - | 5798 | 1389 | 1831 | 473 | 452 |
ENST00000381551 | PDGFB | chr22 | 39626088 | - | ENST00000545799 | DGCR2 | chr22 | 19055738 | - | 5002 | 593 | 19 | 1200 | 393 |
ENST00000331163 | PDGFB | chr22 | 39626088 | - | ENST00000545799 | DGCR2 | chr22 | 19055737 | - | 5798 | 1389 | 1831 | 473 | 452 |
ENST00000381551 | PDGFB | chr22 | 39626088 | - | ENST00000545799 | DGCR2 | chr22 | 19055737 | - | 5002 | 593 | 19 | 1200 | 393 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000331163 | ENST00000545799 | PDGFB | chr22 | 39626088 | - | DGCR2 | chr22 | 19055738 | - | 0.14309576 | 0.8569042 |
ENST00000381551 | ENST00000545799 | PDGFB | chr22 | 39626088 | - | DGCR2 | chr22 | 19055738 | - | 0.14971963 | 0.8502804 |
ENST00000331163 | ENST00000545799 | PDGFB | chr22 | 39626088 | - | DGCR2 | chr22 | 19055737 | - | 0.14309576 | 0.8569042 |
ENST00000381551 | ENST00000545799 | PDGFB | chr22 | 39626088 | - | DGCR2 | chr22 | 19055737 | - | 0.14971963 | 0.8502804 |
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Fusion Amino Acid Sequences |
For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >63834_63834_1_PDGFB-DGCR2_PDGFB_chr22_39626088_ENST00000331163_DGCR2_chr22_19055737_ENST00000545799_length(amino acids)=452AA_BP=0 MYHGITHTPIFECHLPATFQGAVPASDNILIANPQLALVLPTKAPLGLVPFLGQDKAQLLVSGEGGERAIQALAGLRGIPVVLPAQVDPV AAGRAFVVVPPCRALPAEANGLRHVHRVEVRRVASSGPPLPRIHSLLPMMRTHLPGHFSLLLGTPRASGHRPCSCHCLTLACQVVFQRHR GLLKDWLLPHNLDLSHLDRSQLHLGGAALHVAVVAAAGAALHLHTGRPHQEVGVGAVYEAPGDLEHLGARLALGDHGRLSNGQGTQAPSS TSQALQLASRVGAGHVQVQLGPIFLSGVSVQQALEIIKGADRVVTQHLIKLLGNGVPLGADQTQVAAERQEERPAAIHADSGPGPAGPRT RRSSAPPPRPGWGAGEGGGLGSGPRRSGAQASAAAAHPHGPRAPPPPAPAPSLGGRGGPGRRTWVRGRYLGGSRARVSIHGRGAASRTSR -------------------------------------------------------------- >63834_63834_2_PDGFB-DGCR2_PDGFB_chr22_39626088_ENST00000331163_DGCR2_chr22_19055738_ENST00000545799_length(amino acids)=452AA_BP=0 MYHGITHTPIFECHLPATFQGAVPASDNILIANPQLALVLPTKAPLGLVPFLGQDKAQLLVSGEGGERAIQALAGLRGIPVVLPAQVDPV AAGRAFVVVPPCRALPAEANGLRHVHRVEVRRVASSGPPLPRIHSLLPMMRTHLPGHFSLLLGTPRASGHRPCSCHCLTLACQVVFQRHR GLLKDWLLPHNLDLSHLDRSQLHLGGAALHVAVVAAAGAALHLHTGRPHQEVGVGAVYEAPGDLEHLGARLALGDHGRLSNGQGTQAPSS TSQALQLASRVGAGHVQVQLGPIFLSGVSVQQALEIIKGADRVVTQHLIKLLGNGVPLGADQTQVAAERQEERPAAIHADSGPGPAGPRT RRSSAPPPRPGWGAGEGGGLGSGPRRSGAQASAAAAHPHGPRAPPPPAPAPSLGGRGGPGRRTWVRGRYLGGSRARVSIHGRGAASRTSR -------------------------------------------------------------- >63834_63834_3_PDGFB-DGCR2_PDGFB_chr22_39626088_ENST00000381551_DGCR2_chr22_19055737_ENST00000545799_length(amino acids)=393AA_BP=191 MSRNGEMFIMGLGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKT RTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPV TRSPGGSQEQREVTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSRKCPTGWHHYEGTASCYRVYLSGENYWDAAQTCQRLN GSLATFSTDQELRFVLAQEWDQPERSFGWKDQRKLWVGYQYVITGRNRSLEGRWEVAFKDWGVSDTMVHRRLLCPCVGTLHTHLKLGARF -------------------------------------------------------------- >63834_63834_4_PDGFB-DGCR2_PDGFB_chr22_39626088_ENST00000381551_DGCR2_chr22_19055738_ENST00000545799_length(amino acids)=393AA_BP=191 MSRNGEMFIMGLGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKT RTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPV TRSPGGSQEQREVTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSRKCPTGWHHYEGTASCYRVYLSGENYWDAAQTCQRLN GSLATFSTDQELRFVLAQEWDQPERSFGWKDQRKLWVGYQYVITGRNRSLEGRWEVAFKDWGVSDTMVHRRLLCPCVGTLHTHLKLGARF -------------------------------------------------------------- |
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Fusion Protein Functional Features |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr22:39626089/chr22:19077003) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
PDGFB | DGCR2 |
FUNCTION: Growth factor that plays an essential role in the regulation of embryonic development, cell proliferation, cell migration, survival and chemotaxis. Potent mitogen for cells of mesenchymal origin (PubMed:26599395). Required for normal proliferation and recruitment of pericytes and vascular smooth muscle cells in the central nervous system, skin, lung, heart and placenta. Required for normal blood vessel development, and for normal development of kidney glomeruli. Plays an important role in wound healing. Signaling is modulated by the formation of heterodimers with PDGFA (By similarity). {ECO:0000250|UniProtKB:P31240, ECO:0000269|PubMed:26599395}. | FUNCTION: Putative adhesion receptor, that could be involved in cell-cell or cell-matrix interactions required for normal cell differentiation and migration. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- Retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | DGCR2 | chr22:39626088 | chr22:19055737 | ENST00000263196 | 1 | 10 | 115_241 | 67.33333333333333 | 551.0 | Domain | C-type lectin | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055737 | ENST00000263196 | 1 | 10 | 270_333 | 67.33333333333333 | 551.0 | Domain | Note=VWFC | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055737 | ENST00000537045 | 0 | 9 | 115_241 | 26.333333333333332 | 510.0 | Domain | C-type lectin | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055737 | ENST00000537045 | 0 | 9 | 270_333 | 26.333333333333332 | 510.0 | Domain | Note=VWFC | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055737 | ENST00000537045 | 0 | 9 | 28_68 | 26.333333333333332 | 510.0 | Domain | LDL-receptor class A | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055738 | ENST00000263196 | 1 | 10 | 115_241 | 67.33333333333333 | 551.0 | Domain | C-type lectin | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055738 | ENST00000263196 | 1 | 10 | 270_333 | 67.33333333333333 | 551.0 | Domain | Note=VWFC | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055738 | ENST00000537045 | 0 | 9 | 115_241 | 26.333333333333332 | 510.0 | Domain | C-type lectin | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055738 | ENST00000537045 | 0 | 9 | 270_333 | 26.333333333333332 | 510.0 | Domain | Note=VWFC | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055738 | ENST00000537045 | 0 | 9 | 28_68 | 26.333333333333332 | 510.0 | Domain | LDL-receptor class A | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055737 | ENST00000263196 | 1 | 10 | 369_550 | 67.33333333333333 | 551.0 | Topological domain | Cytoplasmic | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055737 | ENST00000537045 | 0 | 9 | 369_550 | 26.333333333333332 | 510.0 | Topological domain | Cytoplasmic | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055738 | ENST00000263196 | 1 | 10 | 369_550 | 67.33333333333333 | 551.0 | Topological domain | Cytoplasmic | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055738 | ENST00000537045 | 0 | 9 | 369_550 | 26.333333333333332 | 510.0 | Topological domain | Cytoplasmic | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055737 | ENST00000263196 | 1 | 10 | 350_368 | 67.33333333333333 | 551.0 | Transmembrane | Helical | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055737 | ENST00000537045 | 0 | 9 | 350_368 | 26.333333333333332 | 510.0 | Transmembrane | Helical | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055738 | ENST00000263196 | 1 | 10 | 350_368 | 67.33333333333333 | 551.0 | Transmembrane | Helical | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055738 | ENST00000537045 | 0 | 9 | 350_368 | 26.333333333333332 | 510.0 | Transmembrane | Helical |
- Not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | DGCR2 | chr22:39626088 | chr22:19055737 | ENST00000263196 | 1 | 10 | 28_68 | 67.33333333333333 | 551.0 | Domain | LDL-receptor class A | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055738 | ENST00000263196 | 1 | 10 | 28_68 | 67.33333333333333 | 551.0 | Domain | LDL-receptor class A | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055737 | ENST00000263196 | 1 | 10 | 21_349 | 67.33333333333333 | 551.0 | Topological domain | Extracellular | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055737 | ENST00000537045 | 0 | 9 | 21_349 | 26.333333333333332 | 510.0 | Topological domain | Extracellular | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055738 | ENST00000263196 | 1 | 10 | 21_349 | 67.33333333333333 | 551.0 | Topological domain | Extracellular | |
Tgene | DGCR2 | chr22:39626088 | chr22:19055738 | ENST00000537045 | 0 | 9 | 21_349 | 26.333333333333332 | 510.0 | Topological domain | Extracellular |
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Fusion Protein-Protein Interaction |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160) |
Gene | PPI interactors |
Protein-protein interactors based on sequence similarity (STRING) |
Gene | STRING network |
PDGFB | |
DGCR2 |
- Retained interactions in fusion protein (protein functional feature from UniProt). |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost interactions due to fusion (protein functional feature from UniProt). |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to PDGFB-DGCR2 |
Drugs used for this fusion-positive patient. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to PDGFB-DGCR2 |
Diseases that have this fusion gene. (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PDGFB | C3809645 | BASAL GANGLIA CALCIFICATION, IDIOPATHIC, 5 | 5 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Hgene | PDGFB | C0393590 | Fahr's syndrome (disorder) | 3 | GENOMICS_ENGLAND;ORPHANET |
Hgene | PDGFB | C0004782 | Basal Ganglia Diseases | 1 | CTD_human |
Hgene | PDGFB | C0006663 | Calcinosis | 1 | CTD_human |
Hgene | PDGFB | C0015371 | Extrapyramidal Disorders | 1 | CTD_human |
Hgene | PDGFB | C0016059 | Fibrosis | 1 | CTD_human |
Hgene | PDGFB | C0017566 | Gingival Hyperplasia | 1 | CTD_human |
Hgene | PDGFB | C0025286 | Meningioma | 1 | ORPHANET |
Hgene | PDGFB | C0034069 | Pulmonary Fibrosis | 1 | CTD_human |
Hgene | PDGFB | C0035309 | Retinal Diseases | 1 | CTD_human |
Hgene | PDGFB | C0040028 | Thrombocythemia, Essential | 1 | CTD_human |
Hgene | PDGFB | C0263628 | Tumoral calcinosis | 1 | CTD_human |
Hgene | PDGFB | C0521174 | Microcalcification | 1 | CTD_human |
Hgene | PDGFB | C0750951 | Lenticulostriate Disorders | 1 | CTD_human |
Hgene | PDGFB | C1623038 | Cirrhosis | 1 | CTD_human |
Hgene | PDGFB | C2239176 | Liver carcinoma | 1 | CTD_human |
Hgene | PDGFB | C3489628 | Thrombocytosis, Autosomal Dominant | 1 | CTD_human |
Hgene | PDGFB | C4551624 | Idiopathic basal ganglia calcification 1 | 1 | CTD_human |
Hgene | PDGFB | C4721507 | Alveolitis, Fibrosing | 1 | CTD_human |