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Fusion Protein:SUFU-CYP26A1 |
Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: SUFU-CYP26A1 | FusionPDB ID: 87980 | FusionGDB2.0 ID: 87980 | Hgene | Tgene | Gene symbol | SUFU | CYP26A1 | Gene ID | 51684 | 1592 |
Gene name | SUFU negative regulator of hedgehog signaling | cytochrome P450 family 26 subfamily A member 1 | |
Synonyms | JBTS32|PRO1280|SUFUH|SUFUXL | CP26|CYP26|P450RAI|P450RAI1 | |
Cytomap | 10q24.32 | 10q23.33 | |
Type of gene | protein-coding | protein-coding | |
Description | suppressor of fused homolog | cytochrome P450 26A1P450, retinoic acid-inactivating, 1cytochrome P450 retinoic acid-inactivating 1cytochrome P450, family 26, subfamily A, polypeptide 1cytochrome P450, subfamily XXVIA, polypeptide 1cytochrome P450RAIhP450RAIretinoic acid 4-hydrox | |
Modification date | 20200313 | 20200329 | |
UniProtAcc | . | O43174 | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000369899, ENST00000369902, ENST00000423559, ENST00000471000, | ENST00000224356, ENST00000371531, ENST00000394139, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 10 X 7 X 6=420 | 3 X 3 X 3=27 |
# samples | 13 | 4 | |
** MAII score | log2(13/420*10)=-1.69187770463767 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/27*10)=0.567040592723894 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context (manual curation of fusion genes in FusionPDB) | PubMed: SUFU [Title/Abstract] AND CYP26A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | SUFU(104377185)-CYP26A1(94835583), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | SUFU-CYP26A1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. SUFU-CYP26A1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. SUFU-CYP26A1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. SUFU-CYP26A1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. SUFU-CYP26A1 seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF. SUFU-CYP26A1 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF. SUFU-CYP26A1 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SUFU | GO:0000122 | negative regulation of transcription by RNA polymerase II | 10564661 |
Tgene | CYP26A1 | GO:0006805 | xenobiotic metabolic process | 26937021 |
Tgene | CYP26A1 | GO:0034653 | retinoic acid catabolic process | 10823918 |
Tgene | CYP26A1 | GO:0042573 | retinoic acid metabolic process | 9716180|22020119 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Gene Sample Information |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | PRAD | TCGA-EJ-A7NN-01A | SUFU | chr10 | 104377185 | - | CYP26A1 | chr10 | 94835583 | + |
ChimerDB4 | PRAD | TCGA-EJ-A7NN-01A | SUFU | chr10 | 104377185 | + | CYP26A1 | chr10 | 94835583 | + |
ChimerDB4 | PRAD | TCGA-EJ-A7NN | SUFU | chr10 | 104377185 | + | CYP26A1 | chr10 | 94834065 | + |
ChimerDB4 | PRAD | TCGA-EJ-A7NN | SUFU | chr10 | 104377185 | + | CYP26A1 | chr10 | 94835583 | + |
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Fusion ORF Analysis |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000369902 | SUFU | chr10 | 104377185 | + | ENST00000371531 | CYP26A1 | chr10 | 94835583 | + | 2672 | 1462 | 97 | 2091 | 664 |
ENST00000369902 | SUFU | chr10 | 104377185 | + | ENST00000224356 | CYP26A1 | chr10 | 94835583 | + | 2678 | 1462 | 97 | 2091 | 664 |
ENST00000369902 | SUFU | chr10 | 104377185 | + | ENST00000394139 | CYP26A1 | chr10 | 94835583 | + | 2678 | 1462 | 97 | 2091 | 664 |
ENST00000369899 | SUFU | chr10 | 104377185 | + | ENST00000371531 | CYP26A1 | chr10 | 94835583 | + | 2652 | 1442 | 77 | 2071 | 664 |
ENST00000369899 | SUFU | chr10 | 104377185 | + | ENST00000224356 | CYP26A1 | chr10 | 94835583 | + | 2658 | 1442 | 77 | 2071 | 664 |
ENST00000369899 | SUFU | chr10 | 104377185 | + | ENST00000394139 | CYP26A1 | chr10 | 94835583 | + | 2658 | 1442 | 77 | 2071 | 664 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000369902 | ENST00000371531 | SUFU | chr10 | 104377185 | + | CYP26A1 | chr10 | 94835583 | + | 0.001613155 | 0.99838686 |
ENST00000369902 | ENST00000224356 | SUFU | chr10 | 104377185 | + | CYP26A1 | chr10 | 94835583 | + | 0.001587544 | 0.9984125 |
ENST00000369902 | ENST00000394139 | SUFU | chr10 | 104377185 | + | CYP26A1 | chr10 | 94835583 | + | 0.001587544 | 0.9984125 |
ENST00000369899 | ENST00000371531 | SUFU | chr10 | 104377185 | + | CYP26A1 | chr10 | 94835583 | + | 0.001606942 | 0.998393 |
ENST00000369899 | ENST00000224356 | SUFU | chr10 | 104377185 | + | CYP26A1 | chr10 | 94835583 | + | 0.001577619 | 0.9984224 |
ENST00000369899 | ENST00000394139 | SUFU | chr10 | 104377185 | + | CYP26A1 | chr10 | 94835583 | + | 0.001577619 | 0.9984224 |
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Fusion Amino Acid Sequences |
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>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP >87980_87980_1_SUFU-CYP26A1_SUFU_chr10_104377185_ENST00000369899_CYP26A1_chr10_94835583_ENST00000224356_length(amino acids)=664AA_BP=455 MARQCSPRRLPSPVPPVPALRTPMAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKYWLGGPDP LDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFELTFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCS GDHVSWHSPLDNSESRIQHMLLTEDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETIFEI DPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRLSGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAH DRAPSRKDSLESDSSTAIIPHELIRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATEEHPYAAH GPWLQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREELKSKGLLCKSNQDNKLDMEILEQLKYIGCVIKETLRLNPPVPGG FRVALKTFELNGYQIPKGWNVIYSICDTHDVAEIFTNKEEFNPDRFMLPHPEDASRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARHC -------------------------------------------------------------- >87980_87980_2_SUFU-CYP26A1_SUFU_chr10_104377185_ENST00000369899_CYP26A1_chr10_94835583_ENST00000371531_length(amino acids)=664AA_BP=455 MARQCSPRRLPSPVPPVPALRTPMAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKYWLGGPDP LDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFELTFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCS GDHVSWHSPLDNSESRIQHMLLTEDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETIFEI DPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRLSGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAH DRAPSRKDSLESDSSTAIIPHELIRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATEEHPYAAH GPWLQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREELKSKGLLCKSNQDNKLDMEILEQLKYIGCVIKETLRLNPPVPGG FRVALKTFELNGYQIPKGWNVIYSICDTHDVAEIFTNKEEFNPDRFMLPHPEDASRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARHC -------------------------------------------------------------- >87980_87980_3_SUFU-CYP26A1_SUFU_chr10_104377185_ENST00000369899_CYP26A1_chr10_94835583_ENST00000394139_length(amino acids)=664AA_BP=455 MARQCSPRRLPSPVPPVPALRTPMAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKYWLGGPDP LDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFELTFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCS GDHVSWHSPLDNSESRIQHMLLTEDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETIFEI DPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRLSGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAH DRAPSRKDSLESDSSTAIIPHELIRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATEEHPYAAH GPWLQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREELKSKGLLCKSNQDNKLDMEILEQLKYIGCVIKETLRLNPPVPGG FRVALKTFELNGYQIPKGWNVIYSICDTHDVAEIFTNKEEFNPDRFMLPHPEDASRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARHC -------------------------------------------------------------- >87980_87980_4_SUFU-CYP26A1_SUFU_chr10_104377185_ENST00000369902_CYP26A1_chr10_94835583_ENST00000224356_length(amino acids)=664AA_BP=455 MARQCSPRRLPSPVPPVPALRTPMAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKYWLGGPDP LDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFELTFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCS GDHVSWHSPLDNSESRIQHMLLTEDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETIFEI DPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRLSGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAH DRAPSRKDSLESDSSTAIIPHELIRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATEEHPYAAH GPWLQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREELKSKGLLCKSNQDNKLDMEILEQLKYIGCVIKETLRLNPPVPGG FRVALKTFELNGYQIPKGWNVIYSICDTHDVAEIFTNKEEFNPDRFMLPHPEDASRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARHC -------------------------------------------------------------- >87980_87980_5_SUFU-CYP26A1_SUFU_chr10_104377185_ENST00000369902_CYP26A1_chr10_94835583_ENST00000371531_length(amino acids)=664AA_BP=455 MARQCSPRRLPSPVPPVPALRTPMAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKYWLGGPDP LDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFELTFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCS GDHVSWHSPLDNSESRIQHMLLTEDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETIFEI DPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRLSGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAH DRAPSRKDSLESDSSTAIIPHELIRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATEEHPYAAH GPWLQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREELKSKGLLCKSNQDNKLDMEILEQLKYIGCVIKETLRLNPPVPGG FRVALKTFELNGYQIPKGWNVIYSICDTHDVAEIFTNKEEFNPDRFMLPHPEDASRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARHC -------------------------------------------------------------- >87980_87980_6_SUFU-CYP26A1_SUFU_chr10_104377185_ENST00000369902_CYP26A1_chr10_94835583_ENST00000394139_length(amino acids)=664AA_BP=455 MARQCSPRRLPSPVPPVPALRTPMAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKYWLGGPDP LDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFELTFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCS GDHVSWHSPLDNSESRIQHMLLTEDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETIFEI DPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRLSGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAH DRAPSRKDSLESDSSTAIIPHELIRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATEEHPYAAH GPWLQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREELKSKGLLCKSNQDNKLDMEILEQLKYIGCVIKETLRLNPPVPGG FRVALKTFELNGYQIPKGWNVIYSICDTHDVAEIFTNKEEFNPDRFMLPHPEDASRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARHC -------------------------------------------------------------- |
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Fusion Protein Functional Features |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr10:104377185/chr10:94835583) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | CYP26A1 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: A cytochrome P450 monooxygenase involved in the metabolism of all-trans retinoic acid (atRA), a signaling molecule that binds to retinoic acid receptors and regulates gene transcription. Mechanistically, uses molecular oxygen inserting one oxygen atom into a substrate, and reducing the second into a water molecule, with two electrons provided by NADPH via cytochrome P450 reductase (CPR; NADPH-ferrihemoprotein reductase). Catalyzes the hydroxylation of carbon hydrogen bonds of atRA primarily at C-4 and C-18. Has no activity toward 9-cis and 13-cis retinoic acid stereoisomers (PubMed:22020119, PubMed:9228017, PubMed:9716180). May play a role in the oxidative metabolism of xenobiotics such as tazarotenic acid (PubMed:26937021). {ECO:0000269|PubMed:22020119, ECO:0000269|PubMed:26937021, ECO:0000269|PubMed:9228017, ECO:0000269|PubMed:9716180}. |
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- Retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SUFU | chr10:104377185 | chr10:94835583 | ENST00000369899 | + | 10 | 11 | 279_360 | 432.0 | 434.0 | Region | Intrinsically disordered |
Hgene | SUFU | chr10:104377185 | chr10:94835583 | ENST00000369902 | + | 10 | 12 | 279_360 | 432.0 | 485.0 | Region | Intrinsically disordered |
- Not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SUFU | chr10:104377185 | chr10:94835583 | ENST00000423559 | + | 1 | 10 | 279_360 | 0 | 482.0 | Region | Intrinsically disordered |
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Fusion Protein Structures |
![]() * Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format. |
Fusion protein PDB link (fusion AA seq ID in FusionPDB) | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | AA seq | Len(AA seq) |
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pLDDT score distribution |
![]() * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
SUFU_pLDDT.png![]() |
CYP26A1_pLDDT.png![]() |
![]() * AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. |
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Ramachandran Plot of Fusion Protein Structure |
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Fusion AA seq ID in FusionPDB and their Ramachandran plots |
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Fusion Protein-Protein Interaction |
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Gene | PPI interactors |
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Gene | STRING network |
SUFU | |
CYP26A1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs to SUFU-CYP26A1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to SUFU-CYP26A1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |