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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:WWOX-C15orf41

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: WWOX-C15orf41
FusionPDB ID: 99475
FusionGDB2.0 ID: 99475
HgeneTgene
Gene symbol

WWOX

C15orf41

Gene ID

51741

84529

Gene nameWW domain containing oxidoreductasechromosome 15 open reading frame 41
SynonymsD16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1HH114
Cytomap

16q23.1-q23.2

15q14

Type of geneprotein-codingprotein-coding
DescriptionWW domain-containing oxidoreductaseWW domain-containing protein WWOXfragile site FRA16D oxidoreductaseshort chain dehydrogenase/reductase family 41C member 1protein C15orf41uncharacterized protein C15orf41
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST idsENST00000565791, ENST00000355860, 
ENST00000406884, ENST00000408984, 
ENST00000566780, ENST00000402655, 
ENST00000539474, ENST00000569818, 
ENST00000338183, ENST00000437989, 
ENST00000562877, ENST00000566621, 
ENST00000567389, ENST00000569302, 
ENST00000562489, ENST00000563167, 
ENST00000565792, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score26 X 26 X 8=54088 X 5 X 7=280
# samples 3110
** MAII scorelog2(31/5408*10)=-4.12475503100795
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(10/280*10)=-1.48542682717024
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: WWOX [Title/Abstract] AND C15orf41 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)WWOX(78198186)-C15orf41(37100525), # samples:2
Anticipated loss of major functional domain due to fusion event.WWOX-C15orf41 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
WWOX-C15orf41 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
WWOX-C15orf41 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
WWOX-C15orf41 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
WWOX-C15orf41 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
WWOX-C15orf41 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF.
WWOX-C15orf41 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneWWOX

GO:0030178

negative regulation of Wnt signaling pathway

19465938

HgeneWWOX

GO:0071560

cellular response to transforming growth factor beta stimulus

19366691


check buttonFusion gene breakpoints across WWOX (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across C15orf41 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4GBMTCGA-06-5415-01AWWOXchr16

78198186

-C15orf41chr15

37100525

+
ChimerDB4GBMTCGA-06-5415-01AWWOXchr16

78198186

+C15orf41chr15

37100525

+


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000566780WWOXchr1678198186+ENST00000566621C15orf41chr1537100525+27828823661118250
ENST00000566780WWOXchr1678198186+ENST00000437989C15orf41chr1537100525+23898823661079237
ENST00000566780WWOXchr1678198186+ENST00000562877C15orf41chr1537100525+10128823661010215
ENST00000406884WWOXchr1678198186+ENST00000566621C15orf41chr1537100525+2541641125877250
ENST00000406884WWOXchr1678198186+ENST00000437989C15orf41chr1537100525+2148641125838237
ENST00000406884WWOXchr1678198186+ENST00000562877C15orf41chr1537100525+771641125769215
ENST00000408984WWOXchr1678198186+ENST00000566621C15orf41chr1537100525+250160185837250
ENST00000408984WWOXchr1678198186+ENST00000437989C15orf41chr1537100525+210860185798237
ENST00000408984WWOXchr1678198186+ENST00000562877C15orf41chr1537100525+73160185729215
ENST00000355860WWOXchr1678198186+ENST00000566621C15orf41chr1537100525+2516616100852250
ENST00000355860WWOXchr1678198186+ENST00000437989C15orf41chr1537100525+2123616100813237
ENST00000355860WWOXchr1678198186+ENST00000562877C15orf41chr1537100525+746616100744215

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000566780ENST00000566621WWOXchr1678198186+C15orf41chr1537100525+0.0041141920.9958858
ENST00000566780ENST00000437989WWOXchr1678198186+C15orf41chr1537100525+0.0028946060.9971054
ENST00000566780ENST00000562877WWOXchr1678198186+C15orf41chr1537100525+0.79791240.20208761
ENST00000406884ENST00000566621WWOXchr1678198186+C15orf41chr1537100525+0.002905540.9970945
ENST00000406884ENST00000437989WWOXchr1678198186+C15orf41chr1537100525+0.0023478370.99765223
ENST00000406884ENST00000562877WWOXchr1678198186+C15orf41chr1537100525+0.85343780.1465622
ENST00000408984ENST00000566621WWOXchr1678198186+C15orf41chr1537100525+0.0024934180.99750656
ENST00000408984ENST00000437989WWOXchr1678198186+C15orf41chr1537100525+0.0018569530.9981431
ENST00000408984ENST00000562877WWOXchr1678198186+C15orf41chr1537100525+0.73189750.26810247
ENST00000355860ENST00000566621WWOXchr1678198186+C15orf41chr1537100525+0.0027050260.99729496
ENST00000355860ENST00000437989WWOXchr1678198186+C15orf41chr1537100525+0.0018386610.9981614
ENST00000355860ENST00000562877WWOXchr1678198186+C15orf41chr1537100525+0.7885920.211408

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>99475_99475_1_WWOX-C15orf41_WWOX_chr16_78198186_ENST00000355860_C15orf41_chr15_37100525_ENST00000437989_length(amino acids)=237AA_BP=159
MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL
AFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWIWARLSHL

--------------------------------------------------------------

>99475_99475_2_WWOX-C15orf41_WWOX_chr16_78198186_ENST00000355860_C15orf41_chr15_37100525_ENST00000562877_length(amino acids)=215AA_BP=159
MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL
AFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWIWARLSHL

--------------------------------------------------------------

>99475_99475_3_WWOX-C15orf41_WWOX_chr16_78198186_ENST00000355860_C15orf41_chr15_37100525_ENST00000566621_length(amino acids)=250AA_BP=159
MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL
AFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWIWARLSHL

--------------------------------------------------------------

>99475_99475_4_WWOX-C15orf41_WWOX_chr16_78198186_ENST00000406884_C15orf41_chr15_37100525_ENST00000437989_length(amino acids)=237AA_BP=159
MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL
AFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWIWARLSHL

--------------------------------------------------------------

>99475_99475_5_WWOX-C15orf41_WWOX_chr16_78198186_ENST00000406884_C15orf41_chr15_37100525_ENST00000562877_length(amino acids)=215AA_BP=159
MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL
AFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWIWARLSHL

--------------------------------------------------------------

>99475_99475_6_WWOX-C15orf41_WWOX_chr16_78198186_ENST00000406884_C15orf41_chr15_37100525_ENST00000566621_length(amino acids)=250AA_BP=159
MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL
AFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWIWARLSHL

--------------------------------------------------------------

>99475_99475_7_WWOX-C15orf41_WWOX_chr16_78198186_ENST00000408984_C15orf41_chr15_37100525_ENST00000437989_length(amino acids)=237AA_BP=159
MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL
AFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWIWARLSHL

--------------------------------------------------------------

>99475_99475_8_WWOX-C15orf41_WWOX_chr16_78198186_ENST00000408984_C15orf41_chr15_37100525_ENST00000562877_length(amino acids)=215AA_BP=159
MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL
AFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWIWARLSHL

--------------------------------------------------------------

>99475_99475_9_WWOX-C15orf41_WWOX_chr16_78198186_ENST00000408984_C15orf41_chr15_37100525_ENST00000566621_length(amino acids)=250AA_BP=159
MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL
AFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWIWARLSHL

--------------------------------------------------------------

>99475_99475_10_WWOX-C15orf41_WWOX_chr16_78198186_ENST00000566780_C15orf41_chr15_37100525_ENST00000437989_length(amino acids)=237AA_BP=159
MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL
AFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWIWARLSHL

--------------------------------------------------------------

>99475_99475_11_WWOX-C15orf41_WWOX_chr16_78198186_ENST00000566780_C15orf41_chr15_37100525_ENST00000562877_length(amino acids)=215AA_BP=159
MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL
AFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWIWARLSHL

--------------------------------------------------------------

>99475_99475_12_WWOX-C15orf41_WWOX_chr16_78198186_ENST00000566780_C15orf41_chr15_37100525_ENST00000566621_length(amino acids)=250AA_BP=159
MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL
AFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWIWARLSHL

--------------------------------------------------------------

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr16:78198186/chr15:37100525)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneWWOXchr16:78198186chr15:37100525ENST00000355860+5616_49172.0190.0DomainWW 1
HgeneWWOXchr16:78198186chr15:37100525ENST00000355860+5657_90172.0190.0DomainWW 2
HgeneWWOXchr16:78198186chr15:37100525ENST00000406884+5616_49172.0235.0DomainWW 1
HgeneWWOXchr16:78198186chr15:37100525ENST00000406884+5657_90172.0235.0DomainWW 2
HgeneWWOXchr16:78198186chr15:37100525ENST00000408984+51016_49172.0311.6666666666667DomainWW 1
HgeneWWOXchr16:78198186chr15:37100525ENST00000408984+51057_90172.0311.6666666666667DomainWW 2
HgeneWWOXchr16:78198186chr15:37100525ENST00000566780+5916_49172.0415.0DomainWW 1
HgeneWWOXchr16:78198186chr15:37100525ENST00000566780+5957_90172.0415.0DomainWW 2
HgeneWWOXchr16:78198186chr15:37100525ENST00000355860+5650_55172.0190.0MotifNuclear localization signal
HgeneWWOXchr16:78198186chr15:37100525ENST00000406884+5650_55172.0235.0MotifNuclear localization signal
HgeneWWOXchr16:78198186chr15:37100525ENST00000408984+51050_55172.0311.6666666666667MotifNuclear localization signal
HgeneWWOXchr16:78198186chr15:37100525ENST00000566780+5950_55172.0415.0MotifNuclear localization signal
HgeneWWOXchr16:78198186chr15:37100525ENST00000355860+56131_137172.0190.0Nucleotide bindingNADP
HgeneWWOXchr16:78198186chr15:37100525ENST00000406884+56131_137172.0235.0Nucleotide bindingNADP
HgeneWWOXchr16:78198186chr15:37100525ENST00000408984+510131_137172.0311.6666666666667Nucleotide bindingNADP
HgeneWWOXchr16:78198186chr15:37100525ENST00000566780+59131_137172.0415.0Nucleotide bindingNADP

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneWWOXchr16:78198186chr15:37100525ENST00000402655+1516_490312.0DomainWW 1
HgeneWWOXchr16:78198186chr15:37100525ENST00000402655+1557_900312.0DomainWW 2
HgeneWWOXchr16:78198186chr15:37100525ENST00000569818+1116_49037.0DomainWW 1
HgeneWWOXchr16:78198186chr15:37100525ENST00000569818+1157_90037.0DomainWW 2
HgeneWWOXchr16:78198186chr15:37100525ENST00000402655+1550_550312.0MotifNuclear localization signal
HgeneWWOXchr16:78198186chr15:37100525ENST00000569818+1150_55037.0MotifNuclear localization signal
HgeneWWOXchr16:78198186chr15:37100525ENST00000402655+15131_1370312.0Nucleotide bindingNADP
HgeneWWOXchr16:78198186chr15:37100525ENST00000569818+11131_137037.0Nucleotide bindingNADP
HgeneWWOXchr16:78198186chr15:37100525ENST00000355860+56209_273172.0190.0RegionMediates targeting to the mitochondria
HgeneWWOXchr16:78198186chr15:37100525ENST00000402655+15209_2730312.0RegionMediates targeting to the mitochondria
HgeneWWOXchr16:78198186chr15:37100525ENST00000406884+56209_273172.0235.0RegionMediates targeting to the mitochondria
HgeneWWOXchr16:78198186chr15:37100525ENST00000408984+510209_273172.0311.6666666666667RegionMediates targeting to the mitochondria
HgeneWWOXchr16:78198186chr15:37100525ENST00000566780+59209_273172.0415.0RegionMediates targeting to the mitochondria
HgeneWWOXchr16:78198186chr15:37100525ENST00000569818+11209_273037.0RegionMediates targeting to the mitochondria


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
WWOX
C15orf41


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneWWOXchr16:78198186chr15:37100525ENST00000355860+56125_414172.0190.0MAPT
HgeneWWOXchr16:78198186chr15:37100525ENST00000402655+15125_4140312.0MAPT
HgeneWWOXchr16:78198186chr15:37100525ENST00000406884+56125_414172.0235.0MAPT
HgeneWWOXchr16:78198186chr15:37100525ENST00000408984+510125_414172.0311.6666666666667MAPT
HgeneWWOXchr16:78198186chr15:37100525ENST00000566780+59125_414172.0415.0MAPT
HgeneWWOXchr16:78198186chr15:37100525ENST00000569818+11125_414037.0MAPT


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Related Drugs to WWOX-C15orf41


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to WWOX-C15orf41


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource