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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: EIF4EBP1 (NCBI Gene ID:1978)


Gene Summary

check button Gene Summary
Gene InformationGene Name: EIF4EBP1
Gene ID: 1978
Gene Symbol

EIF4EBP1

Gene ID

1978

Gene Nameeukaryotic translation initiation factor 4E binding protein 1
Synonyms4E-BP1|4EBP1|BP-1|PHAS-I
Cytomap

8p11.23

Type of Geneprotein-coding
Descriptioneukaryotic translation initiation factor 4E-binding protein 1eIF4E-binding protein 1phosphorylated heat- and acid-stable protein regulated by insulin 1
Modification date20200322
UniProtAcc

Q13541


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0017148Negative regulation of translation
GO:0006417Regulation of translation
GO:0006413Translational initiation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneEIF4EBP1

GO:0031929

TOR signaling

12150926|22578813

HgeneEIF4EBP1

GO:0045947

negative regulation of translational initiation

22578813



check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25
EIF4EBP1(355.7 - 733]


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Translation Studies in PubMed

check button We searched PubMed using 'EIF4EBP1[title] AND translation [title] AND human.'
GeneTitlePMID
EIF4EBP1..


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
all structure

check buttonExpression level of gene isoforms across TCGA pancancer
all structure

check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
PRADEIF4EBP1-1.527304066362960.00170492480464144
HNSCEIF4EBP11.168881949266530.0196738412400919
KIRPEIF4EBP1-2.12238544916882.98023223876953e-07
LUADEIF4EBP1-2.826914794568296.51132046672323e-08
BRCAEIF4EBP1-1.8674303125428.26346922422571e-07
KIRCEIF4EBP1-3.148604668796019.40007073737459e-12


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through copy number variation of Translation factor
all structure
Cancer typeGeneCoefficientPvalue
CHOLEIF4EBP1-0.0821740080.014843092

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with EIF4EBP1 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
all structure
Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
THYMCell metabolism geneEIF4EBP1PMM20.8029980139.61E-29
THYMCell metabolism geneEIF4EBP1SLC27A50.8032901228.87E-29
THYMCell metabolism geneEIF4EBP1TOMM400.8050713585.44E-29
THYMCell metabolism geneEIF4EBP1TSTA30.8053410625.05E-29
THYMCell metabolism geneEIF4EBP1MTX10.8070706453.13E-29
THYMCell metabolism geneEIF4EBP1ITPA0.808289862.22E-29
THYMCell metabolism geneEIF4EBP1NANS0.8090601111.79E-29
THYMCell metabolism geneEIF4EBP1GEMIN70.8105019111.19E-29
THYMCell metabolism geneEIF4EBP1EXOSC50.8106528031.14E-29
THYMCell metabolism geneEIF4EBP1PSMB30.8132593835.39E-30
THYMCell metabolism geneEIF4EBP1TIMM130.8135426424.96E-30
THYMCell metabolism geneEIF4EBP1SNRPD20.8135673694.93E-30
THYMCell metabolism geneEIF4EBP1TIMM100.8212335165.06E-31
THYMCell metabolism geneEIF4EBP1TBCB0.8247330151.73E-31
THYMCell metabolism geneEIF4EBP1NME10.825499211.36E-31
THYMCell metabolism geneEIF4EBP1SRM0.8294421313.91E-32
THYMCell metabolism geneEIF4EBP1DOHH0.8321237051.65E-32
THYMCell metabolism geneEIF4EBP1HMBS0.8321432121.64E-32
THYMCell metabolism geneEIF4EBP1NME20.8351695536.04E-33
THYMCell metabolism geneEIF4EBP1TIMM8B0.8391537481.58E-33
THYMCell metabolism geneEIF4EBP1EXOSC40.8411695337.88E-34
THYMCell metabolism geneEIF4EBP1GMPPA0.8487569035.30E-35
THYMCell metabolism geneEIF4EBP1TIMM500.8506499872.64E-35
THYMCell metabolism geneEIF4EBP1POLR2H0.8742484551.82E-39
THYMCell metabolism geneEIF4EBP1ALG30.8746981861.49E-39
THYMEpifactorEIF4EBP1BRMS10.8045325726.31E-29
THYMEpifactorEIF4EBP1EXOSC50.8106528031.14E-29
THYMEpifactorEIF4EBP1FBL0.8241490772.07E-31
THYMEpifactorEIF4EBP1PRMT10.8242334032.02E-31
THYMEpifactorEIF4EBP1SIRT60.8349701936.45E-33
THYMEpifactorEIF4EBP1EXOSC40.8411695337.88E-34
THYMIUPHAREIF4EBP1SLC27A50.8032901228.87E-29
THYMIUPHAREIF4EBP1ECE20.8049553335.62E-29
THYMIUPHAREIF4EBP1SLC39A40.8162230042.27E-30
THYMIUPHAREIF4EBP1FKBP1A0.824229072.02E-31
THYMIUPHAREIF4EBP1PRMT10.8242334032.02E-31
THYMIUPHAREIF4EBP1SIRT60.8349701936.45E-33
THYMTFEIF4EBP1ZNF7870.8075559782.73E-29
THYMTFEIF4EBP1ZNF5110.8127424286.25E-30
THYMTFEIF4EBP1NME20.8351695536.04E-33
THYMTSGEIF4EBP1BRMS10.8045325726.31E-29
THYMTSGEIF4EBP1SLC39A40.8162230042.27E-30
THYMTSGEIF4EBP1GADD45GIP10.8213011894.96E-31
THYMTSGEIF4EBP1PYCARD0.8227135523.22E-31
THYMTSGEIF4EBP1NME10.825499211.36E-31
THYMTSGEIF4EBP1SIRT60.8349701936.45E-33
UCSCell metabolism geneEIF4EBP1PMM20.8029980139.61E-29
UCSCell metabolism geneEIF4EBP1SLC27A50.8032901228.87E-29
UCSCell metabolism geneEIF4EBP1TOMM400.8050713585.44E-29
UCSCell metabolism geneEIF4EBP1TSTA30.8053410625.05E-29
UCSCell metabolism geneEIF4EBP1MTX10.8070706453.13E-29
UCSCell metabolism geneEIF4EBP1ITPA0.808289862.22E-29
UCSCell metabolism geneEIF4EBP1NANS0.8090601111.79E-29
UCSCell metabolism geneEIF4EBP1GEMIN70.8105019111.19E-29
UCSCell metabolism geneEIF4EBP1EXOSC50.8106528031.14E-29
UCSCell metabolism geneEIF4EBP1PSMB30.8132593835.39E-30
UCSCell metabolism geneEIF4EBP1TIMM130.8135426424.96E-30
UCSCell metabolism geneEIF4EBP1SNRPD20.8135673694.93E-30
UCSCell metabolism geneEIF4EBP1TIMM100.8212335165.06E-31
UCSCell metabolism geneEIF4EBP1TBCB0.8247330151.73E-31
UCSCell metabolism geneEIF4EBP1NME10.825499211.36E-31
UCSCell metabolism geneEIF4EBP1SRM0.8294421313.91E-32
UCSCell metabolism geneEIF4EBP1DOHH0.8321237051.65E-32
UCSCell metabolism geneEIF4EBP1HMBS0.8321432121.64E-32
UCSCell metabolism geneEIF4EBP1NME20.8351695536.04E-33
UCSCell metabolism geneEIF4EBP1TIMM8B0.8391537481.58E-33
UCSCell metabolism geneEIF4EBP1EXOSC40.8411695337.88E-34
UCSCell metabolism geneEIF4EBP1GMPPA0.8487569035.30E-35
UCSCell metabolism geneEIF4EBP1TIMM500.8506499872.64E-35
UCSCell metabolism geneEIF4EBP1POLR2H0.8742484551.82E-39
UCSCell metabolism geneEIF4EBP1ALG30.8746981861.49E-39
UCSEpifactorEIF4EBP1BRMS10.8045325726.31E-29
UCSEpifactorEIF4EBP1EXOSC50.8106528031.14E-29
UCSEpifactorEIF4EBP1FBL0.8241490772.07E-31
UCSEpifactorEIF4EBP1PRMT10.8242334032.02E-31
UCSEpifactorEIF4EBP1SIRT60.8349701936.45E-33
UCSEpifactorEIF4EBP1EXOSC40.8411695337.88E-34
UCSIUPHAREIF4EBP1SLC27A50.8032901228.87E-29
UCSIUPHAREIF4EBP1ECE20.8049553335.62E-29
UCSIUPHAREIF4EBP1SLC39A40.8162230042.27E-30
UCSIUPHAREIF4EBP1FKBP1A0.824229072.02E-31
UCSIUPHAREIF4EBP1PRMT10.8242334032.02E-31
UCSIUPHAREIF4EBP1SIRT60.8349701936.45E-33
UCSTFEIF4EBP1ZNF7870.8075559782.73E-29
UCSTFEIF4EBP1ZNF5110.8127424286.25E-30
UCSTFEIF4EBP1NME20.8351695536.04E-33
UCSTSGEIF4EBP1BRMS10.8045325726.31E-29
UCSTSGEIF4EBP1SLC39A40.8162230042.27E-30
UCSTSGEIF4EBP1GADD45GIP10.8213011894.96E-31
UCSTSGEIF4EBP1PYCARD0.8227135523.22E-31
UCSTSGEIF4EBP1NME10.825499211.36E-31
UCSTSGEIF4EBP1SIRT60.8349701936.45E-33
UVMCell metabolism geneEIF4EBP1SLC25A10.8001004455.45E-19
UVMEpifactorEIF4EBP1RUVBL20.8047326642.40E-19
UVMEpifactorEIF4EBP1PELP10.8263298173.85E-21
UVMEpifactorEIF4EBP1C17orf490.8301007351.77E-21
UVMIUPHAREIF4EBP1SLC25A10.8001004455.45E-19
UVMIUPHAREIF4EBP1SLC25A390.8035434562.97E-19
UVMIUPHAREIF4EBP1SCYL10.8111153987.49E-20
UVMKinaseEIF4EBP1SCYL10.8111153987.49E-20
UVMTSGEIF4EBP1SCYL10.8111153987.49E-20


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
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* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
COADEIF4EBP1EIF4E2-1.67678661860690.000144809484481812
BRCAEIF4EBP1EIF4E2-1.812996007152690.000370278590179521
LUADEIF4EBP1EIF4E2-1.751690256152150.000823732994424591
THCAEIF4EBP1FKBP1A-2.886882288112740.00088455514534471
BRCAEIF4EBP1RHEB-1.344236163023940.00103883851257192
CHOLEIF4EBP1RPTOR-2.343171879166640.00390625
KICHEIF4EBP1EIF4G1-1.466560811507430.00612920522689819
BLCAEIF4EBP1FKBP1A-2.745009587484620.0061798095703125
KICHEIF4EBP1RHEB1.831913152291710.0236499309539795
LUADEIF4EBP1AKT1-4.537144606963410.0301695351050489
LUADEIF4EBP1MLST8-1.00674335556271.03207777888518e-06
KIRCEIF4EBP1EIF4E2-4.194730408955771.04336657477644e-05
BRCAEIF4EBP1MLST8-1.863044431273591.06372586581501e-16
BRCAEIF4EBP1AKT1S1-1.367739254187231.24224675305145e-11
LUSCEIF4EBP1MLST8-2.070593114745443.67421243367441e-07
LIHCEIF4EBP1AKT1S11.827719410016614.2584580238307e-05
LIHCEIF4EBP1FKBP1A-1.091818381135954.43935944712054e-05
PRADEIF4EBP1RHEB1.548708355869214.59461327401057e-05
KICHEIF4EBP1EIF4E1.616752105626716.55651092529297e-06
LIHCEIF4EBP1RPTOR-4.363622704361356.64579404273587e-07
PRADEIF4EBP1MTOR2.457673762698948.16442831201447e-07


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with EIF4EBP1
CHTF8, EIF4E, UBAC1, ATM, MTOR, LRPAP1, PPP2R2A, Mtor, RPTOR, MEC1, GSK3B, IRAK4, PRKCA, KLHL25, MAPK1, AGO2, LRRK2, MAPK14, STK3, PPP2R4, PRKDC, LATS1, SLMAP, MLST8, REL, TCF4, AKT2, AKT3, CCDC94, CHMP2A, DDX1, FLNB, GGA1, HNRNPA1, SHMT2, HNRNPAB, AKT1, BUB1, MAPKAPK5, TRIM25, TRIM14, TOR1, RICTOR, MEOX1, PICK1, POU6F2, LMO2, EIF4E2, DDIT4L, EIF4E1B, ZNF655, EIF4G1, EIF4EBP2, EIF4ENIF1, EIF4G3, EIF4A2, EIF3B, EIF3D, EIF3C, EIF3L, EIF3I, EIF3K, EIF3H, EIF3G, EIF3A, EIF3M, EIF3E, ANGEL1, RPS27L, EIF3F, CRMP1, FBXO11, CARM1, PCBP3, BTBD1,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo
EIF4EBP1chr837914738GAsingle_nucleotide_variantBenignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
EIF4EBP1SKCMchr83791462037914620GAMissense_Mutationp.R56Q4
EIF4EBP1HNSCchr83791465437914654GTSilentp.V67V3
EIF4EBP1SKCMchr83791467237914672GASilentp.R73R2
EIF4EBP1ESCAchr83791477837914778GAMissense_Mutationp.G109S2
EIF4EBP1ESCAchr83791477837914778GAMissense_Mutation2
EIF4EBP1STADchr83791462037914620GAMissense_Mutation2
EIF4EBP1ESCAchr83791477837914778GASplice_Sitep.G109_splice2
EIF4EBP1STADchr83791461937914619CTMissense_Mutationp.R56W2
EIF4EBP1KIRPchr83791466637914666CASilent2
EIF4EBP1BLCAchr83791471037914710GAMissense_Mutationp.S86N2
EIF4EBP1HNSCchr83791465437914654GTSilent1
EIF4EBP1STADchr83791477337914773CTMissense_Mutationp.A107V1
EIF4EBP1HNSCchr83791477837914778GTMissense_Mutationp.G109C1
EIF4EBP1LIHCchr83791465137914651TCSilent1
EIF4EBP1LIHCchr83791472637914726G-Frame_Shift_Del1
EIF4EBP1BLCAchr83791471037914710GAMissense_Mutation1
EIF4EBP1LUSCchr83791460937914609CTSilentp.I52I1

check buttonCopy number variation (CNV) of EIF4EBP1
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across EIF4EBP1
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
102758LIHCTCGA-KR-A7K8-01AASPHchr862430087-EIF4EBP1chr837914599+
102758N/ABF437073BAZ1Bchr772866832+EIF4EBP1chr837914456-
102758SARCTCGA-DX-A3LSC12orf65chr12123718078+EIF4EBP1chr837914598+
102758SARCTCGA-DX-A3LS-01AC12orf65chr12123718078+EIF4EBP1chr837914599+
102758LUSCTCGA-85-8070-01ADDHD2chr838111236+EIF4EBP1chr837914599+
81064BRCATCGA-C8-A1HN-01AEIF4EBP1chr837888236+ADAM12chr10127734701-
99193SARCTCGA-LI-A67I-01AEIF4EBP1chr837888236+ADAM18chr839564309+
99205LIHCTCGA-XR-A8TG-01AEIF4EBP1chr837914778+GPR124chr837672414+
89687BRCATCGA-E2-A106-01AEIF4EBP1chr837888236+POLR1Dchr1328312844+
99221HNSCTCGA-CR-7364-01AEIF4EBP1chr837888236+TACC1chr838704217+
71465N/ABG576403EIF4EBP1chr837917883+ZNF705Dchr811949437-
102758BRCATCGA-S3-AA12GTF2E2chr830510949-EIF4EBP1chr837914598+
102758BRCATCGA-S3-AA12-01AGTF2E2chr830510950-EIF4EBP1chr837914599+
102758LUSCTCGA-43-2576HS6ST3chr1396743823+EIF4EBP1chr837914598+
102758LUSCTCGA-43-2576-01AHS6ST3chr1396743823+EIF4EBP1chr837914599+
102758BRCATCGA-A7-A0D9-01ALRRC28chr1599901716+EIF4EBP1chr837914599+
102758PRADTCGA-FC-A4JINCOA2chr871315934-EIF4EBP1chr837914598+
102758PRADTCGA-FC-A4JI-01ANCOA2chr871315935-EIF4EBP1chr837914599+
102758BRCATCGA-AO-A0JIPPP2R5Cchr14102252520+EIF4EBP1chr837914598+
102758N/AAX185526RP11-567N4.2chr476324594-EIF4EBP1chr837890283-
102758STADTCGA-CD-8530-01ARPL7Achr9136215897+EIF4EBP1chr837914599+
102758N/ABG575369RSL1D1chr1611931212-EIF4EBP1chr837894893-
102758STADTCGA-CD-A486-01ATPTEP1chr2217083105+EIF4EBP1chr837914599+
102758PRADTCGA-J9-A8CP-01AUNC5Dchr835093405-EIF4EBP1chr837914599+
102758BRCATCGA-AR-A5QQZNF703chr837553740+EIF4EBP1chr837914598+
102758BRCATCGA-AR-A5QQ-01AZNF703chr837553739+EIF4EBP1chr837914598+
102758BRCATCGA-AR-A5QQ-01AZNF703chr837553740+EIF4EBP1chr837914599+


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
MESOEIF4EBP10.0007543244712588320.021

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
LUADEIF4EBP13.41549495983401e-050.0011
SARCEIF4EBP10.0001939847896283570.0062

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source
C0022665Kidney Neoplasm1CTD_human
C0023467Leukemia, Myelocytic, Acute1CTD_human
C0026998Acute Myeloid Leukemia, M11CTD_human
C0282313Condition, Preneoplastic1CTD_human
C0334634Malignant lymphoma, lymphocytic, intermediate differentiation, diffuse1CTD_human
C0740457Malignant neoplasm of kidney1CTD_human
C0751958Lymphoma, Lymphocytic, Intermediate1CTD_human
C1879321Acute Myeloid Leukemia (AML-M2)1CTD_human
C4505456HIV Coinfection1CTD_human