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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: RPL11 (NCBI Gene ID:6135)


Gene Summary

check button Gene Summary
Gene InformationGene Name: RPL11
Gene ID: 6135
Gene Symbol

RPL11

Gene ID

6135

Gene Nameribosomal protein L11
SynonymsDBA7|GIG34|L11|uL5
Cytomap

1p36.11

Type of Geneprotein-coding
Description60S ribosomal protein L11CLL-associated antigen KW-12cell growth-inhibiting protein 34large ribosomal subunit protein uL5
Modification date20200327
UniProtAcc

P62913


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0005840Ribosome
GO:0002181Cytoplasmic translation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneRPL11

GO:0002181

cytoplasmic translation

25957688

HgeneRPL11

GO:0010628

positive regulation of gene expression

18560357

HgeneRPL11

GO:2000435

negative regulation of protein neddylation

18560357



check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25
RPL11>1119.25


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Translation Studies in PubMed

check button We searched PubMed using 'RPL11[title] AND translation [title] AND human.'
GeneTitlePMID
RPL11Loss of tumor suppressor RPL5/RPL11 does not induce cell cycle arrest but impedes proliferation due to reduced ribosome content and translation capacity24061479


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
all structure

check buttonExpression level of gene isoforms across TCGA pancancer
all structure

check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
KIRCRPL11-5.475368488681516.13619476098216e-10


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through copy number variation of Translation factor
all structure
Cancer typeGeneCoefficientPvalue
UVMRPL11-0.1872252780.000203145
SARCRPL11-0.1228627820.019352662

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with RPL11 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
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Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
DLBCCell metabolism geneRPL11PFDN50.8260712934.90E-13
DLBCCell metabolism geneRPL11SNRPD20.8350416191.61E-13
DLBCCell metabolism geneRPL11FAU0.8436846015.14E-14
DLBCCGCRPL11NACA0.8359591051.43E-13
DLBCTSGRPL11GNB2L10.8550184731.04E-14
KICHTSGRPL11GAS50.8076183214.01E-22
KIRPCell metabolism geneRPL11FAU0.8152371023.86E-78
LGGEpifactorRPL11FBL0.8581182985.63E-155
PRADCell metabolism geneRPL11TOMM70.8143885971.29E-131
PRADCell metabolism geneRPL11SNRPD20.8322677191.64E-142
PRADCell metabolism geneRPL11FAU0.8446203098.05E-151
PRADCGCRPL11NACA0.8431168559.03E-150
PRADEpifactorRPL11FBL0.8679680031.03E-168
PRADTSGRPL11GLTSCR20.8020134319.63E-125
PRADTSGRPL11GAS50.8025394775.03E-125
PRADTSGRPL11GNB2L10.8633506356.50E-165
THCACell metabolism geneRPL11SNRPD20.8403949659.27E-154
THCACell metabolism geneRPL11FAU0.8613771818.20E-170
THCACell metabolism geneRPL11PFDN50.8760107131.17E-182
THCACGCRPL11NACA0.8252637471.46E-143
THCAEpifactorRPL11FBL0.8435216745.33E-156
THCATSGRPL11GNB2L10.8144420867.43E-137
THYMCell metabolism geneRPL11POLR2I0.8034668858.46E-29
THYMCell metabolism geneRPL11SSR20.8035767068.21E-29
THYMCell metabolism geneRPL11PSMC30.8061599284.03E-29
THYMCell metabolism geneRPL11TIMM130.8068947693.28E-29
THYMCell metabolism geneRPL11POLR2J0.8083376982.19E-29
THYMCell metabolism geneRPL11SLC27A50.8135542444.95E-30
THYMCell metabolism geneRPL11TIMM8B0.8209581455.50E-31
THYMCell metabolism geneRPL11POLR2F0.8210417635.37E-31
THYMCell metabolism geneRPL11UROD0.8211888345.13E-31
THYMCell metabolism geneRPL11IDH3G0.8267870449.09E-32
THYMCell metabolism geneRPL11PSMB70.8295082113.83E-32
THYMCell metabolism geneRPL11DPM20.8309639352.40E-32
THYMCell metabolism geneRPL11SNRPD30.8311484712.26E-32
THYMCell metabolism geneRPL11APRT0.8313504222.12E-32
THYMCell metabolism geneRPL11SNRPD20.839754111.28E-33
THYMCell metabolism geneRPL11PGLS0.8437987593.15E-34
THYMCell metabolism geneRPL11PFDN50.8511024882.23E-35
THYMCell metabolism geneRPL11FAU0.8994876115.73E-45
THYMCGCRPL11TFPT0.801194651.57E-28
THYMEpifactorRPL11TFPT0.801194651.57E-28
THYMEpifactorRPL11SIRT60.8033192348.80E-29
THYMEpifactorRPL11INO80E0.8085646492.06E-29
THYMEpifactorRPL11BRMS10.810990261.03E-29
THYMEpifactorRPL11PRPF310.8258477721.22E-31
THYMEpifactorRPL11C17orf490.8290989854.37E-32
THYMEpifactorRPL11DMAP10.8309086292.44E-32
THYMEpifactorRPL11FBL0.8346969267.06E-33
THYMEpifactorRPL11ZNHIT10.8348189846.78E-33
THYMEpifactorRPL11TAF100.844768952.23E-34
THYMIUPHARRPL11SIRT60.8033192348.80E-29
THYMIUPHARRPL11SLC27A50.8135542444.95E-30
THYMTFRPL11THAP70.8011449541.59E-28
THYMTFRPL11THYN10.8204277446.46E-31
THYMTFRPL11THAP30.8257826681.25E-31
THYMTFRPL11ZNF4280.8268325328.96E-32
THYMTSGRPL11GABARAP0.8001587282.07E-28
THYMTSGRPL11SIRT60.8033192348.80E-29
THYMTSGRPL11TSSC40.8055425634.78E-29
THYMTSGRPL11BRMS10.810990261.03E-29
THYMTSGRPL11PARK70.8285636455.18E-32
THYMTSGRPL11GLTSCR20.8694125841.50E-38
THYMTSGRPL11GNB2L10.8897416591.10E-42
UCSCell metabolism geneRPL11POLR2I0.8034668858.46E-29
UCSCell metabolism geneRPL11SSR20.8035767068.21E-29
UCSCell metabolism geneRPL11PSMC30.8061599284.03E-29
UCSCell metabolism geneRPL11TIMM130.8068947693.28E-29
UCSCell metabolism geneRPL11POLR2J0.8083376982.19E-29
UCSCell metabolism geneRPL11SLC27A50.8135542444.95E-30
UCSCell metabolism geneRPL11TIMM8B0.8209581455.50E-31
UCSCell metabolism geneRPL11POLR2F0.8210417635.37E-31
UCSCell metabolism geneRPL11UROD0.8211888345.13E-31
UCSCell metabolism geneRPL11IDH3G0.8267870449.09E-32
UCSCell metabolism geneRPL11PSMB70.8295082113.83E-32
UCSCell metabolism geneRPL11DPM20.8309639352.40E-32
UCSCell metabolism geneRPL11SNRPD30.8311484712.26E-32
UCSCell metabolism geneRPL11APRT0.8313504222.12E-32
UCSCell metabolism geneRPL11SNRPD20.839754111.28E-33
UCSCell metabolism geneRPL11PGLS0.8437987593.15E-34
UCSCell metabolism geneRPL11PFDN50.8511024882.23E-35
UCSCell metabolism geneRPL11FAU0.8994876115.73E-45
UCSCGCRPL11TFPT0.801194651.57E-28
UCSEpifactorRPL11TFPT0.801194651.57E-28
UCSEpifactorRPL11SIRT60.8033192348.80E-29
UCSEpifactorRPL11INO80E0.8085646492.06E-29
UCSEpifactorRPL11BRMS10.810990261.03E-29
UCSEpifactorRPL11PRPF310.8258477721.22E-31
UCSEpifactorRPL11C17orf490.8290989854.37E-32
UCSEpifactorRPL11DMAP10.8309086292.44E-32
UCSEpifactorRPL11FBL0.8346969267.06E-33
UCSEpifactorRPL11ZNHIT10.8348189846.78E-33
UCSEpifactorRPL11TAF100.844768952.23E-34
UCSIUPHARRPL11SIRT60.8033192348.80E-29
UCSIUPHARRPL11SLC27A50.8135542444.95E-30
UCSTFRPL11THAP70.8011449541.59E-28
UCSTFRPL11THYN10.8204277446.46E-31
UCSTFRPL11THAP30.8257826681.25E-31
UCSTFRPL11ZNF4280.8268325328.96E-32
UCSTSGRPL11GABARAP0.8001587282.07E-28
UCSTSGRPL11SIRT60.8033192348.80E-29
UCSTSGRPL11TSSC40.8055425634.78E-29
UCSTSGRPL11BRMS10.810990261.03E-29
UCSTSGRPL11PARK70.8285636455.18E-32
UCSTSGRPL11GLTSCR20.8694125841.50E-38
UCSTSGRPL11GNB2L10.8897416591.10E-42


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
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* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
KIRPRPL11RPL18A-1.516513928088850.00016188295558095
KICHRPL11RPS27A1.753966937859560.000187873840332031
KIRPRPL11RPS16-1.359570436175170.00019507110118866
KIRPRPL11RPS11-1.018615705651030.00105937570333481
LIHCRPL11RPL8-4.845882849745580.00110314154326131
PRADRPL11RPL18A1.406001757484990.00205137828390396
KICHRPL11RPL191.369011828940890.00250792503356934
KICHRPL11RPS121.269973817584310.00308787822723389
LIHCRPL11MDM2-1.570823103330190.00323738381247511
LUADRPL11RPL19-1.313980266157250.00993159558412698
THCARPL11RPS16-6.163227981565770.0115764821363307
STADRPL11MDM2-1.993126504855590.0132303284481168
BLCARPL11RPS12-1.478046734404210.0204124450683594
BLCARPL11RPS27A-1.047474700691880.0258216857910156
COADRPL11RPS111.353075489982040.0312207043170929
LUSCRPL11RPL19-2.146698895166660.044366810398747
KIRCRPL11RPL19-2.734852712766761.33980982873695e-10
BRCARPL11RPS12-4.912393274782441.85340619742495e-09
KIRPRPL11RPL37-1.174216219471392.26888805627823e-05
KIRCRPL11RPL35-1.064752380593922.72286325678163e-08
KIRCRPL11RPL8-1.182524599717735.64962994208288e-07
KIRPRPL11RPL8-1.530036923501196.0301274061203e-05
KIRCRPL11RPS16-1.661498698893847.8509870430991e-09
BRCARPL11RPS27A-4.285121482004247.8788217967112e-14
KIRCRPL11RPL37-2.871988220584648.03913394748564e-12
KIRPRPL11RPL35-1.529811019754969.0546440333128e-05
KIRCRPL11RPL18A-4.430793049608439.2516163152192e-11


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with RPL11
PML, MDM2, CDKN2A, TP53, BLMH, RPL23, RPL5, MYC, AGO4, NOP56, EBNA-LP, RAD21, ARRB2, CUL3, CUL4A, CUL4B, CUL5, CUL2, CDK2, CUL1, COPS5, COPS6, CAND1, NEDD8, RPL10A, RPL12, RPL13, RPL14, RPL15, RPL18A, RPL18, RPL19, RPL21, RPL23A, RPL24, RPL27A, RPL31, RPL37A, RPL6, RPL7A, RPL7, RPL9, RPS11, RPS12, RPS13, RPS14, RPS15A, RPS16, RPS20, RPS23, RPS24, RPS25, RPS28, RPS2, RPS3, RPS4X, RPS6, RPS8, RPSA, RPL30, RPS3A, RPS5, RPS19, RPL4, RPS7, RPL22, RPS26, RPLP1, RPL36, RPL8, RPLP0, RPL3, RPS9, RPL10, RPL35, RPS10, RPL38, RPL17, RPS21, EEF1A1, RPS27A, EEF2, GNL3, FBL, ILF3, ILF2, SLC25A5, NCL, NHP2L1, TUFM, HNRNPM, NOP58, NAP1L1, NOLC1, RPS27L, NOP2, MRPL12, BTF3, ANXA2, RPL10L, RPLP0P6, RRS1, NIFK, UQCRB, NEMF, UPF1, RBM8A, ESR1, LIG4, FMNL1, PA2G4, FN1, VCAM1, UBL4A, ITGA4, PELP1, VHL, PAN2, CD81, IGSF8, ICAM1, MYEOV2, ARFGAP1, PAIP2, STAT3, HP, IGF1R, C12orf5, TARDBP, QRICH1, ZBTB1, AURKA, CEP57, CEP250, TUBGCP2, TUBGCP3, FUS, CAMK2B, KRT40, KRTAP10-7, CUL7, OBSL1, CCDC8, EED, SURF2, BRIX1, FAU, MRPL24, MRPS10, MRPS7, PAK1IP1, DDX18, DDX24, EBNA1BP2, KPNA6, KRR1, PABPC1, POLR1B, RPL13A, RPL27, RPLP2, RPS15, RPL32, RPL35A, RPL3L, RPS18, LOC101929876, RPS27, APP, HSPB2, gag, AHSA1, HNRNPU, NPM1, Eif3a, Eif3e, Rpl35, Srp72, Naa50, Rrbp1, Brwd3, TP73, MCM2, Mdm2, ZNF618, RC3H1, GRWD1, CDC73, CHIT1, CNBP, ALDH2, TUBA1A, CYLD, INO80B, TRIM25, HEY1, BRCA1, LMNA, MTF1, ARL2, BDP1, DCTN4, DUT, EIF4G2, LEO1, PSMD4, SNAPC1, UBA2, ZNHIT6, FBXO7, GLTSCR2, PCBP1, ACO2, API5, BMP4, CTNNB1, GSK3A, TGFB1, YAF2, YAP1, PRPF8, EFTUD2, AAR2, PIH1D1, CHD3, CHD4, LARP7, TNF, SPDL1, RIOK1, HEXIM1, MEPCE, RNF123, SNAI1, AGR2, RECQL4, WWP1, GPC1, REST, ZFP36L2, ATM, Prkaa1, Prkab1, RPS6KB2, SENP1, UBE2I, METTL14, RC3H2, PHB, RBX1, USP14, NR2C2, PPP1CC, CTCF, KRAS, VRK1, VRK3, HIST1H4A, SNRNP70, ITFG1, ARAF, HMGB1, PPP1CA, STAU1, NFX1, WWP2, SOX2, PARK2, CMTR1, OSBPL3, DVL3, IP6K1, ARIH2, PLEKHA4, PINK1, TFCP2, FANCD2, HCVgp1, PCAT1, ZC3H18, PTPN6, MED6, TIPARP, SNIP1, M, nsp4, nsp6, ORF7a, MAP1LC3B, SMC1A, SMC3, STAG2, WAPAL, MAU2, CPEB4, NEK4, DUX4, CIT, ANLN, AURKB, CHMP4B, CHMP4C, ECT2, KIF14, MAD2L2, KIF20A, KIF23, PRC1, FASN, LRRC59, INS, NDN, Rnf183, BRD4, NINL, RBM45, Apc2, RBM39, FBP1, RIN3, OGT, SPOP, UFL1, DDRGK1, DHFRL1, TRIM37, ATG3, FZR1, PAGE4, NUDCD2, NAA40, ZBTB2, GLYR1, GLE1, ZNF771, ADARB1, NVL, NMNAT1, REPIN1, DDX21, SURF6, FTSJ3, GZF1, HEATR3, KIAA0020, MDM4, RBM34, CENPU, RPL36AL, WHSC1, ZNF184, NOC3L, DDX31, ZNF888, RPL28, HIST2H2BF, ZCCHC7, ZNF689, PAPD5, ZNF354A, ZBTB10, ZNF48, TAF1D, GNL2, HP1BP3, NSA2, GTPBP4, PPAN-P2RY11, USP42, RSL24D1, RBM28, PRDM15, ZNF770, ZNF668, UTP23, TTF1, RRP8, ZNF724P, DDX27, AATF, MAGEB2, KBTBD6, NIP7, HIST1H1E, NOC2L, DKC1, NKRF, SDAD1, RBMX2, LYAR, KNOP1, RPL7L1, DDX54, DDX56, RPL26, RSL1D1, ZC3HAV1, LUC7L, HIST1H1T, RPL26L1, PRPF4B, ZNF512, RRP1B, BMS1, EPB41L5, SRPK2, SRP72, FAM111A, IMP3, NOM1, RNH1, WDR74, GAR1, ZNF768, BUD13, RSBN1, UTP3, NOL12, SRP68, PRKRA, CEBPZ, DDX50, TRIP12, FCF1, ABT1, NPM3, IMP4, CCDC137, TRIM56, PBRM1, DHX30, DDX51, NGDN, NOP16, C1orf35, EPB41L4B, NEIL1, RPF2, ZNF346, SRSF5, DDX10, C8orf33, C7orf50, CDC5L, ZBTB11, ZNF574, GPATCH4, BOP1, ZFR, RRP15, MYBBP1A, CCDC59, TAF1C, HIST2H2AB, RPF1, CCDC86, MAK16, LIN28A, MPHOSPH10, SPRTN, FBXW7, NLRP7, nsp1, RCHY1, CCNF, N, PSMD9, PIGR,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo
RPL11chr124018205CTsingle_nucleotide_variantBenignnot_provided
RPL11chr124018224CTsingle_nucleotide_variantBenignnot_provided
RPL11chr124018277CGsingle_nucleotide_variantBenignDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_7SO:0001623|5_prime_UTR_variantSO:0001623|5_prime_UTR_variant
RPL11chr124018300TCsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemia_7SO:0001623|5_prime_UTR_variantSO:0001623|5_prime_UTR_variant
RPL11chr124018317GTsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001583|missense_variantSO:0001583|missense_variant
RPL11chr124018318CTsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001583|missense_variantSO:0001583|missense_variant
RPL11chr124018327GCsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124018338GTsingle_nucleotide_variantLikely_benignnot_specifiedSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124018369GTsingle_nucleotide_variantBenignnot_specifiedSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124018387GTsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124018953TCsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124018965TGsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124018999TCsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124019079GTsingle_nucleotide_variantBenign/Likely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124019089CTsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124019098GTsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001574|splice_acceptor_variant,SO:0001627|intron_variantSO:0001574|splice_acceptor_variant,SO:0001627|intron_variant
RPL11chr124019106AGsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001583|missense_variantSO:0001583|missense_variant
RPL11chr124019116GAsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124019122CTsingle_nucleotide_variantBenign/Likely_benignDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_7|not_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124019125CTsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124019133AACTTCGCADeletionPathogenicDiamond-Blackfan_anemia_7SO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124019149ACTAMicrosatellitePathogenicDiamond-Blackfan_anemia_7SO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124019152CTGCDeletionPathogenicDiamond-Blackfan_anemiaSO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124019194GAsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_7SO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124019194GCsingle_nucleotide_variantBenignDiamond-Blackfan_anemia|not_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124019198GCGDeletionPathogenicDiamond-Blackfan_anemiaSO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124019201GCGDeletionPathogenicDiamond-Blackfan_anemiaSO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124019207GGTDuplicationPathogenicnot_providedSO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124019209GAsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemia|not_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124019213GTsingle_nucleotide_variantPathogenicDiamond-Blackfan_anemiaSO:0001587|nonsenseSO:0001587|nonsense
RPL11chr124019231AACCDuplicationLikely_pathogenicReticulocytopenia|AnemiaSO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124019234CCTCDeletionPathogenicnot_providedSO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124019245CTsingle_nucleotide_variantBenignDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_7SO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124020290CGsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124020290CTsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemia_7SO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124020296GAsingle_nucleotide_variantPathogenicDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_7SO:0001574|splice_acceptor_variantSO:0001574|splice_acceptor_variant
RPL11chr124020298TTADuplicationPathogenicDiamond-Blackfan_anemiaSO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124020310CGsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124020328GAsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124020341ATADeletionPathogenicDiamond-Blackfan_anemia_7SO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124020342TCsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001583|missense_variantSO:0001583|missense_variant
RPL11chr124020362CTsingle_nucleotide_variantPathogenicDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_7|not_providedSO:0001587|nonsenseSO:0001587|nonsense
RPL11chr124020363GAsingle_nucleotide_variantUncertain_significanceInborn_genetic_diseasesSO:0001583|missense_variantSO:0001583|missense_variant
RPL11chr124020397TGsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemia|not_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124020404GAsingle_nucleotide_variantLikely_pathogenicDiamond-Blackfan_anemiaSO:0001575|splice_donor_variantSO:0001575|splice_donor_variant
RPL11chr124020412ATsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemia_7SO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124020470AGsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124021154GAsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001583|missense_variantSO:0001583|missense_variant
RPL11chr124021155GAsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemia_7SO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124021172AGsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemia_7SO:0001583|missense_variantSO:0001583|missense_variant
RPL11chr124021178ACTTADeletionUncertain_significancenot_specifiedSO:0001822|inframe_deletionSO:0001822|inframe_deletion
RPL11chr124021182CGsingle_nucleotide_variantUncertain_significancenot_providedSO:0001583|missense_variantSO:0001583|missense_variant
RPL11chr124021185AGsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124021191TCsingle_nucleotide_variantConflicting_interpretations_of_pathogenicityDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_7SO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124021224CTsingle_nucleotide_variantBenignDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_7|not_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124021228CTsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL11chr124021290AGsingle_nucleotide_variantBenignDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_7SO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124021403TCTCTMicrosatelliteBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124022284AGsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemia|not_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124022286AGsingle_nucleotide_variantLikely_pathogenicnot_providedSO:0001574|splice_acceptor_variantSO:0001574|splice_acceptor_variant
RPL11chr124022334CCAGDuplicationUncertain_significancenot_specifiedSO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124022343TCsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001583|missense_variantSO:0001583|missense_variant
RPL11chr124022345GAsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001583|missense_variantSO:0001583|missense_variant
RPL11chr124022352AACAMicrosatellitePathogenicDiamond-Blackfan_anemia_7SO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124022365CAACDeletionPathogenicDiamond-Blackfan_anemia_7SO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL11chr124022368AGAGAMicrosatellitePathogenicDiamond-Blackfan_anemia_7SO:0001822|inframe_deletionSO:0001822|inframe_deletion
RPL11chr124022437AGsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL11chr124022832AGsingle_nucleotide_variantPathogenicDiamond-Blackfan_anemia|Diamond-Blackfan_anemia_7SO:0001574|splice_acceptor_variantSO:0001574|splice_acceptor_variant
RPL11chr124022915AGsingle_nucleotide_variantBenignDiamond-Blackfan_anemia_7|not_providedSO:0001624|3_prime_UTR_variantSO:0001624|3_prime_UTR_variant
RPL11chr124023011CTsingle_nucleotide_variantBenignnot_providedSO:0001624|3_prime_UTR_variantSO:0001624|3_prime_UTR_variant


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
RPL11LUADchr12402118424021184CTMissense_Mutationp.S100L7
RPL11KIRPchr12402120424021204TGMissense_Mutationp.F107V4
RPL11ESCAchr12401912924019129CTMissense_Mutationp.R13W3
RPL11LIHCchr12402236824022368AGSilentp.K159K3
RPL11COADchr12402231524022315GAMissense_Mutationp.A142T3
RPL11ESCAchr12401915624019156CGMissense_Mutationp.L22V3
RPL11ESCAchr12401915624019156CGMissense_Mutation2
RPL11SKCMchr12402031524020315CTMissense_Mutationp.S59F2
RPL11BLCAchr12401913824019138CTMissense_Mutationp.R16C2
RPL11ESCAchr12402122524021225GTMissense_Mutation2
RPL11SKCMchr12401918924019189CAMissense_Mutationp.L33M2
RPL11UVMchr12401922824019229-AGFrame_Shift_Insp.Q46fs2
RPL11BLCAchr12402126024021260CGMissense_Mutationp.I125M2
RPL11PRADchr12401913524019135CTMissense_Mutationp.L15F2
RPL11BLCAchr12402118224021182CTSilentp.F99F2
RPL11GBMchr12401832024018320GCSplice_Sitep.A2_splice2
RPL11PRADchr12402035324020353TCMissense_Mutationp.C72R2
RPL11UCECchr12402232824022328GAMissense_Mutationp.R146H2
RPL11SARCchr12401831624018331GGCGGTGAGTAGCTGG-Splice_Site2
RPL11UCECchr12402283924022839TCSilentp.D1712
RPL11KIRPchr12402114824021148ATSplice_Site1
RPL11UVMchr12401922824019229--Frame_Shift_Ins1
RPL11PAADchr12402234124022341CANonsense_Mutationp.C150*1
RPL11KIRPchr12402120424021204TGMissense_Mutation1
RPL11SKCMchr12402123824021238ACMissense_Mutationp.K118T1
RPL11KIRPchr12402284124022841GTMissense_Mutation1
RPL11UVMchr12401922824019229-AGFrame_Shift_Insp.D46fs1
RPL11PRADchr12402127724021277AGMissense_Mutationp.Y131C1
RPL11SKCMchr12402239024022390CTNonsense_Mutationp.Q167*1
RPL11LIHCchr12402233324022333AGMissense_Mutation1
RPL11BLCAchr12402039124020391GASilentp.E84E1
RPL11GBMchr12401918224019185AGAC-Frame_Shift_Delp.G30fs1
RPL11SKCMchr12402238924022389CTSilentp.F166F1
RPL11BLCAchr12402031324020313AGSilentp.R58R1
RPL11PRADchr12401911224019112A-Frame_Shift_Delp.E7fs1
RPL11HNSCchr12401911924019119GASilent1
RPL11STADchr12401832024018320GTSplice_Site.1
RPL11BLCAchr12401913824019138CTMissense_Mutation1
RPL11LIHCchr12402233324022333AGMissense_Mutationp.T148A1
RPL11CESCchr12402284524022845CTSilent1
RPL11READchr12402127124021271ATMissense_Mutationp.D129V1
RPL11HNSCchr12401911924019119GASilentp.E9E1
RPL11THCAchr12402124724021247CAMissense_Mutation1
RPL11BLCAchr12402118224021182CTSilent1
RPL11LIHCchr12402232724022327CTMissense_Mutationp.R146C1
RPL11CESCchr12402284524022845CTSilentp.I1731
RPL11READchr12402238724022387TCMissense_Mutationp.F166L1
RPL11KICHchr12402126124021261T-Frame_Shift_Del1
RPL11THYMchr12401923524019235CGMissense_Mutationp.P48R1
RPL11BLCAchr12402126024021260CGMissense_Mutation1
RPL11LIHCchr12402039524020395GTMissense_Mutationp.G86C1
RPL11READchr12402284524022845CTSilentp.I173I1
RPL11KICHchr12402126124021261T-Frame_Shift_Delp.I125fs1
RPL11UCECchr12402116924021170-AFrame_Shift_Insp.R95fs1
RPL11BLCAchr12402031324020313AGSilent1
RPL11LUADchr12402120924021209GTSilentp.G108G1
RPL11SARCchr12402126524021265GTMissense_Mutation1
RPL11KIRCchr12402234224022342ATMissense_Mutationp.I151F1
RPL11BLCAchr12401829024018290CTMissense_Mutation1
RPL11ESCAchr12402122524021225GTMissense_Mutationp.D114Y1
RPL11BLCAchr12401910224019102GAMissense_Mutation1
RPL11LUADchr12402116324021163ATMissense_Mutationp.E93V1

check buttonCopy number variation (CNV) of RPL11
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across RPL11
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
97188N/AAA076379AC006460.2chr2191507719+RPL11chr124022908-
97188N/AAA650167AC006460.2chr2191507718+RPL11chr124022908-
97188N/ACV387556ADAMTS2chr5178701856-RPL11chr124018296+
97188N/ABI496666ADNPchr2049506660-RPL11chr124022904-
97188N/ABI491968CASC1chr1225328617+RPL11chr124022908-
97188N/AAU100496FRYLchr448531069+RPL11chr124019132+
97188N/ABG030720KPNB1chr1745761891-RPL11chr124021242+
97188N/ABU598868NAA50chr3113442278-RPL11chr124022297+
97188READTCGA-AG-3882NAIPchr570281590-RPL11chr124019101+
97188BRCATCGA-E2-A1LS-01APTENchr1089705770+RPL11chr124022859+
97188CESCTCGA-EA-A3HU-01APTENchr1089705654+RPL11chr124021153+
97188KIRCTCGA-A3-3382-01APTENchr1089705653+RPL11chr124021205+
97188LAMLTCGA-AB-2854-03APTENchr1089705770+RPL11chr124022324+
97188PRADTCGA-EJ-5512-01APTENchr1089705655+RPL11chr124021153+
97188N/AAA420671RGS6chr1472680908+RPL11chr124022908-
75840N/AAA522625RPL11chr124022908+AC006460.2chr2191507719-
80097N/ABG031525RPL11chr124022908+AGMOchr715175632-
75840SARCTCGA-DX-A8BX-01ARPL11chr124021281+ARMC9chr2232225466+
75840N/ABG033694RPL11chr124022908+C11orf40chr114596738+
75840N/ACD240152RPL11chr124022908+C1Schr127169581+
99549BRCATCGA-D8-A1XZ-01ARPL11chr124022398+CAMTA1chr17805905+
92198N/ABE613010RPL11chr124020323-EPHX1chr1226027547+
101363N/ABG033299RPL11chr124022915+FAM189A1chr1529815797-
95950N/AAV693175RPL11chr124022915+GRIK4chr11120856328+
75840N/AAA447363RPL11chr124022300-KDM5CchrX53222271+
82058N/ABG575204RPL11chr124022915+MORF4L1chr1579153896-
75840N/ACB409379RPL11chr124022397+NDUFB4chr3120321083+
95332N/ABF218124RPL11chr124022883+PAQR5chr1569577797+
102311N/ABM013660RPL11chr124022908+PARD3chr1034685269+
98891UCECTCGA-AP-A054-01ARPL11chr124020403+PDE6Achr5149246797-
75840UCSTCGA-ND-A4WC-01ARPL11chr124020403+PNRC2chr124287419+
95629N/ABI858658RPL11chr124022908+PRR5-ARHGAP8chr2245168133-
98789N/AEC486423RPL11chr124022398+PTENchr1089705718+
95238N/AAA523674RPL11chr124022908+RNF138chr1829674180-
97188N/AAA876625RPL11chr124022330+RPL11chr124022384-
97188N/ABQ310852RPL11chr124019146-RPL11chr124022354-
98682UCECTCGA-AJ-A3EJ-01ARPL11chr124022915-SIAEchr11124543777-
75840N/AAU134575RPL11chr124022367+STRN4chr1947228158-
101954N/ABP280989RPL11chr124021281+TCEB3chr124075511+
97303N/ACD388242RPL11chr124020406+TKTchr353259752-
75840N/ACN269184RPL11chr124022336+TMCO6chr5140021281+
75840STADTCGA-BR-8676-01ARPL11chr124022908+ZNF747chr1630542803-
97188STADTCGA-IN-7808-01ASF3B2chr1165828202+RPL11chr124022288+
97188Non-Cancer131NdSNHG1chr1162622895-RPL11chr124022287+
97188N/ABE044946SUN2chr2239159587+RPL11chr124022908-
97188N/ABG272717THADAchr243731343+RPL11chr124022912-
97189N/AAA483472USP12chr1327727077-RPL11chr124022904-


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
SARCRPL110.007305986657574070.2
BRCARPL110.01956533562601410.53

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
LGGRPL110.003359555299481940.11
BRCARPL110.0003283028733516860.011

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
P62913DB02494(S)-3-phenyllactic acidSmall moleculeExperimental
P62913DB07374AnisomycinSmall moleculeExperimental
P62913DB08437PuromycinSmall moleculeExperimental
P62913DB02494(S)-3-phenyllactic acid
P62913DB07374Anisomycin
P62913DB08437Puromycin

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source
C1260899Anemia, Diamond-Blackfan4GENOMICS_ENGLAND
C2675512Diamond-Blackfan Anemia 73CTD_human;GENOMICS_ENGLAND;UNIPROT
C0431890Hypoplasia of thumb2GENOMICS_ENGLAND
C0376358Malignant neoplasm of prostate1CTD_human