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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: RPL19 (NCBI Gene ID:6143)


Gene Summary

check button Gene Summary
Gene InformationGene Name: RPL19
Gene ID: 6143
Gene Symbol

RPL19

Gene ID

6143

Gene Nameribosomal protein L19
SynonymsL19
Cytomap

17q12

Type of Geneprotein-coding
Description60S ribosomal protein L19large ribosomal subunit protein eL19
Modification date20200313
UniProtAcc

P84098


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0005840Ribosome
GO:0002181Cytoplasmic translation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneRPL19

GO:0002181

cytoplasmic translation

25957688



check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25
RPL19>1119.25


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Translation Studies in PubMed

check button We searched PubMed using 'RPL19[title] AND translation [title] AND human.'
GeneTitlePMID
RPL19..


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF
ENST000002254303735856937358692In-frame
ENST000002254303735924137359362Frame-shift
ENST000002254303736032937360440In-frame

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)
ENST0000022543037358569373586927491752971963778
ENST000002254303736032937360440749419529196119155

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.
P840981191551196ChainID=PRO_0000131169;Note=60S ribosomal protein L19
P8409837781196ChainID=PRO_0000131169;Note=60S ribosomal protein L19
P8409837783838Modified residueNote=Citrulline;Ontology_term=ECO:0000250;evidence=ECO:0000250


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
all structure

check buttonExpression level of gene isoforms across TCGA pancancer
all structure

check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
KICHRPL191.369011828940890.00250792503356934
LUADRPL19-1.313980266157250.00993159558412698
LUSCRPL19-2.146698895166660.044366810398747
KIRCRPL19-2.734852712766761.33980982873695e-10


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a
MESORPL19120.02123448495573250.1847544378698220.227699792099792-0.1893920747923770.506594203793632

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a
CESCRPL19120.01430311888164010.1649990.276581357615894-0.5308607842379-0.0592655524490985
DLBCRPL19120.02966733668548660.1604848484848490.244985897435898-1.21734442060309-0.995069245776846
THYMRPL19120.04100045285743620.1858995073891630.219073319327731-0.145701473892269-0.0336381371782616

check buttonTranslation factor expression regulation through copy number variation of Translation factor
all structure
Cancer typeGeneCoefficientPvalue
UCECRPL190.1278616090.023331786
KICHRPL190.019969910.042866181

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with RPL19 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
all structure
Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
CHOLCGCRPL19NACA0.8174490587.31E-12
CHOLEpifactorRPL19FBL0.8056613292.47E-11
CHOLTSGRPL19GNB2L10.8427196083.88E-13
DLBCCell metabolism geneRPL19TIMM130.8039864695.94E-12
DLBCCell metabolism geneRPL19TOMM220.8056783074.97E-12
DLBCCell metabolism geneRPL19POLR2F0.8120503862.48E-12
DLBCCell metabolism geneRPL19GEMIN70.8218171088.14E-13
DLBCCell metabolism geneRPL19PFDN50.8468806313.32E-14
DLBCCell metabolism geneRPL19SNRPD20.8569297097.80E-15
DLBCCell metabolism geneRPL19TIMM90.8718034887.38E-16
DLBCCell metabolism geneRPL19NME20.8817623951.28E-16
DLBCCell metabolism geneRPL19FAU0.8893944173.01E-17
DLBCCGCRPL19NACA0.8835503029.23E-17
DLBCEpifactorRPL19FBL0.8488444782.52E-14
DLBCTFRPL19ZNF5810.8629418093.11E-15
DLBCTFRPL19NME20.8817623951.28E-16
DLBCTSGRPL19GADD45GIP10.8116787322.59E-12
DLBCTSGRPL19GLTSCR20.8579878736.65E-15
DLBCTSGRPL19GNB2L10.9417277682.12E-23
GBMCell metabolism geneRPL19FAU0.8342546138.13E-46
KICHCell metabolism geneRPL19NME10.810784082.06E-22
KICHCell metabolism geneRPL19PSMB30.8371889764.74E-25
KICHCell metabolism geneRPL19SSR20.8520314649.48E-27
KICHIUPHARRPL19CSNK2B0.8544300184.84E-27
KICHTSGRPL19NME10.810784082.06E-22
KICHTSGRPL19GAS50.8130094871.28E-22
KIRPCell metabolism geneRPL19NME10.8053224877.14E-75
KIRPCell metabolism geneRPL19FAU0.8148242975.33E-78
KIRPCell metabolism geneRPL19NME20.8418067335.81E-88
KIRPCell metabolism geneRPL19SNRPD20.8535137446.92E-93
KIRPCell metabolism geneRPL19PSMB30.8646184695.70E-98
KIRPTFRPL19NME20.8418067335.81E-88
KIRPTSGRPL19NME10.8053224877.14E-75
LGGCell metabolism geneRPL19IMPDH20.8013241326.65E-120
LGGCell metabolism geneRPL19FAU0.9202856932.46E-217
LGGCGCRPL19NACA0.8480444829.93E-148
LGGIUPHARRPL19IMPDH20.8013241326.65E-120
LGGTSGRPL19GAS50.8231087367.47E-132
LGGTSGRPL19GNB2L10.8758488973.35E-169
PAADCell metabolism geneRPL19FAU0.8068617583.07E-43
PCPGCell metabolism geneRPL19PSMB30.8025325882.31E-43
PRADCell metabolism geneRPL19PGLS0.803379251.78E-125
PRADCell metabolism geneRPL19POLR2I0.8086875712.18E-128
PRADCell metabolism geneRPL19POLR2F0.8243814781.49E-137
PRADCell metabolism geneRPL19TIMM90.8289629792.11E-140
PRADCell metabolism geneRPL19SNRPD20.8458942581.02E-151
PRADCell metabolism geneRPL19NME20.8599885573.11E-162
PRADCell metabolism geneRPL19FAU0.8764913754.09E-176
PRADCGCRPL19NACA0.8635203054.74E-165
PRADEpifactorRPL19FBL0.856517141.53E-159
PRADTFRPL19ZNF5240.8103035632.73E-129
PRADTFRPL19NME20.8599885573.11E-162
PRADTSGRPL19GAS50.8160025321.50E-132
PRADTSGRPL19GNB2L10.8868917716.26E-186
TGCTCell metabolism geneRPL19FAU0.8179804678.14E-39
THCACell metabolism geneRPL19POLR2I0.8048440672.90E-131
THCACell metabolism geneRPL19SNRPD20.8587483971.16E-167
THCACell metabolism geneRPL19PFDN50.8740731087.24E-181
THCACell metabolism geneRPL19FAU0.8949126866.71E-202
THCACGCRPL19NACA0.8140858171.21E-136
THCATSGRPL19GNB2L10.8058254278.03E-132
THCATSGRPL19AIP0.8115434233.92E-135
THCATSGRPL19GADD45GIP10.8125020561.06E-135
THYMCell metabolism geneRPL19MTX10.801618451.40E-28
THYMCell metabolism geneRPL19SNRPE0.8019773421.27E-28
THYMCell metabolism geneRPL19FPGS0.8020603891.24E-28
THYMCell metabolism geneRPL19PSMC50.8042114016.90E-29
THYMCell metabolism geneRPL19TXN0.8071774813.03E-29
THYMCell metabolism geneRPL19PSMA40.808331862.20E-29
THYMCell metabolism geneRPL19PSMB10.8083951152.16E-29
THYMCell metabolism geneRPL19TIMM100.8095834681.54E-29
THYMCell metabolism geneRPL19POLR2J0.809920211.40E-29
THYMCell metabolism geneRPL19POLR2F0.8132956155.33E-30
THYMCell metabolism geneRPL19GEMIN70.8144529123.81E-30
THYMCell metabolism geneRPL19DTYMK0.8146620683.58E-30
THYMCell metabolism geneRPL19MTMR140.8157013112.64E-30
THYMCell metabolism geneRPL19PSMB100.816007052.42E-30
THYMCell metabolism geneRPL19PSME10.8160743222.37E-30
THYMCell metabolism geneRPL19PAFAH1B30.8165045192.09E-30
THYMCell metabolism geneRPL19EXOSC40.8185956261.12E-30
THYMCell metabolism geneRPL19SRM0.8196300138.22E-31
THYMCell metabolism geneRPL19LSM50.8199170257.54E-31
THYMCell metabolism geneRPL19HMBS0.8219713734.04E-31
THYMCell metabolism geneRPL19SNRPB0.8252862821.45E-31
THYMCell metabolism geneRPL19EBP0.8272289337.91E-32
THYMCell metabolism geneRPL19POLR2I0.829181424.25E-32
THYMCell metabolism geneRPL19TOMM220.8304021772.87E-32
THYMCell metabolism geneRPL19POLR2H0.8314211222.07E-32
THYMCell metabolism geneRPL19PFDN60.8317970051.83E-32
THYMCell metabolism geneRPL19SNRPD30.8321900541.61E-32
THYMCell metabolism geneRPL19GEMIN60.8348019366.82E-33
THYMCell metabolism geneRPL19ITPA0.8352657415.85E-33
THYMCell metabolism geneRPL19SMPD20.8359670414.63E-33
THYMCell metabolism geneRPL19SNRPD10.8366918983.63E-33
THYMCell metabolism geneRPL19PGLS0.8370739053.19E-33
THYMCell metabolism geneRPL19ACOT80.8379705182.36E-33
THYMCell metabolism geneRPL19TOMM400.8396426741.33E-33
THYMCell metabolism geneRPL19PHKG20.8397291331.30E-33
THYMCell metabolism geneRPL19TIMM500.8400536211.16E-33
THYMCell metabolism geneRPL19SSR20.8404348821.02E-33
THYMCell metabolism geneRPL19SNRPF0.8460780521.40E-34
THYMCell metabolism geneRPL19TIMM130.8464041151.24E-34
THYMCell metabolism geneRPL19LSM40.8464272531.23E-34
THYMCell metabolism geneRPL19EXOSC50.8491604684.58E-35
THYMCell metabolism geneRPL19DGUOK0.8509689692.35E-35
THYMCell metabolism geneRPL19SLC27A50.8535383948.96E-36
THYMCell metabolism geneRPL19LSM20.8544464026.35E-36
THYMCell metabolism geneRPL19EXOSC10.8591918381.01E-36
THYMCell metabolism geneRPL19PSMB70.8603733086.30E-37
THYMCell metabolism geneRPL19APRT0.8674289363.50E-38
THYMCell metabolism geneRPL19PFDN50.8689950611.80E-38
THYMCell metabolism geneRPL19PSMC30.8708003218.27E-39
THYMCell metabolism geneRPL19PSMD130.8769490215.37E-40
THYMCell metabolism geneRPL19PSMB30.8839633221.97E-41
THYMCell metabolism geneRPL19SNRPD20.9037901024.73E-46
THYMCell metabolism geneRPL19TIMM8B0.9055366581.66E-46
THYMCell metabolism geneRPL19FAU0.922091262.62E-51
THYMCGCRPL19TFPT0.8117861448.24E-30
THYMCGCRPL19SDHAF20.8559881583.52E-36
THYMEpifactorRPL19PRMT10.8027154681.04E-28
THYMEpifactorRPL19C17orf490.8043746426.59E-29
THYMEpifactorRPL19SIRT70.8065601773.60E-29
THYMEpifactorRPL19CXXC10.8069343523.25E-29
THYMEpifactorRPL19TFPT0.8117861448.24E-30
THYMEpifactorRPL19EXOSC40.8185956261.12E-30
THYMEpifactorRPL19PRPF310.8226010923.34E-31
THYMEpifactorRPL19CCDC1010.8247308881.73E-31
THYMEpifactorRPL19ZNHIT10.828619925.09E-32
THYMEpifactorRPL19PPM1G0.8303675522.91E-32
THYMEpifactorRPL19NOC2L0.8330238231.23E-32
THYMEpifactorRPL19EXOSC50.8491604684.58E-35
THYMEpifactorRPL19INO80E0.8540735837.32E-36
THYMEpifactorRPL19PPP4C0.8576927981.82E-36
THYMEpifactorRPL19EXOSC10.8591918381.01E-36
THYMEpifactorRPL19SS18L20.8599078757.59E-37
THYMEpifactorRPL19RUVBL20.8672203373.82E-38
THYMEpifactorRPL19SIRT60.867586373.27E-38
THYMEpifactorRPL19FBL0.8725195533.91E-39
THYMEpifactorRPL19BRMS10.8789195692.16E-40
THYMEpifactorRPL19TAF100.9089353732.04E-47
THYMIUPHARRPL19PRMT10.8027154681.04E-28
THYMIUPHARRPL19SIRT70.8065601773.60E-29
THYMIUPHARRPL19PSMB10.8083951152.16E-29
THYMIUPHARRPL19PPIA0.8324541281.48E-32
THYMIUPHARRPL19SMPD20.8359670414.63E-33
THYMIUPHARRPL19PHKG20.8397291331.30E-33
THYMIUPHARRPL19SLC27A50.8535383948.96E-36
THYMIUPHARRPL19SIRT60.867586373.27E-38
THYMKinaseRPL19PHKG20.8397291331.30E-33
THYMTFRPL19THAP30.802923719.81E-29
THYMTFRPL19IRF30.8034569118.48E-29
THYMTFRPL19CXXC10.8069343523.25E-29
THYMTFRPL19GTF3A0.8073241342.91E-29
THYMTFRPL19ZNF6680.8167427181.94E-30
THYMTFRPL19ZNF5110.8191770619.42E-31
THYMTFRPL19DRAP10.8200187827.31E-31
THYMTFRPL19ZNF4440.8277754066.65E-32
THYMTFRPL19THYN10.8312225982.21E-32
THYMTFRPL19ZNF6880.8430161694.14E-34
THYMTFRPL19ZNF7870.8455660931.68E-34
THYMTFRPL19ZNF4280.8487283835.36E-35
THYMTSGRPL19IRF30.8034569118.48E-29
THYMTSGRPL19PFN10.806607183.56E-29
THYMTSGRPL19ZNF6680.8167427181.94E-30
THYMTSGRPL19TSSC40.8380280332.31E-33
THYMTSGRPL19GADD45GIP10.8424117655.12E-34
THYMTSGRPL19HTRA20.8434381253.57E-34
THYMTSGRPL19AIP0.8463569641.27E-34
THYMTSGRPL19PARK70.8573424232.08E-36
THYMTSGRPL19NPRL20.8602286026.68E-37
THYMTSGRPL19SIRT60.867586373.27E-38
THYMTSGRPL19GNB2L10.8732476492.83E-39
THYMTSGRPL19BRMS10.8789195692.16E-40
THYMTSGRPL19GLTSCR20.8820802774.88E-41
UCSCell metabolism geneRPL19MTX10.801618451.40E-28
UCSCell metabolism geneRPL19SNRPE0.8019773421.27E-28
UCSCell metabolism geneRPL19FPGS0.8020603891.24E-28
UCSCell metabolism geneRPL19PSMC50.8042114016.90E-29
UCSCell metabolism geneRPL19TXN0.8071774813.03E-29
UCSCell metabolism geneRPL19PSMA40.808331862.20E-29
UCSCell metabolism geneRPL19PSMB10.8083951152.16E-29
UCSCell metabolism geneRPL19TIMM100.8095834681.54E-29
UCSCell metabolism geneRPL19POLR2J0.809920211.40E-29
UCSCell metabolism geneRPL19POLR2F0.8132956155.33E-30
UCSCell metabolism geneRPL19GEMIN70.8144529123.81E-30
UCSCell metabolism geneRPL19DTYMK0.8146620683.58E-30
UCSCell metabolism geneRPL19MTMR140.8157013112.64E-30
UCSCell metabolism geneRPL19PSMB100.816007052.42E-30
UCSCell metabolism geneRPL19PSME10.8160743222.37E-30
UCSCell metabolism geneRPL19PAFAH1B30.8165045192.09E-30
UCSCell metabolism geneRPL19EXOSC40.8185956261.12E-30
UCSCell metabolism geneRPL19SRM0.8196300138.22E-31
UCSCell metabolism geneRPL19LSM50.8199170257.54E-31
UCSCell metabolism geneRPL19HMBS0.8219713734.04E-31
UCSCell metabolism geneRPL19SNRPB0.8252862821.45E-31
UCSCell metabolism geneRPL19EBP0.8272289337.91E-32
UCSCell metabolism geneRPL19POLR2I0.829181424.25E-32
UCSCell metabolism geneRPL19TOMM220.8304021772.87E-32
UCSCell metabolism geneRPL19POLR2H0.8314211222.07E-32
UCSCell metabolism geneRPL19PFDN60.8317970051.83E-32
UCSCell metabolism geneRPL19SNRPD30.8321900541.61E-32
UCSCell metabolism geneRPL19GEMIN60.8348019366.82E-33
UCSCell metabolism geneRPL19ITPA0.8352657415.85E-33
UCSCell metabolism geneRPL19SMPD20.8359670414.63E-33
UCSCell metabolism geneRPL19SNRPD10.8366918983.63E-33
UCSCell metabolism geneRPL19PGLS0.8370739053.19E-33
UCSCell metabolism geneRPL19ACOT80.8379705182.36E-33
UCSCell metabolism geneRPL19TOMM400.8396426741.33E-33
UCSCell metabolism geneRPL19PHKG20.8397291331.30E-33
UCSCell metabolism geneRPL19TIMM500.8400536211.16E-33
UCSCell metabolism geneRPL19SSR20.8404348821.02E-33
UCSCell metabolism geneRPL19SNRPF0.8460780521.40E-34
UCSCell metabolism geneRPL19TIMM130.8464041151.24E-34
UCSCell metabolism geneRPL19LSM40.8464272531.23E-34
UCSCell metabolism geneRPL19EXOSC50.8491604684.58E-35
UCSCell metabolism geneRPL19DGUOK0.8509689692.35E-35
UCSCell metabolism geneRPL19SLC27A50.8535383948.96E-36
UCSCell metabolism geneRPL19LSM20.8544464026.35E-36
UCSCell metabolism geneRPL19EXOSC10.8591918381.01E-36
UCSCell metabolism geneRPL19PSMB70.8603733086.30E-37
UCSCell metabolism geneRPL19APRT0.8674289363.50E-38
UCSCell metabolism geneRPL19PFDN50.8689950611.80E-38
UCSCell metabolism geneRPL19PSMC30.8708003218.27E-39
UCSCell metabolism geneRPL19PSMD130.8769490215.37E-40
UCSCell metabolism geneRPL19PSMB30.8839633221.97E-41
UCSCell metabolism geneRPL19SNRPD20.9037901024.73E-46
UCSCell metabolism geneRPL19TIMM8B0.9055366581.66E-46
UCSCell metabolism geneRPL19FAU0.922091262.62E-51
UCSCGCRPL19TFPT0.8117861448.24E-30
UCSCGCRPL19SDHAF20.8559881583.52E-36
UCSEpifactorRPL19PRMT10.8027154681.04E-28
UCSEpifactorRPL19C17orf490.8043746426.59E-29
UCSEpifactorRPL19SIRT70.8065601773.60E-29
UCSEpifactorRPL19CXXC10.8069343523.25E-29
UCSEpifactorRPL19TFPT0.8117861448.24E-30
UCSEpifactorRPL19EXOSC40.8185956261.12E-30
UCSEpifactorRPL19PRPF310.8226010923.34E-31
UCSEpifactorRPL19CCDC1010.8247308881.73E-31
UCSEpifactorRPL19ZNHIT10.828619925.09E-32
UCSEpifactorRPL19PPM1G0.8303675522.91E-32
UCSEpifactorRPL19NOC2L0.8330238231.23E-32
UCSEpifactorRPL19EXOSC50.8491604684.58E-35
UCSEpifactorRPL19INO80E0.8540735837.32E-36
UCSEpifactorRPL19PPP4C0.8576927981.82E-36
UCSEpifactorRPL19EXOSC10.8591918381.01E-36
UCSEpifactorRPL19SS18L20.8599078757.59E-37
UCSEpifactorRPL19RUVBL20.8672203373.82E-38
UCSEpifactorRPL19SIRT60.867586373.27E-38
UCSEpifactorRPL19FBL0.8725195533.91E-39
UCSEpifactorRPL19BRMS10.8789195692.16E-40
UCSEpifactorRPL19TAF100.9089353732.04E-47
UCSIUPHARRPL19PRMT10.8027154681.04E-28
UCSIUPHARRPL19SIRT70.8065601773.60E-29
UCSIUPHARRPL19PSMB10.8083951152.16E-29
UCSIUPHARRPL19PPIA0.8324541281.48E-32
UCSIUPHARRPL19SMPD20.8359670414.63E-33
UCSIUPHARRPL19PHKG20.8397291331.30E-33
UCSIUPHARRPL19SLC27A50.8535383948.96E-36
UCSIUPHARRPL19SIRT60.867586373.27E-38
UCSKinaseRPL19PHKG20.8397291331.30E-33
UCSTFRPL19THAP30.802923719.81E-29
UCSTFRPL19IRF30.8034569118.48E-29
UCSTFRPL19CXXC10.8069343523.25E-29
UCSTFRPL19GTF3A0.8073241342.91E-29
UCSTFRPL19ZNF6680.8167427181.94E-30
UCSTFRPL19ZNF5110.8191770619.42E-31
UCSTFRPL19DRAP10.8200187827.31E-31
UCSTFRPL19ZNF4440.8277754066.65E-32
UCSTFRPL19THYN10.8312225982.21E-32
UCSTFRPL19ZNF6880.8430161694.14E-34
UCSTFRPL19ZNF7870.8455660931.68E-34
UCSTFRPL19ZNF4280.8487283835.36E-35
UCSTSGRPL19IRF30.8034569118.48E-29
UCSTSGRPL19PFN10.806607183.56E-29
UCSTSGRPL19ZNF6680.8167427181.94E-30
UCSTSGRPL19TSSC40.8380280332.31E-33
UCSTSGRPL19GADD45GIP10.8424117655.12E-34
UCSTSGRPL19HTRA20.8434381253.57E-34
UCSTSGRPL19AIP0.8463569641.27E-34
UCSTSGRPL19PARK70.8573424232.08E-36
UCSTSGRPL19NPRL20.8602286026.68E-37
UCSTSGRPL19SIRT60.867586373.27E-38
UCSTSGRPL19GNB2L10.8732476492.83E-39
UCSTSGRPL19BRMS10.8789195692.16E-40
UCSTSGRPL19GLTSCR20.8820802774.88E-41
UVMCell metabolism geneRPL19NME20.811475697.00E-20
UVMCell metabolism geneRPL19FAU0.8221819558.89E-21
UVMTFRPL19NME20.811475697.00E-20
UVMTSGRPL19GLTSCR20.8058690391.96E-19
UVMTSGRPL19GNB2L10.8103314648.66E-20


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
check button
* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
KIRPRPL19RPL18A-1.516513928088850.00016188295558095
KICHRPL19RPS27A1.753966937859560.000187873840332031
KIRPRPL19RPS16-1.359570436175170.00019507110118866
STADRPL19RPS231.850767606645760.000364991836249828
COADRPL19RPS31.487303751430140.000411599874496461
KIRPRPL19RPS11-1.018615705651030.00105937570333481
LIHCRPL19RPL8-4.845882849745580.00110314154326131
PRADRPL19RPL18A1.406001757484990.00205137828390396
KICHRPL19RPS121.269973817584310.00308787822723389
THCARPL19RPS16-6.163227981565770.0115764821363307
LUSCRPL19RPS231.467511698910470.0174932185880974
BLCARPL19RPS12-1.478046734404210.0204124450683594
BLCARPL19RPS27A-1.047474700691880.0258216857910156
HNSCRPL19RPS3-4.735058190951350.0273726439852453
COADRPL19RPS111.353075489982040.0312207043170929
UCECRPL19RPS23-2.036581598140070.046875
BRCARPL19RPS12-4.912393274782441.85340619742495e-09
KIRPRPL19RPL37-1.174216219471392.26888805627823e-05
KIRCRPL19RPL35-1.064752380593922.72286325678163e-08
KIRCRPL19RPL8-1.182524599717735.64962994208288e-07
KIRPRPL19RPL8-1.530036923501196.0301274061203e-05
KIRCRPL19RPS16-1.661498698893847.8509870430991e-09
BRCARPL19RPS27A-4.285121482004247.8788217967112e-14
KIRCRPL19RPL37-2.871988220584648.03913394748564e-12
KIRPRPL19RPL35-1.529811019754969.0546440333128e-05
KIRCRPL19RPS3-1.295608479263879.05905681935088e-10
KIRCRPL19RPL18A-4.430793049608439.2516163152192e-11


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with RPL19
HDGF, ARRB2, SIRT7, TERF1, CUL3, CUL4A, CUL5, CUL2, CDK2, CUL1, COPS5, CAND1, NEDD8, RPL10A, RPL11, RPL12, RPL13, RPL14, RPL15, RPL18A, RPL18, RPL21, RPL22, RPL23, RPL24, RPL27A, RPL30, RPL31, RPL37A, RPL3, RPL4, RPL5, RPL6, RPL7A, RPL7, RPL9, RPS13, RPS14, RPS15A, RPS16, RPS17, RPS19, RPS23, RPS25, RPS26, RPS2, RPS3A, RPS3, RPS4X, RPS5, RPS6, RPS7, RPS8, RPSA, RPL8, RPL23A, RPS24, RPS11, RPS28, RPL10, RPS20, RPS12, RPLP0, RPL36, RPL27, RPS9, RPL17, RPL32, RPS27A, RPS21, NOP56, NCL, ILF3, RSL1D1, HNRNPU, GNL3, ILF2, SRP14, SLC25A5, EIF4A1, FBL, NOP58, TUFM, DDX21, NHP2L1, LUC7L2, NOLC1, HNRNPM, NIFK, NOP2, RPLP0P6, RPL10L, RPS27L, RRS1, SND1, PTGES3, GNB2L1, ECE1, NUP214, TUBB7P, DDX5, MRPL12, ESR1, MAGOH, EIF4A3, UBL4A, PAN2, IGSF8, ICAM1, COX11, YWHAQ, TARDBP, PARP1, KARS, NMT1, QARS, RPLP1, RPA3, RPA2, RPA1, STAU1, CEP250, TP53, CUL7, OBSL1, RNF2, RPS6KB2, RPL13A, RPL38, RPS29, RPL26, RPL28, RPL34, RPL35, RPL35A, RPL3L, RPLP2, RPS10, RPS15, RPS18, LOC101929876, SEC61A1, NTRK1, HIST1H3E, NPM1, Eif3a, Eif3e, Rpl35, Srp72, Rrbp1, Ksr1, E4F1, ZCRB1, SART3, H2AFX, CYLD, INO80B, TRIM25, YAP1, MTF1, TRIM14, GSK3A, ARNT, BMP4, MAP2K3, PCBP1, PYHIN1, PRPF8, EFTUD2, AAR2, PIH1D1, TNIP2, CHD3, RNF4, CHD4, RIOK1, FGF11, HEXIM1, MEPCE, LARP7, SNAI1, RECQL4, REST, MYC, HIST1H3A, METTL14, KIAA1429, RC3H1, RC3H2, ACTC1, PHB, RBX1, KIN, NR2C2, PPP1CC, CTCF, NINL, VRK1, HIST1H4A, SNRNP70, Dppa3, PTPN21, ITFG1, HMGB1, BIRC3, WWP2, CMTR1, ARIH2, PLEKHA4, KCTD10, PINK1, FANCD2, HCVgp1, ZC3H18, GRB7, MAP3K14, PTPN6, HIST2H2BE, FMNL3, IGF2R, FKBP2, TMEM132C, TEX15, NISCH, ORF8, DUX4, CIT, ANLN, AURKB, CHMP4B, CHMP4C, ECT2, KIF14, KIF20A, KIF23, PRC1, MKI67, LRRC59, NDN, Rnf183, BRD4, N, Apc2, RBM39, FBP1, RIN3, PARK2, UFL1, DDRGK1, TRIM37, ATG3, USP15, FZR1, WDR5, PAGE4, NUDCD2, NAA40, WHSC1, ADARB1, PURA, RRP8, MRPL45, RSBN1, AATF, MALSU1, MRPL49, RPL26L1, HIST2H2AC, YTHDF1, SF3B1, NGDN, ZNF22, PRR3, MRPL11, MRPL9, MRPL1, MRPL38, MRPL40, ZNF646, ZNF384, MRPL28, NPM3, DHX8, MRPL47, MRPL16, GADD45GIP1, ZFR, MRPL50, PABPC4L, MRPL55, DDX55, BMS1, ZFP62, CHERP, ISG20L2, MRPL30, MRPS30, PRDM15, RRP12, STRBP, GZF1, BHLHA15, ZNF768, KNOP1, NOC2L, MRPS15, MRPS9, MRPS25, MRPL21, ZNF346, GTPBP4, YTHDC1, GLE1, ZNF777, TOE1, H1FOO, ZNF771, KRR1, ZNF770, PRKRIR, ZNF70, KRI1, RPL36AL, NOC4L, PRKRA, ZBTB24, STAU2, DDX18, RBM34, BUD13, REXO4, HERC5, ZFP91, RBM19, MRPL23, SF3B2, MRPL13, DAXX, MINA, TRIM71, MRPL44, MRPL43, FARS2, NOL10, MRPL10, CCDC140, ZKSCAN8, MRPL51, SRSF1, DDX10, BLM, YBX1, MRPL39, MRPL32, MRPL24, CEBPZ, NOA1, MRPL22, MRPL2, NAT10, MPHOSPH10, SREK1, RBM5, ZNF668, ZNF624, GNL2, RSBN1L, DHX57, WDR55, ZC3HAV1, MRPL34, ICT1, MRPS10, YBX2, MRPS7, ZNF629, NOC3L, SRSF6, SRSF5, ZSCAN25, UTP23, ZBTB11, ZNF16, ELAVL4, MRPL18, DDX31, MRPL15, MRPS26, ZNF574, RBM28, ABT1, PTCD3, METTL17, MRPL42, PRPF4B, MRPL3, MAP7D1, C7orf50, WDR74, GLYR1, DDX27, YTHDC2, MRPL20, GLTSCR2, EPB41L5, FAM111A, ZNF512, MRPL27, MRPL52, MRPL57, MRPS17, MRPS18C, PAK1IP1, MRPL4, MRPS35, SRSF10, RSL24D1, OASL, CCDC137, DDX50, DKC1, MRPL48, DDX24, MRPS5, VPRBP, LARP1B, MAGEB2, SURF6, NKRF, EIF2AK2, SCAF1, GAR1, HIST2H2AB, PPAN-P2RY11, DAP3, MTERF3, APOBEC3F, LTV1, MRPL41, DDX54, NOL12, DHX36, MAK16, RPL7L1, MRPL37, POP1, YBX3, MRPS14, MRPS11, NOP16, FTSJ3, MRPL35, MRPL17, NSA2, MRPL46, RPS4Y2, BTF3, FBXW7, EIF4ENIF1, Rbm14, NLRP7, RCHY1, CCNF, OPTN, KLF4,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo
RPL19chr1737356599TGsingle_nucleotide_variantUncertain_significancenot_providedSO:0001582|initiatior_codon_variant,SO:0001583|missense_variant,SO:0001623|5_prime_UTR_variantSO:0001582|initiatior_codon_variant,SO:0001583|missense_variant,SO:0001623|5_prime_UTR_variant
RPL19chr1737357506CGATIndelUncertain_significancenot_providedSO:0001583|missense_variantSO:0001583|missense_variant
RPL19chr1737357556CTsingle_nucleotide_variantLikely_benignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL19chr1737358647CAsingle_nucleotide_variantBenignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL19chr1737358679GAsingle_nucleotide_variantBenignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL19chr1737359324CGsingle_nucleotide_variantLikely_benignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL19chr1737359356GAsingle_nucleotide_variantUncertain_significancenot_providedSO:0001583|missense_variantSO:0001583|missense_variant
RPL19chr1737360342GAsingle_nucleotide_variantLikely_benignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL19chr1737360769CTsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL19chr1737360793CTsingle_nucleotide_variantLikely_benignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL19chr1737360844GAsingle_nucleotide_variantBenignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL19chr1737360846CTsingle_nucleotide_variantBenignnot_providedSO:0001583|missense_variantSO:0001583|missense_variant
RPL19chr1737360863ATsingle_nucleotide_variantBenignnot_providedSO:0001583|missense_variantSO:0001583|missense_variant
RPL19chr1737360874AGsingle_nucleotide_variantLikely_benignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL19chr1737360889GAsingle_nucleotide_variantLikely_benignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL19chr1737360895GAsingle_nucleotide_variantBenignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
RPL19PCPGchr173736089037360890AGMissense_Mutationp.T194A4
RPL19BRCAchr173735862537358625GASilentp.T563
RPL19BRCAchr173735932637359326GAMissense_Mutationp.R107K3
RPL19KIRCchr173736086337360863ATMissense_Mutationp.I185F3
RPL19KIRPchr173735865737358657CTMissense_Mutation2
RPL19UCECchr173735864137358641CTNonsense_Mutationp.R62*2
RPL19UCECchr173735924737359247CTMissense_Mutationp.R81W2
RPL19UCECchr173735933237359332AGMissense_Mutationp.Y109C2
RPL19UCECchr173735935537359355CTMissense_Mutationp.R117C2
RPL19TGCTchr173736042437360424CTMissense_Mutationp.R151C2
RPL19KIRPchr173735865737358657CTMissense_Mutationp.T67I2
RPL19THYMchr173735931337359313CTMissense_Mutationp.R103C2
RPL19SKCMchr173735861137358611CTMissense_Mutationp.R52C1
RPL19BLCAchr173736085037360850GCMissense_Mutation1
RPL19THYMchr173736042537360425GAMissense_Mutationp.R151H1
RPL19LIHCchr173735750637357506CTMissense_Mutationp.R16C1
RPL19SKCMchr173736088137360881GAMissense_Mutationp.E189K1
RPL19BLCAchr173736085037360850GCMissense_Mutationp.K178N1
RPL19LUADchr173735869237358692GTSplice_Sitep.G77_splice1
RPL19SKCMchr173735752037357520GASilentp.K18K1
RPL19LUADchr173735750537357505CTSilentp.L13L1
RPL19SKCMchr173735861137358611CTMissense_Mutationp.R50C1
RPL19LUADchr173736081837360818CGMissense_Mutationp.R168G1
RPL19STADchr173735933437359334CTMissense_Mutationp.R110C1
RPL19COADchr173736038537360385CTMissense_Mutationp.L138F1
RPL19LUADchr173735869237358692GTMissense_Mutationp.G79C1
RPL19STADchr173735927337359273GTMissense_Mutationp.M89I1
RPL19LUSCchr173735755137357551GAMissense_Mutationp.E31K1
RPL19KIRCchr173735753337357533GCMissense_Mutationp.D25H1
RPL19PAADchr173735743737357437GAMissense_Mutation1
RPL19THCAchr173736084437360844GASilent1
RPL19KIRCchr173736079337360793CTSilentp.A161A1
RPL19THCAchr173736084637360846CTMissense_Mutation1
RPL19KIRCchr173736084637360846CTMissense_Mutationp.A179V1
RPL19PRADchr173736042537360425GAMissense_Mutationp.R149H1
RPL19BLCAchr173735743537357435CTMissense_Mutation1
RPL19THYMchr173735931337359313CTMissense_Mutation1
RPL19PRADchr173735751537357517AAG-In_Frame_Delp.K19del1
RPL19BLCAchr173735747237357472CTSilent1

check buttonCopy number variation (CNV) of RPL19
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across RPL19
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
57232BRCATCGA-A8-A08B-01ACACNB1chr1737341037-RPL19chr1737358570+
57232LAMLTCGA-AB-2932_704G6AAXX_6CDK12chr1737628016+RPL19chr1737359242+
57232N/ABI496727DLG2chr1183548765-RPL19chr1737360980-
57232N/AAA075993FAM153Cchr5177482847-RPL19chr1737360980-
57232N/AAA491515FAM153Cchr5177483265+RPL19chr1737360330+
57232N/AAA164713ISPDchr716328015-RPL19chr1737360975-
57233N/AEC555197NAPEPLDchr7102782084-RPL19chr1737359240+
76103N/AAA579455RPL19chr1737360821+AC009997.1chr1556038831+
99398N/ABI861713RPL19chr1737360975+ADAM9chr838871032-
76103N/ADT217361RPL19chr1737360365+ALADchr9116155751-
76103N/AAW021565RPL19chr1737360980+ALOX12P2chr176840435+
99260Non-CancerTCGA-IP-7968-11ARPL19chr1737357572+CACNB1chr1737351223-
76103BRCATCGA-BH-A0B7RPL19chr1737356602+CCL11chr1732614114+
76103BRCATCGA-BH-A0B7-01ARPL19chr1737356602+CCL11chr1732614115+
76103BRCATCGA-BH-A0B7-01ARPL19chr1737356731+CCL11chr1732614115+
94731N/ABF526730RPL19chr1737360975+CEP152chr1549020117+
76103N/AAV682672RPL19chr1737360980+ERVMER34-1chr453592064-
76103N/AAA316329RPL19chr1737359365+FAM153Cchr5177482622+
76103N/AAA541786RPL19chr1737358569-FAM153Cchr5177483111-
76103N/ABI855679RPL19chr1737360980+FAM153Cchr5177482611+
76103N/ABI858244RPL19chr1737360980+FAM153Cchr5177482622+
76103N/ABI858270RPL19chr1737360870-FAM153Cchr5177483187+
76103N/AHH980979RPL19chr1737360980+FAM153Cchr5177482573+
100117N/ABI496198RPL19chr1737360975+ISPDchr716328015+
96230MESOTCGA-MQ-A6BR-01ARPL19chr1737357572+ITLN1chr1160846606-
94447N/ABE720744RPL19chr1737360412-KRT13chr1739657355-
87953N/ABG575833RPL19chr1737360980+MAGI1chr365935556+
100576N/AAA508102RPL19chr1737360980+MAP2K5chr1567843129-
95663N/ABI493272RPL19chr1737360980+PPP6R2chr2250828443-
102036N/ABM013487RPL19chr1737360975+PRKCZchr12078034-
102127N/AAA483007RPL19chr1737360980+RAPGEF4chr2173736372-
83858BRCATCGA-OL-A5RZ-01ARPL19chr1737359365+RPS24chr1079800367+
102305N/AAW021900RPL19chr1737360980+STX8chr179353128-
92453N/AT20077RPL19chr1737360975+ZNF407chr1872724905+


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
KIRCRPL190.02691586569895090.75

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
LUSCRPL190.0004563750239252820.015
PAADRPL190.008133633571555750.26
CHOLRPL190.04327628268145781

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source
C1260899Anemia, Diamond-Blackfan1GENOMICS_ENGLAND