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Translation Factor: RPL19 (NCBI Gene ID:6143) |
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Gene Summary |
Gene Information | Gene Name: RPL19 | Gene ID: 6143 | Gene Symbol | RPL19 | Gene ID | 6143 |
Gene Name | ribosomal protein L19 | |
Synonyms | L19 | |
Cytomap | 17q12 | |
Type of Gene | protein-coding | |
Description | 60S ribosomal protein L19large ribosomal subunit protein eL19 | |
Modification date | 20200313 | |
UniProtAcc | P84098 |
Child GO biological process term(s) under GO:0006412 |
GO ID | GO term |
GO:0005840 | Ribosome |
GO:0002181 | Cytoplasmic translation |
GO:0006412 | Translation |
Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | RPL19 | GO:0002181 | cytoplasmic translation | 25957688 |
Inferred gene age of translation factor. |
Gene | Inferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25 |
RPL19 | >1119.25 |
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We searched PubMed using 'RPL19[title] AND translation [title] AND human.' |
Gene | Title | PMID |
RPL19 | . | . |
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Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. For more annotations, please visit our ExonSkipDB. |
Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ENST | Exon skip start (DNA) | Exon Skip end (DNA) | ORF |
ENST00000225430 | 37358569 | 37358692 | In-frame |
ENST00000225430 | 37359241 | 37359362 | Frame-shift |
ENST00000225430 | 37360329 | 37360440 | In-frame |
Exon skipping position in the amino acid sequence. |
ENST | Exon skip start (DNA) | Exon Skip end (DNA) | Len(transcript seq) | Exon skip start (mRNA) | Exon Skip end (mRNA) | Len(amino acid seq) | Exon skip start (AA) | Exon Skip end (AA) |
ENST00000225430 | 37358569 | 37358692 | 749 | 175 | 297 | 196 | 37 | 78 |
ENST00000225430 | 37360329 | 37360440 | 749 | 419 | 529 | 196 | 119 | 155 |
Potentially (partially) lost protein functional features of UniProt. |
UniProtAcc | Exon skip start (AA) | Exon Skip end (AA) | Function feature start (AA) | Function feature end (AA) | Functional feature type | Functional feature desc. |
P84098 | 119 | 155 | 1 | 196 | Chain | ID=PRO_0000131169;Note=60S ribosomal protein L19 |
P84098 | 37 | 78 | 1 | 196 | Chain | ID=PRO_0000131169;Note=60S ribosomal protein L19 |
P84098 | 37 | 78 | 38 | 38 | Modified residue | Note=Citrulline;Ontology_term=ECO:0000250;evidence=ECO:0000250 |
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Gene expression level across TCGA pancancer |
Gene expression level across GTEx pantissue |
Expression level of gene isoforms across TCGA pancancer |
Expression level of gene isoforms across GTEx pantissue |
Cancer(tissue) type-specific expression level of Translation factor using z-score distriution |
Differential expression between tumor and matched normal (in the cancer types with more than 10 matched samples) |
Cancer type | Translation factor | FC | adj.pval |
KICH | RPL19 | 1.36901182894089 | 0.00250792503356934 |
LUAD | RPL19 | -1.31398026615725 | 0.00993159558412698 |
LUSC | RPL19 | -2.14669889516666 | 0.044366810398747 |
KIRC | RPL19 | -2.73485271276676 | 1.33980982873695e-10 |
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Translation factor expression regulation through miRNA binding |
Cancer type | Gene | miRNA | TargetScan binding score (Context++ score percentile) | Coefficient | Pvalue |
Translation factor expression regulation through methylation in the promoter of Translation factor |
Cancer type | Gene | methyl group b | methyl group a | DEG pval | avg methyl in b | avg methyl in a | avg exp in b | avg exp in a |
MESO | RPL19 | 1 | 2 | 0.0212344849557325 | 0.184754437869822 | 0.227699792099792 | -0.189392074792377 | 0.506594203793632 |
Translation factor expression regulation through methylation in the gene body of Translation factor (positive regulation) |
Cancer type | Gene | methyl group b | methyl group a | DEG pval | avg methyl in b | avg methyl in a | avg exp in b | avg exp in a |
CESC | RPL19 | 1 | 2 | 0.0143031188816401 | 0.164999 | 0.276581357615894 | -0.5308607842379 | -0.0592655524490985 |
DLBC | RPL19 | 1 | 2 | 0.0296673366854866 | 0.160484848484849 | 0.244985897435898 | -1.21734442060309 | -0.995069245776846 |
THYM | RPL19 | 1 | 2 | 0.0410004528574362 | 0.185899507389163 | 0.219073319327731 | -0.145701473892269 | -0.0336381371782616 |
Translation factor expression regulation through copy number variation of Translation factor |
Cancer type | Gene | Coefficient | Pvalue |
UCEC | RPL19 | 0.127861609 | 0.023331786 |
KICH | RPL19 | 0.01996991 | 0.042866181 |
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Strongly correlated genes belong to cellular important gene groups with RPL19 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green) |
Cancer type | Gene group | Translation factor | Correlated gene | Coefficient | Pvalue |
CHOL | CGC | RPL19 | NACA | 0.817449058 | 7.31E-12 |
CHOL | Epifactor | RPL19 | FBL | 0.805661329 | 2.47E-11 |
CHOL | TSG | RPL19 | GNB2L1 | 0.842719608 | 3.88E-13 |
DLBC | Cell metabolism gene | RPL19 | TIMM13 | 0.803986469 | 5.94E-12 |
DLBC | Cell metabolism gene | RPL19 | TOMM22 | 0.805678307 | 4.97E-12 |
DLBC | Cell metabolism gene | RPL19 | POLR2F | 0.812050386 | 2.48E-12 |
DLBC | Cell metabolism gene | RPL19 | GEMIN7 | 0.821817108 | 8.14E-13 |
DLBC | Cell metabolism gene | RPL19 | PFDN5 | 0.846880631 | 3.32E-14 |
DLBC | Cell metabolism gene | RPL19 | SNRPD2 | 0.856929709 | 7.80E-15 |
DLBC | Cell metabolism gene | RPL19 | TIMM9 | 0.871803488 | 7.38E-16 |
DLBC | Cell metabolism gene | RPL19 | NME2 | 0.881762395 | 1.28E-16 |
DLBC | Cell metabolism gene | RPL19 | FAU | 0.889394417 | 3.01E-17 |
DLBC | CGC | RPL19 | NACA | 0.883550302 | 9.23E-17 |
DLBC | Epifactor | RPL19 | FBL | 0.848844478 | 2.52E-14 |
DLBC | TF | RPL19 | ZNF581 | 0.862941809 | 3.11E-15 |
DLBC | TF | RPL19 | NME2 | 0.881762395 | 1.28E-16 |
DLBC | TSG | RPL19 | GADD45GIP1 | 0.811678732 | 2.59E-12 |
DLBC | TSG | RPL19 | GLTSCR2 | 0.857987873 | 6.65E-15 |
DLBC | TSG | RPL19 | GNB2L1 | 0.941727768 | 2.12E-23 |
GBM | Cell metabolism gene | RPL19 | FAU | 0.834254613 | 8.13E-46 |
KICH | Cell metabolism gene | RPL19 | NME1 | 0.81078408 | 2.06E-22 |
KICH | Cell metabolism gene | RPL19 | PSMB3 | 0.837188976 | 4.74E-25 |
KICH | Cell metabolism gene | RPL19 | SSR2 | 0.852031464 | 9.48E-27 |
KICH | IUPHAR | RPL19 | CSNK2B | 0.854430018 | 4.84E-27 |
KICH | TSG | RPL19 | NME1 | 0.81078408 | 2.06E-22 |
KICH | TSG | RPL19 | GAS5 | 0.813009487 | 1.28E-22 |
KIRP | Cell metabolism gene | RPL19 | NME1 | 0.805322487 | 7.14E-75 |
KIRP | Cell metabolism gene | RPL19 | FAU | 0.814824297 | 5.33E-78 |
KIRP | Cell metabolism gene | RPL19 | NME2 | 0.841806733 | 5.81E-88 |
KIRP | Cell metabolism gene | RPL19 | SNRPD2 | 0.853513744 | 6.92E-93 |
KIRP | Cell metabolism gene | RPL19 | PSMB3 | 0.864618469 | 5.70E-98 |
KIRP | TF | RPL19 | NME2 | 0.841806733 | 5.81E-88 |
KIRP | TSG | RPL19 | NME1 | 0.805322487 | 7.14E-75 |
LGG | Cell metabolism gene | RPL19 | IMPDH2 | 0.801324132 | 6.65E-120 |
LGG | Cell metabolism gene | RPL19 | FAU | 0.920285693 | 2.46E-217 |
LGG | CGC | RPL19 | NACA | 0.848044482 | 9.93E-148 |
LGG | IUPHAR | RPL19 | IMPDH2 | 0.801324132 | 6.65E-120 |
LGG | TSG | RPL19 | GAS5 | 0.823108736 | 7.47E-132 |
LGG | TSG | RPL19 | GNB2L1 | 0.875848897 | 3.35E-169 |
PAAD | Cell metabolism gene | RPL19 | FAU | 0.806861758 | 3.07E-43 |
PCPG | Cell metabolism gene | RPL19 | PSMB3 | 0.802532588 | 2.31E-43 |
PRAD | Cell metabolism gene | RPL19 | PGLS | 0.80337925 | 1.78E-125 |
PRAD | Cell metabolism gene | RPL19 | POLR2I | 0.808687571 | 2.18E-128 |
PRAD | Cell metabolism gene | RPL19 | POLR2F | 0.824381478 | 1.49E-137 |
PRAD | Cell metabolism gene | RPL19 | TIMM9 | 0.828962979 | 2.11E-140 |
PRAD | Cell metabolism gene | RPL19 | SNRPD2 | 0.845894258 | 1.02E-151 |
PRAD | Cell metabolism gene | RPL19 | NME2 | 0.859988557 | 3.11E-162 |
PRAD | Cell metabolism gene | RPL19 | FAU | 0.876491375 | 4.09E-176 |
PRAD | CGC | RPL19 | NACA | 0.863520305 | 4.74E-165 |
PRAD | Epifactor | RPL19 | FBL | 0.85651714 | 1.53E-159 |
PRAD | TF | RPL19 | ZNF524 | 0.810303563 | 2.73E-129 |
PRAD | TF | RPL19 | NME2 | 0.859988557 | 3.11E-162 |
PRAD | TSG | RPL19 | GAS5 | 0.816002532 | 1.50E-132 |
PRAD | TSG | RPL19 | GNB2L1 | 0.886891771 | 6.26E-186 |
TGCT | Cell metabolism gene | RPL19 | FAU | 0.817980467 | 8.14E-39 |
THCA | Cell metabolism gene | RPL19 | POLR2I | 0.804844067 | 2.90E-131 |
THCA | Cell metabolism gene | RPL19 | SNRPD2 | 0.858748397 | 1.16E-167 |
THCA | Cell metabolism gene | RPL19 | PFDN5 | 0.874073108 | 7.24E-181 |
THCA | Cell metabolism gene | RPL19 | FAU | 0.894912686 | 6.71E-202 |
THCA | CGC | RPL19 | NACA | 0.814085817 | 1.21E-136 |
THCA | TSG | RPL19 | GNB2L1 | 0.805825427 | 8.03E-132 |
THCA | TSG | RPL19 | AIP | 0.811543423 | 3.92E-135 |
THCA | TSG | RPL19 | GADD45GIP1 | 0.812502056 | 1.06E-135 |
THYM | Cell metabolism gene | RPL19 | MTX1 | 0.80161845 | 1.40E-28 |
THYM | Cell metabolism gene | RPL19 | SNRPE | 0.801977342 | 1.27E-28 |
THYM | Cell metabolism gene | RPL19 | FPGS | 0.802060389 | 1.24E-28 |
THYM | Cell metabolism gene | RPL19 | PSMC5 | 0.804211401 | 6.90E-29 |
THYM | Cell metabolism gene | RPL19 | TXN | 0.807177481 | 3.03E-29 |
THYM | Cell metabolism gene | RPL19 | PSMA4 | 0.80833186 | 2.20E-29 |
THYM | Cell metabolism gene | RPL19 | PSMB1 | 0.808395115 | 2.16E-29 |
THYM | Cell metabolism gene | RPL19 | TIMM10 | 0.809583468 | 1.54E-29 |
THYM | Cell metabolism gene | RPL19 | POLR2J | 0.80992021 | 1.40E-29 |
THYM | Cell metabolism gene | RPL19 | POLR2F | 0.813295615 | 5.33E-30 |
THYM | Cell metabolism gene | RPL19 | GEMIN7 | 0.814452912 | 3.81E-30 |
THYM | Cell metabolism gene | RPL19 | DTYMK | 0.814662068 | 3.58E-30 |
THYM | Cell metabolism gene | RPL19 | MTMR14 | 0.815701311 | 2.64E-30 |
THYM | Cell metabolism gene | RPL19 | PSMB10 | 0.81600705 | 2.42E-30 |
THYM | Cell metabolism gene | RPL19 | PSME1 | 0.816074322 | 2.37E-30 |
THYM | Cell metabolism gene | RPL19 | PAFAH1B3 | 0.816504519 | 2.09E-30 |
THYM | Cell metabolism gene | RPL19 | EXOSC4 | 0.818595626 | 1.12E-30 |
THYM | Cell metabolism gene | RPL19 | SRM | 0.819630013 | 8.22E-31 |
THYM | Cell metabolism gene | RPL19 | LSM5 | 0.819917025 | 7.54E-31 |
THYM | Cell metabolism gene | RPL19 | HMBS | 0.821971373 | 4.04E-31 |
THYM | Cell metabolism gene | RPL19 | SNRPB | 0.825286282 | 1.45E-31 |
THYM | Cell metabolism gene | RPL19 | EBP | 0.827228933 | 7.91E-32 |
THYM | Cell metabolism gene | RPL19 | POLR2I | 0.82918142 | 4.25E-32 |
THYM | Cell metabolism gene | RPL19 | TOMM22 | 0.830402177 | 2.87E-32 |
THYM | Cell metabolism gene | RPL19 | POLR2H | 0.831421122 | 2.07E-32 |
THYM | Cell metabolism gene | RPL19 | PFDN6 | 0.831797005 | 1.83E-32 |
THYM | Cell metabolism gene | RPL19 | SNRPD3 | 0.832190054 | 1.61E-32 |
THYM | Cell metabolism gene | RPL19 | GEMIN6 | 0.834801936 | 6.82E-33 |
THYM | Cell metabolism gene | RPL19 | ITPA | 0.835265741 | 5.85E-33 |
THYM | Cell metabolism gene | RPL19 | SMPD2 | 0.835967041 | 4.63E-33 |
THYM | Cell metabolism gene | RPL19 | SNRPD1 | 0.836691898 | 3.63E-33 |
THYM | Cell metabolism gene | RPL19 | PGLS | 0.837073905 | 3.19E-33 |
THYM | Cell metabolism gene | RPL19 | ACOT8 | 0.837970518 | 2.36E-33 |
THYM | Cell metabolism gene | RPL19 | TOMM40 | 0.839642674 | 1.33E-33 |
THYM | Cell metabolism gene | RPL19 | PHKG2 | 0.839729133 | 1.30E-33 |
THYM | Cell metabolism gene | RPL19 | TIMM50 | 0.840053621 | 1.16E-33 |
THYM | Cell metabolism gene | RPL19 | SSR2 | 0.840434882 | 1.02E-33 |
THYM | Cell metabolism gene | RPL19 | SNRPF | 0.846078052 | 1.40E-34 |
THYM | Cell metabolism gene | RPL19 | TIMM13 | 0.846404115 | 1.24E-34 |
THYM | Cell metabolism gene | RPL19 | LSM4 | 0.846427253 | 1.23E-34 |
THYM | Cell metabolism gene | RPL19 | EXOSC5 | 0.849160468 | 4.58E-35 |
THYM | Cell metabolism gene | RPL19 | DGUOK | 0.850968969 | 2.35E-35 |
THYM | Cell metabolism gene | RPL19 | SLC27A5 | 0.853538394 | 8.96E-36 |
THYM | Cell metabolism gene | RPL19 | LSM2 | 0.854446402 | 6.35E-36 |
THYM | Cell metabolism gene | RPL19 | EXOSC1 | 0.859191838 | 1.01E-36 |
THYM | Cell metabolism gene | RPL19 | PSMB7 | 0.860373308 | 6.30E-37 |
THYM | Cell metabolism gene | RPL19 | APRT | 0.867428936 | 3.50E-38 |
THYM | Cell metabolism gene | RPL19 | PFDN5 | 0.868995061 | 1.80E-38 |
THYM | Cell metabolism gene | RPL19 | PSMC3 | 0.870800321 | 8.27E-39 |
THYM | Cell metabolism gene | RPL19 | PSMD13 | 0.876949021 | 5.37E-40 |
THYM | Cell metabolism gene | RPL19 | PSMB3 | 0.883963322 | 1.97E-41 |
THYM | Cell metabolism gene | RPL19 | SNRPD2 | 0.903790102 | 4.73E-46 |
THYM | Cell metabolism gene | RPL19 | TIMM8B | 0.905536658 | 1.66E-46 |
THYM | Cell metabolism gene | RPL19 | FAU | 0.92209126 | 2.62E-51 |
THYM | CGC | RPL19 | TFPT | 0.811786144 | 8.24E-30 |
THYM | CGC | RPL19 | SDHAF2 | 0.855988158 | 3.52E-36 |
THYM | Epifactor | RPL19 | PRMT1 | 0.802715468 | 1.04E-28 |
THYM | Epifactor | RPL19 | C17orf49 | 0.804374642 | 6.59E-29 |
THYM | Epifactor | RPL19 | SIRT7 | 0.806560177 | 3.60E-29 |
THYM | Epifactor | RPL19 | CXXC1 | 0.806934352 | 3.25E-29 |
THYM | Epifactor | RPL19 | TFPT | 0.811786144 | 8.24E-30 |
THYM | Epifactor | RPL19 | EXOSC4 | 0.818595626 | 1.12E-30 |
THYM | Epifactor | RPL19 | PRPF31 | 0.822601092 | 3.34E-31 |
THYM | Epifactor | RPL19 | CCDC101 | 0.824730888 | 1.73E-31 |
THYM | Epifactor | RPL19 | ZNHIT1 | 0.82861992 | 5.09E-32 |
THYM | Epifactor | RPL19 | PPM1G | 0.830367552 | 2.91E-32 |
THYM | Epifactor | RPL19 | NOC2L | 0.833023823 | 1.23E-32 |
THYM | Epifactor | RPL19 | EXOSC5 | 0.849160468 | 4.58E-35 |
THYM | Epifactor | RPL19 | INO80E | 0.854073583 | 7.32E-36 |
THYM | Epifactor | RPL19 | PPP4C | 0.857692798 | 1.82E-36 |
THYM | Epifactor | RPL19 | EXOSC1 | 0.859191838 | 1.01E-36 |
THYM | Epifactor | RPL19 | SS18L2 | 0.859907875 | 7.59E-37 |
THYM | Epifactor | RPL19 | RUVBL2 | 0.867220337 | 3.82E-38 |
THYM | Epifactor | RPL19 | SIRT6 | 0.86758637 | 3.27E-38 |
THYM | Epifactor | RPL19 | FBL | 0.872519553 | 3.91E-39 |
THYM | Epifactor | RPL19 | BRMS1 | 0.878919569 | 2.16E-40 |
THYM | Epifactor | RPL19 | TAF10 | 0.908935373 | 2.04E-47 |
THYM | IUPHAR | RPL19 | PRMT1 | 0.802715468 | 1.04E-28 |
THYM | IUPHAR | RPL19 | SIRT7 | 0.806560177 | 3.60E-29 |
THYM | IUPHAR | RPL19 | PSMB1 | 0.808395115 | 2.16E-29 |
THYM | IUPHAR | RPL19 | PPIA | 0.832454128 | 1.48E-32 |
THYM | IUPHAR | RPL19 | SMPD2 | 0.835967041 | 4.63E-33 |
THYM | IUPHAR | RPL19 | PHKG2 | 0.839729133 | 1.30E-33 |
THYM | IUPHAR | RPL19 | SLC27A5 | 0.853538394 | 8.96E-36 |
THYM | IUPHAR | RPL19 | SIRT6 | 0.86758637 | 3.27E-38 |
THYM | Kinase | RPL19 | PHKG2 | 0.839729133 | 1.30E-33 |
THYM | TF | RPL19 | THAP3 | 0.80292371 | 9.81E-29 |
THYM | TF | RPL19 | IRF3 | 0.803456911 | 8.48E-29 |
THYM | TF | RPL19 | CXXC1 | 0.806934352 | 3.25E-29 |
THYM | TF | RPL19 | GTF3A | 0.807324134 | 2.91E-29 |
THYM | TF | RPL19 | ZNF668 | 0.816742718 | 1.94E-30 |
THYM | TF | RPL19 | ZNF511 | 0.819177061 | 9.42E-31 |
THYM | TF | RPL19 | DRAP1 | 0.820018782 | 7.31E-31 |
THYM | TF | RPL19 | ZNF444 | 0.827775406 | 6.65E-32 |
THYM | TF | RPL19 | THYN1 | 0.831222598 | 2.21E-32 |
THYM | TF | RPL19 | ZNF688 | 0.843016169 | 4.14E-34 |
THYM | TF | RPL19 | ZNF787 | 0.845566093 | 1.68E-34 |
THYM | TF | RPL19 | ZNF428 | 0.848728383 | 5.36E-35 |
THYM | TSG | RPL19 | IRF3 | 0.803456911 | 8.48E-29 |
THYM | TSG | RPL19 | PFN1 | 0.80660718 | 3.56E-29 |
THYM | TSG | RPL19 | ZNF668 | 0.816742718 | 1.94E-30 |
THYM | TSG | RPL19 | TSSC4 | 0.838028033 | 2.31E-33 |
THYM | TSG | RPL19 | GADD45GIP1 | 0.842411765 | 5.12E-34 |
THYM | TSG | RPL19 | HTRA2 | 0.843438125 | 3.57E-34 |
THYM | TSG | RPL19 | AIP | 0.846356964 | 1.27E-34 |
THYM | TSG | RPL19 | PARK7 | 0.857342423 | 2.08E-36 |
THYM | TSG | RPL19 | NPRL2 | 0.860228602 | 6.68E-37 |
THYM | TSG | RPL19 | SIRT6 | 0.86758637 | 3.27E-38 |
THYM | TSG | RPL19 | GNB2L1 | 0.873247649 | 2.83E-39 |
THYM | TSG | RPL19 | BRMS1 | 0.878919569 | 2.16E-40 |
THYM | TSG | RPL19 | GLTSCR2 | 0.882080277 | 4.88E-41 |
UCS | Cell metabolism gene | RPL19 | MTX1 | 0.80161845 | 1.40E-28 |
UCS | Cell metabolism gene | RPL19 | SNRPE | 0.801977342 | 1.27E-28 |
UCS | Cell metabolism gene | RPL19 | FPGS | 0.802060389 | 1.24E-28 |
UCS | Cell metabolism gene | RPL19 | PSMC5 | 0.804211401 | 6.90E-29 |
UCS | Cell metabolism gene | RPL19 | TXN | 0.807177481 | 3.03E-29 |
UCS | Cell metabolism gene | RPL19 | PSMA4 | 0.80833186 | 2.20E-29 |
UCS | Cell metabolism gene | RPL19 | PSMB1 | 0.808395115 | 2.16E-29 |
UCS | Cell metabolism gene | RPL19 | TIMM10 | 0.809583468 | 1.54E-29 |
UCS | Cell metabolism gene | RPL19 | POLR2J | 0.80992021 | 1.40E-29 |
UCS | Cell metabolism gene | RPL19 | POLR2F | 0.813295615 | 5.33E-30 |
UCS | Cell metabolism gene | RPL19 | GEMIN7 | 0.814452912 | 3.81E-30 |
UCS | Cell metabolism gene | RPL19 | DTYMK | 0.814662068 | 3.58E-30 |
UCS | Cell metabolism gene | RPL19 | MTMR14 | 0.815701311 | 2.64E-30 |
UCS | Cell metabolism gene | RPL19 | PSMB10 | 0.81600705 | 2.42E-30 |
UCS | Cell metabolism gene | RPL19 | PSME1 | 0.816074322 | 2.37E-30 |
UCS | Cell metabolism gene | RPL19 | PAFAH1B3 | 0.816504519 | 2.09E-30 |
UCS | Cell metabolism gene | RPL19 | EXOSC4 | 0.818595626 | 1.12E-30 |
UCS | Cell metabolism gene | RPL19 | SRM | 0.819630013 | 8.22E-31 |
UCS | Cell metabolism gene | RPL19 | LSM5 | 0.819917025 | 7.54E-31 |
UCS | Cell metabolism gene | RPL19 | HMBS | 0.821971373 | 4.04E-31 |
UCS | Cell metabolism gene | RPL19 | SNRPB | 0.825286282 | 1.45E-31 |
UCS | Cell metabolism gene | RPL19 | EBP | 0.827228933 | 7.91E-32 |
UCS | Cell metabolism gene | RPL19 | POLR2I | 0.82918142 | 4.25E-32 |
UCS | Cell metabolism gene | RPL19 | TOMM22 | 0.830402177 | 2.87E-32 |
UCS | Cell metabolism gene | RPL19 | POLR2H | 0.831421122 | 2.07E-32 |
UCS | Cell metabolism gene | RPL19 | PFDN6 | 0.831797005 | 1.83E-32 |
UCS | Cell metabolism gene | RPL19 | SNRPD3 | 0.832190054 | 1.61E-32 |
UCS | Cell metabolism gene | RPL19 | GEMIN6 | 0.834801936 | 6.82E-33 |
UCS | Cell metabolism gene | RPL19 | ITPA | 0.835265741 | 5.85E-33 |
UCS | Cell metabolism gene | RPL19 | SMPD2 | 0.835967041 | 4.63E-33 |
UCS | Cell metabolism gene | RPL19 | SNRPD1 | 0.836691898 | 3.63E-33 |
UCS | Cell metabolism gene | RPL19 | PGLS | 0.837073905 | 3.19E-33 |
UCS | Cell metabolism gene | RPL19 | ACOT8 | 0.837970518 | 2.36E-33 |
UCS | Cell metabolism gene | RPL19 | TOMM40 | 0.839642674 | 1.33E-33 |
UCS | Cell metabolism gene | RPL19 | PHKG2 | 0.839729133 | 1.30E-33 |
UCS | Cell metabolism gene | RPL19 | TIMM50 | 0.840053621 | 1.16E-33 |
UCS | Cell metabolism gene | RPL19 | SSR2 | 0.840434882 | 1.02E-33 |
UCS | Cell metabolism gene | RPL19 | SNRPF | 0.846078052 | 1.40E-34 |
UCS | Cell metabolism gene | RPL19 | TIMM13 | 0.846404115 | 1.24E-34 |
UCS | Cell metabolism gene | RPL19 | LSM4 | 0.846427253 | 1.23E-34 |
UCS | Cell metabolism gene | RPL19 | EXOSC5 | 0.849160468 | 4.58E-35 |
UCS | Cell metabolism gene | RPL19 | DGUOK | 0.850968969 | 2.35E-35 |
UCS | Cell metabolism gene | RPL19 | SLC27A5 | 0.853538394 | 8.96E-36 |
UCS | Cell metabolism gene | RPL19 | LSM2 | 0.854446402 | 6.35E-36 |
UCS | Cell metabolism gene | RPL19 | EXOSC1 | 0.859191838 | 1.01E-36 |
UCS | Cell metabolism gene | RPL19 | PSMB7 | 0.860373308 | 6.30E-37 |
UCS | Cell metabolism gene | RPL19 | APRT | 0.867428936 | 3.50E-38 |
UCS | Cell metabolism gene | RPL19 | PFDN5 | 0.868995061 | 1.80E-38 |
UCS | Cell metabolism gene | RPL19 | PSMC3 | 0.870800321 | 8.27E-39 |
UCS | Cell metabolism gene | RPL19 | PSMD13 | 0.876949021 | 5.37E-40 |
UCS | Cell metabolism gene | RPL19 | PSMB3 | 0.883963322 | 1.97E-41 |
UCS | Cell metabolism gene | RPL19 | SNRPD2 | 0.903790102 | 4.73E-46 |
UCS | Cell metabolism gene | RPL19 | TIMM8B | 0.905536658 | 1.66E-46 |
UCS | Cell metabolism gene | RPL19 | FAU | 0.92209126 | 2.62E-51 |
UCS | CGC | RPL19 | TFPT | 0.811786144 | 8.24E-30 |
UCS | CGC | RPL19 | SDHAF2 | 0.855988158 | 3.52E-36 |
UCS | Epifactor | RPL19 | PRMT1 | 0.802715468 | 1.04E-28 |
UCS | Epifactor | RPL19 | C17orf49 | 0.804374642 | 6.59E-29 |
UCS | Epifactor | RPL19 | SIRT7 | 0.806560177 | 3.60E-29 |
UCS | Epifactor | RPL19 | CXXC1 | 0.806934352 | 3.25E-29 |
UCS | Epifactor | RPL19 | TFPT | 0.811786144 | 8.24E-30 |
UCS | Epifactor | RPL19 | EXOSC4 | 0.818595626 | 1.12E-30 |
UCS | Epifactor | RPL19 | PRPF31 | 0.822601092 | 3.34E-31 |
UCS | Epifactor | RPL19 | CCDC101 | 0.824730888 | 1.73E-31 |
UCS | Epifactor | RPL19 | ZNHIT1 | 0.82861992 | 5.09E-32 |
UCS | Epifactor | RPL19 | PPM1G | 0.830367552 | 2.91E-32 |
UCS | Epifactor | RPL19 | NOC2L | 0.833023823 | 1.23E-32 |
UCS | Epifactor | RPL19 | EXOSC5 | 0.849160468 | 4.58E-35 |
UCS | Epifactor | RPL19 | INO80E | 0.854073583 | 7.32E-36 |
UCS | Epifactor | RPL19 | PPP4C | 0.857692798 | 1.82E-36 |
UCS | Epifactor | RPL19 | EXOSC1 | 0.859191838 | 1.01E-36 |
UCS | Epifactor | RPL19 | SS18L2 | 0.859907875 | 7.59E-37 |
UCS | Epifactor | RPL19 | RUVBL2 | 0.867220337 | 3.82E-38 |
UCS | Epifactor | RPL19 | SIRT6 | 0.86758637 | 3.27E-38 |
UCS | Epifactor | RPL19 | FBL | 0.872519553 | 3.91E-39 |
UCS | Epifactor | RPL19 | BRMS1 | 0.878919569 | 2.16E-40 |
UCS | Epifactor | RPL19 | TAF10 | 0.908935373 | 2.04E-47 |
UCS | IUPHAR | RPL19 | PRMT1 | 0.802715468 | 1.04E-28 |
UCS | IUPHAR | RPL19 | SIRT7 | 0.806560177 | 3.60E-29 |
UCS | IUPHAR | RPL19 | PSMB1 | 0.808395115 | 2.16E-29 |
UCS | IUPHAR | RPL19 | PPIA | 0.832454128 | 1.48E-32 |
UCS | IUPHAR | RPL19 | SMPD2 | 0.835967041 | 4.63E-33 |
UCS | IUPHAR | RPL19 | PHKG2 | 0.839729133 | 1.30E-33 |
UCS | IUPHAR | RPL19 | SLC27A5 | 0.853538394 | 8.96E-36 |
UCS | IUPHAR | RPL19 | SIRT6 | 0.86758637 | 3.27E-38 |
UCS | Kinase | RPL19 | PHKG2 | 0.839729133 | 1.30E-33 |
UCS | TF | RPL19 | THAP3 | 0.80292371 | 9.81E-29 |
UCS | TF | RPL19 | IRF3 | 0.803456911 | 8.48E-29 |
UCS | TF | RPL19 | CXXC1 | 0.806934352 | 3.25E-29 |
UCS | TF | RPL19 | GTF3A | 0.807324134 | 2.91E-29 |
UCS | TF | RPL19 | ZNF668 | 0.816742718 | 1.94E-30 |
UCS | TF | RPL19 | ZNF511 | 0.819177061 | 9.42E-31 |
UCS | TF | RPL19 | DRAP1 | 0.820018782 | 7.31E-31 |
UCS | TF | RPL19 | ZNF444 | 0.827775406 | 6.65E-32 |
UCS | TF | RPL19 | THYN1 | 0.831222598 | 2.21E-32 |
UCS | TF | RPL19 | ZNF688 | 0.843016169 | 4.14E-34 |
UCS | TF | RPL19 | ZNF787 | 0.845566093 | 1.68E-34 |
UCS | TF | RPL19 | ZNF428 | 0.848728383 | 5.36E-35 |
UCS | TSG | RPL19 | IRF3 | 0.803456911 | 8.48E-29 |
UCS | TSG | RPL19 | PFN1 | 0.80660718 | 3.56E-29 |
UCS | TSG | RPL19 | ZNF668 | 0.816742718 | 1.94E-30 |
UCS | TSG | RPL19 | TSSC4 | 0.838028033 | 2.31E-33 |
UCS | TSG | RPL19 | GADD45GIP1 | 0.842411765 | 5.12E-34 |
UCS | TSG | RPL19 | HTRA2 | 0.843438125 | 3.57E-34 |
UCS | TSG | RPL19 | AIP | 0.846356964 | 1.27E-34 |
UCS | TSG | RPL19 | PARK7 | 0.857342423 | 2.08E-36 |
UCS | TSG | RPL19 | NPRL2 | 0.860228602 | 6.68E-37 |
UCS | TSG | RPL19 | SIRT6 | 0.86758637 | 3.27E-38 |
UCS | TSG | RPL19 | GNB2L1 | 0.873247649 | 2.83E-39 |
UCS | TSG | RPL19 | BRMS1 | 0.878919569 | 2.16E-40 |
UCS | TSG | RPL19 | GLTSCR2 | 0.882080277 | 4.88E-41 |
UVM | Cell metabolism gene | RPL19 | NME2 | 0.81147569 | 7.00E-20 |
UVM | Cell metabolism gene | RPL19 | FAU | 0.822181955 | 8.89E-21 |
UVM | TF | RPL19 | NME2 | 0.81147569 | 7.00E-20 |
UVM | TSG | RPL19 | GLTSCR2 | 0.805869039 | 1.96E-19 |
UVM | TSG | RPL19 | GNB2L1 | 0.810331464 | 8.66E-20 |
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Protein 3D structure Visit iCn3D. |
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Protein-protein interaction networks * Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P)) |
Overlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P)) |
* Edge colors based on TCGA cancer types. |
* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P)) |
Cancer type | Translation factor | Interacting protein coding gene | FC | adj.pval |
KIRP | RPL19 | RPL18A | -1.51651392808885 | 0.00016188295558095 |
KICH | RPL19 | RPS27A | 1.75396693785956 | 0.000187873840332031 |
KIRP | RPL19 | RPS16 | -1.35957043617517 | 0.00019507110118866 |
STAD | RPL19 | RPS23 | 1.85076760664576 | 0.000364991836249828 |
COAD | RPL19 | RPS3 | 1.48730375143014 | 0.000411599874496461 |
KIRP | RPL19 | RPS11 | -1.01861570565103 | 0.00105937570333481 |
LIHC | RPL19 | RPL8 | -4.84588284974558 | 0.00110314154326131 |
PRAD | RPL19 | RPL18A | 1.40600175748499 | 0.00205137828390396 |
KICH | RPL19 | RPS12 | 1.26997381758431 | 0.00308787822723389 |
THCA | RPL19 | RPS16 | -6.16322798156577 | 0.0115764821363307 |
LUSC | RPL19 | RPS23 | 1.46751169891047 | 0.0174932185880974 |
BLCA | RPL19 | RPS12 | -1.47804673440421 | 0.0204124450683594 |
BLCA | RPL19 | RPS27A | -1.04747470069188 | 0.0258216857910156 |
HNSC | RPL19 | RPS3 | -4.73505819095135 | 0.0273726439852453 |
COAD | RPL19 | RPS11 | 1.35307548998204 | 0.0312207043170929 |
UCEC | RPL19 | RPS23 | -2.03658159814007 | 0.046875 |
BRCA | RPL19 | RPS12 | -4.91239327478244 | 1.85340619742495e-09 |
KIRP | RPL19 | RPL37 | -1.17421621947139 | 2.26888805627823e-05 |
KIRC | RPL19 | RPL35 | -1.06475238059392 | 2.72286325678163e-08 |
KIRC | RPL19 | RPL8 | -1.18252459971773 | 5.64962994208288e-07 |
KIRP | RPL19 | RPL8 | -1.53003692350119 | 6.0301274061203e-05 |
KIRC | RPL19 | RPS16 | -1.66149869889384 | 7.8509870430991e-09 |
BRCA | RPL19 | RPS27A | -4.28512148200424 | 7.8788217967112e-14 |
KIRC | RPL19 | RPL37 | -2.87198822058464 | 8.03913394748564e-12 |
KIRP | RPL19 | RPL35 | -1.52981101975496 | 9.0546440333128e-05 |
KIRC | RPL19 | RPS3 | -1.29560847926387 | 9.05905681935088e-10 |
KIRC | RPL19 | RPL18A | -4.43079304960843 | 9.2516163152192e-11 |
Protein-protein interactors with this translation factor (BIOGRID-3.4.160) |
PPI interactors with RPL19 |
HDGF, ARRB2, SIRT7, TERF1, CUL3, CUL4A, CUL5, CUL2, CDK2, CUL1, COPS5, CAND1, NEDD8, RPL10A, RPL11, RPL12, RPL13, RPL14, RPL15, RPL18A, RPL18, RPL21, RPL22, RPL23, RPL24, RPL27A, RPL30, RPL31, RPL37A, RPL3, RPL4, RPL5, RPL6, RPL7A, RPL7, RPL9, RPS13, RPS14, RPS15A, RPS16, RPS17, RPS19, RPS23, RPS25, RPS26, RPS2, RPS3A, RPS3, RPS4X, RPS5, RPS6, RPS7, RPS8, RPSA, RPL8, RPL23A, RPS24, RPS11, RPS28, RPL10, RPS20, RPS12, RPLP0, RPL36, RPL27, RPS9, RPL17, RPL32, RPS27A, RPS21, NOP56, NCL, ILF3, RSL1D1, HNRNPU, GNL3, ILF2, SRP14, SLC25A5, EIF4A1, FBL, NOP58, TUFM, DDX21, NHP2L1, LUC7L2, NOLC1, HNRNPM, NIFK, NOP2, RPLP0P6, RPL10L, RPS27L, RRS1, SND1, PTGES3, GNB2L1, ECE1, NUP214, TUBB7P, DDX5, MRPL12, ESR1, MAGOH, EIF4A3, UBL4A, PAN2, IGSF8, ICAM1, COX11, YWHAQ, TARDBP, PARP1, KARS, NMT1, QARS, RPLP1, RPA3, RPA2, RPA1, STAU1, CEP250, TP53, CUL7, OBSL1, RNF2, RPS6KB2, RPL13A, RPL38, RPS29, RPL26, RPL28, RPL34, RPL35, RPL35A, RPL3L, RPLP2, RPS10, RPS15, RPS18, LOC101929876, SEC61A1, NTRK1, HIST1H3E, NPM1, Eif3a, Eif3e, Rpl35, Srp72, Rrbp1, Ksr1, E4F1, ZCRB1, SART3, H2AFX, CYLD, INO80B, TRIM25, YAP1, MTF1, TRIM14, GSK3A, ARNT, BMP4, MAP2K3, PCBP1, PYHIN1, PRPF8, EFTUD2, AAR2, PIH1D1, TNIP2, CHD3, RNF4, CHD4, RIOK1, FGF11, HEXIM1, MEPCE, LARP7, SNAI1, RECQL4, REST, MYC, HIST1H3A, METTL14, KIAA1429, RC3H1, RC3H2, ACTC1, PHB, RBX1, KIN, NR2C2, PPP1CC, CTCF, NINL, VRK1, HIST1H4A, SNRNP70, Dppa3, PTPN21, ITFG1, HMGB1, BIRC3, WWP2, CMTR1, ARIH2, PLEKHA4, KCTD10, PINK1, FANCD2, HCVgp1, ZC3H18, GRB7, MAP3K14, PTPN6, HIST2H2BE, FMNL3, IGF2R, FKBP2, TMEM132C, TEX15, NISCH, ORF8, DUX4, CIT, ANLN, AURKB, CHMP4B, CHMP4C, ECT2, KIF14, KIF20A, KIF23, PRC1, MKI67, LRRC59, NDN, Rnf183, BRD4, N, Apc2, RBM39, FBP1, RIN3, PARK2, UFL1, DDRGK1, TRIM37, ATG3, USP15, FZR1, WDR5, PAGE4, NUDCD2, NAA40, WHSC1, ADARB1, PURA, RRP8, MRPL45, RSBN1, AATF, MALSU1, MRPL49, RPL26L1, HIST2H2AC, YTHDF1, SF3B1, NGDN, ZNF22, PRR3, MRPL11, MRPL9, MRPL1, MRPL38, MRPL40, ZNF646, ZNF384, MRPL28, NPM3, DHX8, MRPL47, MRPL16, GADD45GIP1, ZFR, MRPL50, PABPC4L, MRPL55, DDX55, BMS1, ZFP62, CHERP, ISG20L2, MRPL30, MRPS30, PRDM15, RRP12, STRBP, GZF1, BHLHA15, ZNF768, KNOP1, NOC2L, MRPS15, MRPS9, MRPS25, MRPL21, ZNF346, GTPBP4, YTHDC1, GLE1, ZNF777, TOE1, H1FOO, ZNF771, KRR1, ZNF770, PRKRIR, ZNF70, KRI1, RPL36AL, NOC4L, PRKRA, ZBTB24, STAU2, DDX18, RBM34, BUD13, REXO4, HERC5, ZFP91, RBM19, MRPL23, SF3B2, MRPL13, DAXX, MINA, TRIM71, MRPL44, MRPL43, FARS2, NOL10, MRPL10, CCDC140, ZKSCAN8, MRPL51, SRSF1, DDX10, BLM, YBX1, MRPL39, MRPL32, MRPL24, CEBPZ, NOA1, MRPL22, MRPL2, NAT10, MPHOSPH10, SREK1, RBM5, ZNF668, ZNF624, GNL2, RSBN1L, DHX57, WDR55, ZC3HAV1, MRPL34, ICT1, MRPS10, YBX2, MRPS7, ZNF629, NOC3L, SRSF6, SRSF5, ZSCAN25, UTP23, ZBTB11, ZNF16, ELAVL4, MRPL18, DDX31, MRPL15, MRPS26, ZNF574, RBM28, ABT1, PTCD3, METTL17, MRPL42, PRPF4B, MRPL3, MAP7D1, C7orf50, WDR74, GLYR1, DDX27, YTHDC2, MRPL20, GLTSCR2, EPB41L5, FAM111A, ZNF512, MRPL27, MRPL52, MRPL57, MRPS17, MRPS18C, PAK1IP1, MRPL4, MRPS35, SRSF10, RSL24D1, OASL, CCDC137, DDX50, DKC1, MRPL48, DDX24, MRPS5, VPRBP, LARP1B, MAGEB2, SURF6, NKRF, EIF2AK2, SCAF1, GAR1, HIST2H2AB, PPAN-P2RY11, DAP3, MTERF3, APOBEC3F, LTV1, MRPL41, DDX54, NOL12, DHX36, MAK16, RPL7L1, MRPL37, POP1, YBX3, MRPS14, MRPS11, NOP16, FTSJ3, MRPL35, MRPL17, NSA2, MRPL46, RPS4Y2, BTF3, FBXW7, EIF4ENIF1, Rbm14, NLRP7, RCHY1, CCNF, OPTN, KLF4, |
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Clinically associated variants from ClinVar. |
Gene | Chr | Position | RefSeq | VarSeq | RefSeeq | VarType | Pathogenic | Disease | VarInfo |
RPL19 | chr17 | 37356599 | T | G | single_nucleotide_variant | Uncertain_significance | not_provided | SO:0001582|initiatior_codon_variant,SO:0001583|missense_variant,SO:0001623|5_prime_UTR_variant | SO:0001582|initiatior_codon_variant,SO:0001583|missense_variant,SO:0001623|5_prime_UTR_variant |
RPL19 | chr17 | 37357506 | CG | AT | Indel | Uncertain_significance | not_provided | SO:0001583|missense_variant | SO:0001583|missense_variant |
RPL19 | chr17 | 37357556 | C | T | single_nucleotide_variant | Likely_benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
RPL19 | chr17 | 37358647 | C | A | single_nucleotide_variant | Benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
RPL19 | chr17 | 37358679 | G | A | single_nucleotide_variant | Benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
RPL19 | chr17 | 37359324 | C | G | single_nucleotide_variant | Likely_benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
RPL19 | chr17 | 37359356 | G | A | single_nucleotide_variant | Uncertain_significance | not_provided | SO:0001583|missense_variant | SO:0001583|missense_variant |
RPL19 | chr17 | 37360342 | G | A | single_nucleotide_variant | Likely_benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
RPL19 | chr17 | 37360769 | C | T | single_nucleotide_variant | Likely_benign | not_provided | SO:0001627|intron_variant | SO:0001627|intron_variant |
RPL19 | chr17 | 37360793 | C | T | single_nucleotide_variant | Likely_benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
RPL19 | chr17 | 37360844 | G | A | single_nucleotide_variant | Benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
RPL19 | chr17 | 37360846 | C | T | single_nucleotide_variant | Benign | not_provided | SO:0001583|missense_variant | SO:0001583|missense_variant |
RPL19 | chr17 | 37360863 | A | T | single_nucleotide_variant | Benign | not_provided | SO:0001583|missense_variant | SO:0001583|missense_variant |
RPL19 | chr17 | 37360874 | A | G | single_nucleotide_variant | Likely_benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
RPL19 | chr17 | 37360889 | G | A | single_nucleotide_variant | Likely_benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
RPL19 | chr17 | 37360895 | G | A | single_nucleotide_variant | Benign | not_provided | SO:0001819|synonymous_variant | SO:0001819|synonymous_variant |
nsSNVs with sample frequency (size of circle) from TCGA 33 cancers. |
SNVs and Indels |
Gene | Cancer type | Chromosome | Start | End | RefSeeq | MutSeq | Mutation type | AAchange | # samples |
RPL19 | PCPG | chr17 | 37360890 | 37360890 | A | G | Missense_Mutation | p.T194A | 4 |
RPL19 | BRCA | chr17 | 37358625 | 37358625 | G | A | Silent | p.T56 | 3 |
RPL19 | BRCA | chr17 | 37359326 | 37359326 | G | A | Missense_Mutation | p.R107K | 3 |
RPL19 | KIRC | chr17 | 37360863 | 37360863 | A | T | Missense_Mutation | p.I185F | 3 |
RPL19 | KIRP | chr17 | 37358657 | 37358657 | C | T | Missense_Mutation | 2 | |
RPL19 | UCEC | chr17 | 37358641 | 37358641 | C | T | Nonsense_Mutation | p.R62* | 2 |
RPL19 | UCEC | chr17 | 37359247 | 37359247 | C | T | Missense_Mutation | p.R81W | 2 |
RPL19 | UCEC | chr17 | 37359332 | 37359332 | A | G | Missense_Mutation | p.Y109C | 2 |
RPL19 | UCEC | chr17 | 37359355 | 37359355 | C | T | Missense_Mutation | p.R117C | 2 |
RPL19 | TGCT | chr17 | 37360424 | 37360424 | C | T | Missense_Mutation | p.R151C | 2 |
RPL19 | KIRP | chr17 | 37358657 | 37358657 | C | T | Missense_Mutation | p.T67I | 2 |
RPL19 | THYM | chr17 | 37359313 | 37359313 | C | T | Missense_Mutation | p.R103C | 2 |
RPL19 | SKCM | chr17 | 37358611 | 37358611 | C | T | Missense_Mutation | p.R52C | 1 |
RPL19 | BLCA | chr17 | 37360850 | 37360850 | G | C | Missense_Mutation | 1 | |
RPL19 | THYM | chr17 | 37360425 | 37360425 | G | A | Missense_Mutation | p.R151H | 1 |
RPL19 | LIHC | chr17 | 37357506 | 37357506 | C | T | Missense_Mutation | p.R16C | 1 |
RPL19 | SKCM | chr17 | 37360881 | 37360881 | G | A | Missense_Mutation | p.E189K | 1 |
RPL19 | BLCA | chr17 | 37360850 | 37360850 | G | C | Missense_Mutation | p.K178N | 1 |
RPL19 | LUAD | chr17 | 37358692 | 37358692 | G | T | Splice_Site | p.G77_splice | 1 |
RPL19 | SKCM | chr17 | 37357520 | 37357520 | G | A | Silent | p.K18K | 1 |
RPL19 | LUAD | chr17 | 37357505 | 37357505 | C | T | Silent | p.L13L | 1 |
RPL19 | SKCM | chr17 | 37358611 | 37358611 | C | T | Missense_Mutation | p.R50C | 1 |
RPL19 | LUAD | chr17 | 37360818 | 37360818 | C | G | Missense_Mutation | p.R168G | 1 |
RPL19 | STAD | chr17 | 37359334 | 37359334 | C | T | Missense_Mutation | p.R110C | 1 |
RPL19 | COAD | chr17 | 37360385 | 37360385 | C | T | Missense_Mutation | p.L138F | 1 |
RPL19 | LUAD | chr17 | 37358692 | 37358692 | G | T | Missense_Mutation | p.G79C | 1 |
RPL19 | STAD | chr17 | 37359273 | 37359273 | G | T | Missense_Mutation | p.M89I | 1 |
RPL19 | LUSC | chr17 | 37357551 | 37357551 | G | A | Missense_Mutation | p.E31K | 1 |
RPL19 | KIRC | chr17 | 37357533 | 37357533 | G | C | Missense_Mutation | p.D25H | 1 |
RPL19 | PAAD | chr17 | 37357437 | 37357437 | G | A | Missense_Mutation | 1 | |
RPL19 | THCA | chr17 | 37360844 | 37360844 | G | A | Silent | 1 | |
RPL19 | KIRC | chr17 | 37360793 | 37360793 | C | T | Silent | p.A161A | 1 |
RPL19 | THCA | chr17 | 37360846 | 37360846 | C | T | Missense_Mutation | 1 | |
RPL19 | KIRC | chr17 | 37360846 | 37360846 | C | T | Missense_Mutation | p.A179V | 1 |
RPL19 | PRAD | chr17 | 37360425 | 37360425 | G | A | Missense_Mutation | p.R149H | 1 |
RPL19 | BLCA | chr17 | 37357435 | 37357435 | C | T | Missense_Mutation | 1 | |
RPL19 | THYM | chr17 | 37359313 | 37359313 | C | T | Missense_Mutation | 1 | |
RPL19 | PRAD | chr17 | 37357515 | 37357517 | AAG | - | In_Frame_Del | p.K19del | 1 |
RPL19 | BLCA | chr17 | 37357472 | 37357472 | C | T | Silent | 1 |
Copy number variation (CNV) of RPL19 * Click on the image to open the original image in a new window. |
Fusion gene breakpoints (product of the structural variants (SVs)) across RPL19 * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion genes with this translation factor from FusionGDB2.0. |
FusionGDB2 ID | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
57232 | BRCA | TCGA-A8-A08B-01A | CACNB1 | chr17 | 37341037 | - | RPL19 | chr17 | 37358570 | + |
57232 | LAML | TCGA-AB-2932_704G6AAXX_6 | CDK12 | chr17 | 37628016 | + | RPL19 | chr17 | 37359242 | + |
57232 | N/A | BI496727 | DLG2 | chr11 | 83548765 | - | RPL19 | chr17 | 37360980 | - |
57232 | N/A | AA075993 | FAM153C | chr5 | 177482847 | - | RPL19 | chr17 | 37360980 | - |
57232 | N/A | AA491515 | FAM153C | chr5 | 177483265 | + | RPL19 | chr17 | 37360330 | + |
57232 | N/A | AA164713 | ISPD | chr7 | 16328015 | - | RPL19 | chr17 | 37360975 | - |
57233 | N/A | EC555197 | NAPEPLD | chr7 | 102782084 | - | RPL19 | chr17 | 37359240 | + |
76103 | N/A | AA579455 | RPL19 | chr17 | 37360821 | + | AC009997.1 | chr15 | 56038831 | + |
99398 | N/A | BI861713 | RPL19 | chr17 | 37360975 | + | ADAM9 | chr8 | 38871032 | - |
76103 | N/A | DT217361 | RPL19 | chr17 | 37360365 | + | ALAD | chr9 | 116155751 | - |
76103 | N/A | AW021565 | RPL19 | chr17 | 37360980 | + | ALOX12P2 | chr17 | 6840435 | + |
99260 | Non-Cancer | TCGA-IP-7968-11A | RPL19 | chr17 | 37357572 | + | CACNB1 | chr17 | 37351223 | - |
76103 | BRCA | TCGA-BH-A0B7 | RPL19 | chr17 | 37356602 | + | CCL11 | chr17 | 32614114 | + |
76103 | BRCA | TCGA-BH-A0B7-01A | RPL19 | chr17 | 37356602 | + | CCL11 | chr17 | 32614115 | + |
76103 | BRCA | TCGA-BH-A0B7-01A | RPL19 | chr17 | 37356731 | + | CCL11 | chr17 | 32614115 | + |
94731 | N/A | BF526730 | RPL19 | chr17 | 37360975 | + | CEP152 | chr15 | 49020117 | + |
76103 | N/A | AV682672 | RPL19 | chr17 | 37360980 | + | ERVMER34-1 | chr4 | 53592064 | - |
76103 | N/A | AA316329 | RPL19 | chr17 | 37359365 | + | FAM153C | chr5 | 177482622 | + |
76103 | N/A | AA541786 | RPL19 | chr17 | 37358569 | - | FAM153C | chr5 | 177483111 | - |
76103 | N/A | BI855679 | RPL19 | chr17 | 37360980 | + | FAM153C | chr5 | 177482611 | + |
76103 | N/A | BI858244 | RPL19 | chr17 | 37360980 | + | FAM153C | chr5 | 177482622 | + |
76103 | N/A | BI858270 | RPL19 | chr17 | 37360870 | - | FAM153C | chr5 | 177483187 | + |
76103 | N/A | HH980979 | RPL19 | chr17 | 37360980 | + | FAM153C | chr5 | 177482573 | + |
100117 | N/A | BI496198 | RPL19 | chr17 | 37360975 | + | ISPD | chr7 | 16328015 | + |
96230 | MESO | TCGA-MQ-A6BR-01A | RPL19 | chr17 | 37357572 | + | ITLN1 | chr1 | 160846606 | - |
94447 | N/A | BE720744 | RPL19 | chr17 | 37360412 | - | KRT13 | chr17 | 39657355 | - |
87953 | N/A | BG575833 | RPL19 | chr17 | 37360980 | + | MAGI1 | chr3 | 65935556 | + |
100576 | N/A | AA508102 | RPL19 | chr17 | 37360980 | + | MAP2K5 | chr15 | 67843129 | - |
95663 | N/A | BI493272 | RPL19 | chr17 | 37360980 | + | PPP6R2 | chr22 | 50828443 | - |
102036 | N/A | BM013487 | RPL19 | chr17 | 37360975 | + | PRKCZ | chr1 | 2078034 | - |
102127 | N/A | AA483007 | RPL19 | chr17 | 37360980 | + | RAPGEF4 | chr2 | 173736372 | - |
83858 | BRCA | TCGA-OL-A5RZ-01A | RPL19 | chr17 | 37359365 | + | RPS24 | chr10 | 79800367 | + |
102305 | N/A | AW021900 | RPL19 | chr17 | 37360980 | + | STX8 | chr17 | 9353128 | - |
92453 | N/A | T20077 | RPL19 | chr17 | 37360975 | + | ZNF407 | chr18 | 72724905 | + |
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Kaplan-Meier plots with logrank tests of overall survival (OS) |
Cancer type | Translation factor | Coefficent | Hazard ratio | Wald test pval | Likelihool ratio pval | Logrank test pval | # samples |
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Differential gene expression between female and male. (Wilcoxon test, pval<0.05) |
Cancer type | Translation factor | pval | adj.p |
KIRC | RPL19 | 0.0269158656989509 | 0.75 |
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Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05) |
Cancer type | Translation factor | pval | adj.p |
LUSC | RPL19 | 0.000456375023925282 | 0.015 |
PAAD | RPL19 | 0.00813363357155575 | 0.26 |
CHOL | RPL19 | 0.0432762826814578 | 1 |
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Drugs targeting genes involved in this translation factor. (DrugBank Version 5.1.8 2021-05-08) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Diseases associated with this translation factor. (DisGeNet 4.0) |
Disease ID | Disease Name | # PubMeds | Disease source |
C1260899 | Anemia, Diamond-Blackfan | 1 | GENOMICS_ENGLAND |